ViewGene
Locus Name:
GeneID:
Location:

GeneID:6877
TrivialName: PA14_68410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68410
PAO1 Ortholog Locus:
Sequence Length:993
Protein Length:330
Start: 6104094
Stop: 6103102
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD17591.1| (AL646078) PUTATIVE MULTIDRUG RESISTANCE HOMOLOG TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
Identities = 47/167 (28%), Positives = 69/167 (41%), Gaps = 23/167 (13%)
Sequence:
GTGTGGAGCCAGCCTAGGCCTGTCGCGGAGCGGCGTCTAATCGGTTGTGCCGATACCCTGATCGACAGGGTC
TATCAAGCCGGCGGGCGCCAGCCAGGTCCGGGCCTCCTCGAAGCAGGCTTCGGCCAGCGCCGAGCGCGGCTG
TCCGCTGCGAATGATCAGGCCGAGCGCTGCCAGGGTATGGGCGTCCTCGATGGGGACCAGGCGCAACTCGTC
GTCGACTTCGCTGCCCAACGGCATGATCGCGCAGCACAAGCCACGCTGCACCGCCTGCAGCAGTTGCTGCAC
CGAGTCGGTTTCCAGGCGCGCGATGGGGCTCAGCCCGCGGCTGCGGAAGTTGTGGTCGATGGATTGGCGGAA
GTGCATGCCCGCCGAGAGCAGGCCCAGCGGCAGGCCAGCCAGCGCATCCCAGTTCAGCAGCGCGGCGTCGAG
CGGGAAATGGCTGGGATGATGGAGCAGGCCCATGCGGGTCTCCGCCAGTTCGATGCCCTCGAAATGGCTGCG
GTCCAGACGGTCCAGATAAGAGACGCCGAGATCGAACTGGTTGCGCGCCAGGCCTTCGAGTACCTGTTCCGA
ACTCAGGGAATAGAGCTGGAAACGCAACTCCGGGTGGCGCCCGGCCATGTGCTGGACCAGGCGCATCGGGTC
GAAGCTGGCCAGCGGCACCACGCCCAGGCGCAGGGTCCCGACCAGTTGGCCGCGGCAGGCGGCGGCTTCCGC
GTACAGCCCTTCCTGGGCCGCCAGCAGGCTGCGTGCCCAGGCCAGTACGCGCTCGCCGGCCTCGGTGAAGCC
TTCGAAGCGTTGGCTGCGTCGCACCAGTTCCAGGCCGAGTTCTTCTTCCAGGCTGCGCAGGCGCATGGACAG
GGTCGGCTGGGTGACGTGGCAGCGTGCGGCGGCCTGGCCGAAGTGGCGGGTTTCGTCGAGGGCGCAGAGGAA
TTTCAGTTGCTTGATGTCCATCGGCGCTTCCGTGGCGGGGGTGTCGCCGAATCTTAA
Translation:
MWSQPRPVAERRLIGCADTLIDRVYQAGGRQPGPGLLEAGFGQRRARLSAANDQAERCQGMGVLDGDQAQLV
VDFAAQRHDRAAQATLHRLQQLLHRVGFQARDGAQPAAAEVVVDGLAEVHARREQAQRQASQRIPVQQRGVE
REMAGMMEQAHAGLRQFDALEMAAVQTVQIRDAEIELVARQAFEYLFRTQGIELETQLRVAPGHVLDQAHRV
EAGQRHHAQAQGPDQLAAAGGGFRVQPFLGRQQAACPGQYALAGLGEAFEALAASHQFQAEFFFQAAQAHGQ
GRLGDVAACGGLAEVAGFVEGAEEFQLLDVHRRFRGGGVAES*
AnnotationID:6878GeneID:6877
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 16:04:32
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:16630




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30835




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49879How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5367780Stop: 5366788

          
Length: 993


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGTGGAGCCAGCCTAGGCCTGTCGCGGAGCGGCGTCTAATCGGTTGTGCCGATACCCTGATCGACAGGGTC 
TATCAAGCCGGCGGGCGCCAGCCAGGTCCGGGCCTCCTCGAAGCAGGCTTCGGCCAGCGCCGAGCGCGGCTG 
TCCGCTGCGAATGATCAGGCCGAGCGCTGCCAGGGTATGGGCGTCCTCGATGGGGACCAGGCGCAACTCGTC 
GTCGACTTCGCTGCCCAACGGCATGATCGCGCAGCACAAGCCACGCTGCACCGCCTGCAGCAGTTGCTGCAC 
CGAGTCGGTTTCCAGGCGCGCGATGGGGCTCAGCCCGCGGCTGCGGAAGTTGTGGTCGATGGATTGGCGGAA 
GTGCATGCCCGCCGAGAGCAGGCCCAGCGGCAGGCCAGCCAGCGCATCCCAGTTCAGCAGCGCGGCGTCGAG 
CGGGAAATGGCTGGGATGATGGAGCAGGCCCATGCGGGTCTCCGCCAGTTCGATGCCCTCGAAATGGCTGCG 
GTCCAGACGGTCCAGATAAGAGACGCCGAGATCGAACTGGTTGCGCGCCAGGCCTTCGAGTACCTGTTCCGA 
ACTCAGGGAATAGAGCTGGAAACGCAACTCCGGGTGGCGCCCGGCCATGTGCTGGACCAGGCGCATCGGGTC 
GAAGCTGGCCAGCGGCACCACGCCCAGGCGCAGGGTCCCGACCAGTTGGCCGCGGCAGGCGGCGGCTTCCGC 
GTACAGCCCTTCCTGGGCCGCCAGCAGGCTGCGTGCCCAGGCCAGTACGCGCTCGCCGGCCTCGGTGAAGCC 
TTCGAAGCGTTGGCTGCGTCGCACCAGTTCCAGGCCGAGTTCTTCTTCCAGGCTGCGCAGGCGCATGGACAG 
GGTCGGCTGGGTGACGTGGCAGCGTGCGGCGGCCTGGCCGAAGTGGCGGGTTTCGTCGAGGGCGCAGAGGAA 
TTTCAGTTGCTTGATGTCCATCGGCGCTTCCGTGGCGGGGGTGTCGCCGAATCTTAA