ViewGene

Locus Name:
GeneID:
Location:

GeneID:6875
TrivialName: PA14_68310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68310
PAO1 Ortholog Locus:
Sequence Length:1332
Protein Length:443
Start: 6093223
Stop: 6094554
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAA55649.1| (X79027) unknown [Microbacterium ammoniaphilum]
Identities = 99/326 (30%), Positives = 116/326 (35%), Gaps = 54/326 (16%)
Sequence:
ATGGGCGATCACCGCCGTCGGCATGCTCACCCTCGCTTTCGTCTTCCAGACCCTCGCCAACCGCAAGCCCGA
ACTCGACGGCGGCGTGTACGCCTACGCCAAGGCCGGCTTCGGCGACTACATGGGTTTCTCCTCGGCCTGGGG
CTACTGGATCAGCGCCTGGCTGGGCAACGTCGGCTACTTCGTCCTGTTGTTCAGCACCCTCGGCTACTTCTT
CCCGATCTTCGGCAAGGGCGACACCGTCGCCGCGATCGTCTGCGCCTCGGTCCTGCTCTGGGCCCTGCATTT
CCTGGTGCTGCGCGGGATCAAGGAGGCGGCGTTCATCAACACCGTCACCACCGTGGCCAAGATCGTGCCGCT
GTTCCTGTTCATCCTGATCTGCCTGTTCGCCTTCAAGCTGGACATCTTCACCGCCGACATCTGGGGCAAGAG
CAACCCGGACCTGGGCAGCGTGATGAACCAGGTGCGCAACATGATGCTGGTCACCGTCTGGGTGTTCATCGG
CATCGAGGGCGCGAGCATCTTCTCCTCCCGCGCGGAAAAACGTTCCGACGTCGGCAAGGCCACCGTGATCGG
CTTCATCACCGTCCTGCTCCTGCTGGTGCTGGTCAACGTGCTGTCCATGGGCGTGATGACCCAGCCGGAACT
GGCCAAGCTGCAGAACCCGTCGATGGCGCTGGTACTCGAGCATGTGGTCGGCCACTGGGGCGCCGTGCTGAT
CAGCGTCGGCCTGCTGATCTCGCTGCTGGGCGCGCTGCTCTCCTGGGTGCTGCTGTGCGCCGAGATCATGTT
CGCCGCGGCCAAGGACCACACCATGCCGGAGTTCCTGCGCCGCGAGAACGCCAACCAGGTGCCGGCCAACGC
CCTGTGGCTGACCAACATCTGCGTACAGGTGTTCCTGGTGGTGGTGTTCTTCACCTCGGGCGACCCGGACGG
CATGGACCCGTACACCAAGATGCTGCTCCTGGCCACCTCGATGATCCTGATTCCGTACTTCTGGTCCGCCGC
CTATGGCCTGCTGTTGACCCTGAAGGGCGAGACCTACGAGAACGATGCCCGCGAACGCAGCAAGGACCTGGT
CATCGCCGGCATCGCTGTGGTCTACGCGGTCTGGCTGCTCTACGCCGGTGGCCTGAAGTACCTGCTGCTGTC
CGCCCTGCTGTATGCGCCCGGCGCGATCCTCTTCGCCAAGGCCAAGCACGAGGTCGGCCAGCCGATCTTCAC
CGGAATCGAAAAACTGATCTTCGCCGCAGTCGTCATTGGCGCCCTGGTGGCTGCCTACGGCCTCTACGACGG
TTTCCTCACCCTCTGATTACTCCACTGGAGACGTGA
Translation:
MGDHRRRHAHPRFRLPDPRQPQARTRRRRVRLRQGRLRRLHGFLLGLGLLDQRLAGQRRLLRPVVQHPRLLL
PDLRQGRHRRRDRLRLGPALGPAFPGAARDQGGGVHQHRHHRGQDRAAVPVHPDLPVRLQAGHLHRRHLGQE
QPGPGQRDEPGAQHDAGHRLGVHRHRGREHLLLPRGKTFRRRQGHRDRLHHRPAPAGAGQRAVHGRDDPAGT
GQAAEPVDGAGTRACGRPLGRRADQRRPADLAAGRAALLGAAVRRDHVRRGQGPHHAGVPAPRERQPGAGQR
PVADQHLRTGVPGGGVLHLGRPGRHGPVHQDAAPGHLDDPDSVLLVRRLWPAVDPEGRDLRERCPRTQQGPG
HRRHRCGLRGLAALRRWPEVPAAVRPAVCARRDPLRQGQARGRPADLHRNRKTDLRRSRHWRPGGCLRPLRR
FPHPLITPLET*
AnnotationID:6876GeneID:6875
AnnotatorUID: danlee
Modification Date/Time: 2004-02-03 18:06:32
Gene Name:
Confidence Code:4
GeneProduct:hypothetical
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
No putative conserved domains identified.
