ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6872

TrivialName: PA14_68220

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_68220

PAO1 Ortholog Locus:

Sequence Length: 1836

Protein Length: 611

Start: 6085771

Stop: 6087606

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 155/553 (28%), Positives = 195/553 (35%), Gaps = 90/553 (16%)

Sequence:

ATGCCCCCCTGCTTTCGGAGAAGGACCGCCAGGGCAAGGCATTCGCCGACGCCGACTGCTTCCCCTGAACGG
CAGGGAGCGACCGGCCTCGGCGCAAGGCGTGATAATTTAGGGCATCCCGTCCGGGATGCCCCGGATACTCGC
AGCCACGGCAGGTTCGTTCGTCTTGAAAGCCTATTTCCATCGCTGGCGCTCGCTGGTCATCCTCGCCCTGCT
TCTCGCGCCGCTGCTCTGGCCCCTGCAATATTTCGCCGAGCGCTACTACAGCGAGCAGTTGGCCGAGCAGAA
CCGCCAGACGCTCGACCTCTACGTCGCCAATCTGCTCGGTACGCTGCGCCGCTACGAAGAACTGCCGCAGAT
CCTCGGCGGCCTGCCGGTGCTGCGCCAGGCCCTGCAACAACCTGGCGACCCGTTGCTGCAGAAGATCGCCAA
CGAGGCGCTGGCCGACATCCGCCGACGCACCGGCGCCGACGTGATCTACCTGCTGCAACCGGACGGCACCAC
CCAGGTCGCCTCCAACTGGGCCCAGGCGGACAGTTTCGTCCACCGCAACTTCGCCTTCCGCCCCTATTATCG
CGAGGCCATGCAGGGCCGCCTGGCGCGCTTCTTCGGCCTGGGCACCACCTCGATCAAGCGCGGCTACTACTT
CGCCAGTGCGGTGAAGGAAGGCTCGCGGATCATCGGCGTGCTGGTGGTGAAGGTCGATCTCGAACACATCGA
ACGGCTCTGGGGCAATTCCCCGGAGCAACTGCTGGTGATAGACAACTACGGCGTGGTGATCCTCTCCTCGCG
CGAGGATTGGCGCTTCCATGCCAGTCGGCCGCTGAGCGCGGCGGAGCGCGACGAGATCCACGCCAACATCCC
CTACCCGGTGCAGGACCCGAAGCCCCTGCGCCTGCAGCAGAGCGCCTGGCTCAGCCAGAGCCGGACGCTACC
GGAAACCGGCTGGACGGTGAGCATCTACGCCCCCCGCACACTCATCGAACGGCCGGTGCGCAGCGTCCTGCT
GATCGGCGGCGCGACCCTGCTCGCCCTGCTCCTGCTGCTTACCCTGCTGACCCTCAGCCGCCGTCACTACCT
GGACCGCATCGCTCTCGAGGCCGAGGCCAAGCGCCAGTTGGAAGAGCGCGTACTGGAACGCACCCGCGAGCT
GGAGAACGCCAACGCGCAGTTGCAGCAGGAAGTCCACGAACGCGAGCAGGCCCAGCGCGAGCTGATGCGCGC
CCAGGACGAAGTGGTCCAGGCCGGCAAGCTCACGGCCCTCGGCACCATGTCGGCGAGCATCAGCCACGAACT
CAACCAGCCGCTGGCGGCGATCCGCAGCTACGCCGACAACGCCCGGGTGCTGCTCGACCACCAGCGCACCGA
AGACGCCCGCGGCAATCTCGAGCAGATCAGCGACCTCACCACCCGCATGGCCTCGATCATCGCCCACCTCAA
GGCCTATGCTCGCGGTGCGCGCCGGGCGCCGGAGAACGTGCAGCTGCAGCCGGCGATCGAGGACGCCCTGTC
GATGCTCGCCAGTCGGCGGCGGGCGATGAACGTCGAACTGCTGCGCGACGTGCCGGACGCCCCGCTGTGGGT
CCAGGCCGGCGAGACCCGCTTGCGGCAGATCCTCGGCAACCTGCTCACCAATGCCCTCGACGCGCTCGCCGA
GAAAGCTCCGCCACGGCGCCTGTGGGTGATCGCCAGCCAGGACCAGCACGGCGTGATCCTGACCCTGCGCGA
CAACGGCCCGGGGTTTTCCGAGGACGCCCTGGCCCACGCCCACGAACCCTTCTTCACCACCAAGACCACCGC
CAAAGGGCTCGGCCTCGGCCTGGCCATCTGCGATAA

Translation:

MPPCFRRRTARARHSPTPTASPERQGATGLGARRDNLGHPVRDAPDTRSHGRFVRLESLFPSLALAGHPRPA
SRAAALAPAIFRRALLQRAVGRAEPPDARPLRRQSARYAAPLRRTAADPRRPAGAAPGPATTWRPVAAEDRQ
RGAGRHPPTHRRRRDLPAATGRHHPGRLQLGPGGQFRPPQLRLPPLLSRGHAGPPGALLRPGHHLDQARLLL
RQCGEGRLADHRRAGGEGRSRTHRTALGQFPGATAGDRQLRRGDPLLARGLALPCQSAAERGGARRDPRQHP
LPGAGPEAPAPAAERLAQPEPDATGNRLDGEHLRPPHTHRTAGAQRPADRRRDPARPAPAAYPADPQPPSLP
GPHRSRGRGQAPVGRARTGTHPRAGERQRAVAAGSPRTRAGPARADARPGRSGPGRQAHGPRHHVGEHQPRT
QPAAGGDPQLRRQRPGAARPPAHRRRPRQSRADQRPHHPHGLDHRPPQGLCSRCAPGAGERAAAAGDRGRPV
DARQSAAGDERRTAARRAGRPAVGPGRRDPLAADPRQPAHQCPRRARRESSATAPVGDRQPGPARRDPDPAR
QRPGVFRGRPGPRPRTLLHHQDHRQRARPRPGHLR*

AnnotationID:6873 GeneID:6872

AnnotatorUID: diggins

Modification Date/Time: 2004-10-20 13:01:21

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:13451

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30825

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:34881

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6872_cdd.html

URL:

GC ORFID: `49874`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `5349457`	Stop: `5351292`
Length: `1836`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCCCCCCTGCTTTCGGAGAAGGACCGCCAGGGCAAGGCATTCGCCGACGCCGACTGCTTCCCCTGAACGG CAGGGAGCGACCGGCCTCGGCGCAAGGCGTGATAATTTAGGGCATCCCGTCCGGGATGCCCCGGATACTCGC AGCCACGGCAGGTTCGTTCGTCTTGAAAGCCTATTTCCATCGCTGGCGCTCGCTGGTCATCCTCGCCCTGCT TCTCGCGCCGCTGCTCTGGCCCCTGCAATATTTCGCCGAGCGCTACTACAGCGAGCAGTTGGCCGAGCAGAA CCGCCAGACGCTCGACCTCTACGTCGCCAATCTGCTCGGTACGCTGCGCCGCTACGAAGAACTGCCGCAGAT CCTCGGCGGCCTGCCGGTGCTGCGCCAGGCCCTGCAACAACCTGGCGACCCGTTGCTGCAGAAGATCGCCAA CGAGGCGCTGGCCGACATCCGCCGACGCACCGGCGCCGACGTGATCTACCTGCTGCAACCGGACGGCACCAC CCAGGTCGCCTCCAACTGGGCCCAGGCGGACAGTTTCGTCCACCGCAACTTCGCCTTCCGCCCCTATTATCG CGAGGCCATGCAGGGCCGCCTGGCGCGCTTCTTCGGCCTGGGCACCACCTCGATCAAGCGCGGCTACTACTT CGCCAGTGCGGTGAAGGAAGGCTCGCGGATCATCGGCGTGCTGGTGGTGAAGGTCGATCTCGAACACATCGA ACGGCTCTGGGGCAATTCCCCGGAGCAACTGCTGGTGATAGACAACTACGGCGTGGTGATCCTCTCCTCGCG CGAGGATTGGCGCTTCCATGCCAGTCGGCCGCTGAGCGCGGCGGAGCGCGACGAGATCCACGCCAACATCCC CTACCCGGTGCAGGACCCGAAGCCCCTGCGCCTGCAGCAGAGCGCCTGGCTCAGCCAGAGCCGGACGCTACC GGAAACCGGCTGGACGGTGAGCATCTACGCCCCCCGCACACTCATCGAACGGCCGGTGCGCAGCGTCCTGCT GATCGGCGGCGCGACCCTGCTCGCCCTGCTCCTGCTGCTTACCCTGCTGACCCTCAGCCGCCGTCACTACCT GGACCGCATCGCTCTCGAGGCCGAGGCCAAGCGCCAGTTGGAAGAGCGCGTACTGGAACGCACCCGCGAGCT GGAGAACGCCAACGCGCAGTTGCAGCAGGAAGTCCACGAACGCGAGCAGGCCCAGCGCGAGCTGATGCGCGC CCAGGACGAAGTGGTCCAGGCCGGCAAGCTCACGGCCCTCGGCACCATGTCGGCGAGCATCAGCCACGAACT CAACCAGCCGCTGGCGGCGATCCGCAGCTACGCCGACAACGCCCGGGTGCTGCTCGACCACCAGCGCACCGA AGACGCCCGCGGCAATCTCGAGCAGATCAGCGACCTCACCACCCGCATGGCCTCGATCATCGCCCACCTCAA GGCCTATGCTCGCGGTGCGCGCCGGGCGCCGGAGAACGTGCAGCTGCAGCCGGCGATCGAGGACGCCCTGTC GATGCTCGCCAGTCGGCGGCGGGCGATGAACGTCGAACTGCTGCGCGACGTGCCGGACGCCCCGCTGTGGGT CCAGGCCGGCGAGACCCGCTTGCGGCAGATCCTCGGCAACCTGCTCACCAATGCCCTCGACGCGCTCGCCGA GAAAGCTCCGCCACGGCGCCTGTGGGTGATCGCCAGCCAGGACCAGCACGGCGTGATCCTGACCCTGCGCGA CAACGGCCCGGGGTTTTCCGAGGACGCCCTGGCCCACGCCCACGAACCCTTCTTCACCACCAAGACCACCGC CAAAGGGCTCGGCCTCGGCCTGGCCATCTGCGATAA