Structural Features:
Genomic Context:
Comment:
ReferenceID:13456
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30831
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49877How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 5356909Stop: 5358240
Length: 1332
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGGCGATCACCGCCGTCGGCATGCTCACCCTCGCTTTCGTCTTCCAGACCCTCGCCAACCGCAAGCCCGA
ACTCGACGGCGGCGTGTACGCCTACGCCAAGGCCGGCTTCGGCGACTACATGGGTTTCTCCTCGGCCTGGGG
CTACTGGATCAGCGCCTGGCTGGGCAACGTCGGCTACTTCGTCCTGTTGTTCAGCACCCTCGGCTACTTCTT
CCCGATCTTCGGCAAGGGCGACACCGTCGCCGCGATCGTCTGCGCCTCGGTCCTGCTCTGGGCCCTGCATTT
CCTGGTGCTGCGCGGGATCAAGGAGGCGGCGTTCATCAACACCGTCACCACCGTGGCCAAGATCGTGCCGCT
GTTCCTGTTCATCCTGATCTGCCTGTTCGCCTTCAAGCTGGACATCTTCACCGCCGACATCTGGGGCAAGAG
CAACCCGGACCTGGGCAGCGTGATGAACCAGGTGCGCAACATGATGCTGGTCACCGTCTGGGTGTTCATCGG
CATCGAGGGCGCGAGCATCTTCTCCTCCCGCGCGGAAAAACGTTCCGACGTCGGCAAGGCCACCGTGATCGG
CTTCATCACCGTCCTGCTCCTGCTGGTGCTGGTCAACGTGCTGTCCATGGGCGTGATGACCCAGCCGGAACT
GGCCAAGCTGCAGAACCCGTCGATGGCGCTGGTACTCGAGCATGTGGTCGGCCACTGGGGCGCCGTGCTGAT
CAGCGTCGGCCTGCTGATCTCGCTGCTGGGCGCGCTGCTCTCCTGGGTGCTGCTGTGCGCCGAGATCATGTT
CGCCGCGGCCAAGGACCACACCATGCCGGAGTTCCTGCGCCGCGAGAACGCCAACCAGGTGCCGGCCAACGC
CCTGTGGCTGACCAACATCTGCGTACAGGTGTTCCTGGTGGTGGTGTTCTTCACCTCGGGCGACCCGGACGG
CATGGACCCGTACACCAAGATGCTGCTCCTGGCCACCTCGATGATCCTGATTCCGTACTTCTGGTCCGCCGC
CTATGGCCTGCTGTTGACCCTGAAGGGCGAGACCTACGAGAACGATGCCCGCGAACGCAGCAAGGACCTGGT
CATCGCCGGCATCGCTGTGGTCTACGCGGTCTGGCTGCTCTACGCCGGTGGCCTGAAGTACCTGCTGCTGTC
CGCCCTGCTGTATGCGCCCGGCGCGATCCTCTTCGCCAAGGCCAAGCACGAGGTCGGCCAGCCGATCTTCAC
CGGAATCGAAAAACTGATCTTCGCCGCAGTCGTCATTGGCGCCCTGGTGGCTGCCTACGGCCTCTACGACGG
TTTCCTCACCCTCTGATTACTCCACTGGAGACGTGA