ViewGene
Locus Name:
GeneID:
Location:

GeneID:6871
TrivialName: PA14_68180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68180
PAO1 Ortholog Locus:
Sequence Length:894
Protein Length:297
Start: 6084370
Stop: 6083477
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK46697.1| (AE007081) PE family protein [Mycobacterium tuberculosis CDC1551]
Identities = 56/167 (33%), Positives = 65/167 (38%), Gaps = 22/167 (13%)
Sequence:
ATGGTAGCGCCAGTCGGGCAGTACCAGGCCGAAGACCTGTTGCAGCTTGTGGTTGTCGAGGCGCGAATTGGC
CGGGCGCTTCGCCGGCACCGGGTAATCCTCGGTGGCAATCGGCAGGACCCGCTGCGGCGTCGCCTGCAATTC
CCAGCCCCGCTCCAGCGCCTGTTCGATGACGAAGCGCGCATAGAGGTGCCAGGACGTCTCGCCGCTGGCGAC
CAGGTGGTAGGTGCCGCTGGCCCGTGCTGCCAGCTCGGCATCCCAGCGCAGACGCTGCAGGGCCTGGGCGGT
GACGTCGGCGATCAGCTCGGCGCTGGTCGGCGCGCCGAACTGGTCGGCCACGACCTTGAGTTCGTCGCGTTG
CCCGGCCAGGCGCAGCATGGTCTTGGCGAAGTTCCCGCCGCGCGCGGCGTAGACCCAACTGGTGCGGAAGAT
CAGGTGGCGGCAGCCGCTGGCGCGGATGGCCTGCTCGCCTTCCAGCTTGGTCTGCCCGTAGACGCTCAGCGG
GCCGGTCGGCGCGTCCTCGGCGAAAGGCGCGCTGCCCGCGCCGTCGAACACGTAGTCGGTGGAGTAATGCAC
CAGCCAGGCGCCGCAGGCCGCGGCCTCCTCGGCCAGTACCGCGACGGCGCGGGCATTGATCAGGCGGGCGTT
GTCGGCATCGCTCTCGGCCTTGTCCACCGCGGTGTAGGCGCCGGCGTTGACGATGAACTGCGGCCGCTCGGC
GCGAACCAGTCGCGCCAGGCCTTCGGGGTCGGCGAGATCGGCGCGCCGGCGGTCGCAGACCAGCAGTTCGCC
CAGCGGCGCCAGGGCGCGCTGCAGCTCCCAGCCGACCTGGCCGTTGGCGCCGAGGAGAAGGATCCGGTTCAT
GCGTACTGCTTACCCACCCACTCGCGGTAG
Translation:
MVAPVGQYQAEDLLQLVVVEARIGRALRRHRVILGGNRQDPLRRRLQFPAPLQRLFDDEARIEVPGRLAAGD
QVVGAAGPCCQLGIPAQTLQGLGGDVGDQLGAGRRAELVGHDLEFVALPGQAQHGLGEVPAARGVDPTGAED
QVAAAAGADGLLAFQLGLPVDAQRAGRRVLGERRAARAVEHVVGGVMHQPGAAGRGLLGQYRDGAGIDQAGV
VGIALGLVHRGVGAGVDDELRPLGANQSRQAFGVGEIGAPAVADQQFAQRRQGALQLPADLAVGAEEKDPVH
AYCLPTHSR*
AnnotationID:6872GeneID:6871
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 14:02:30
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits at any threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:13449




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30823




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49873How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5348056Stop: 5347163

          
Length: 894


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGTAGCGCCAGTCGGGCAGTACCAGGCCGAAGACCTGTTGCAGCTTGTGGTTGTCGAGGCGCGAATTGGC 
CGGGCGCTTCGCCGGCACCGGGTAATCCTCGGTGGCAATCGGCAGGACCCGCTGCGGCGTCGCCTGCAATTC 
CCAGCCCCGCTCCAGCGCCTGTTCGATGACGAAGCGCGCATAGAGGTGCCAGGACGTCTCGCCGCTGGCGAC 
CAGGTGGTAGGTGCCGCTGGCCCGTGCTGCCAGCTCGGCATCCCAGCGCAGACGCTGCAGGGCCTGGGCGGT 
GACGTCGGCGATCAGCTCGGCGCTGGTCGGCGCGCCGAACTGGTCGGCCACGACCTTGAGTTCGTCGCGTTG 
CCCGGCCAGGCGCAGCATGGTCTTGGCGAAGTTCCCGCCGCGCGCGGCGTAGACCCAACTGGTGCGGAAGAT 
CAGGTGGCGGCAGCCGCTGGCGCGGATGGCCTGCTCGCCTTCCAGCTTGGTCTGCCCGTAGACGCTCAGCGG 
GCCGGTCGGCGCGTCCTCGGCGAAAGGCGCGCTGCCCGCGCCGTCGAACACGTAGTCGGTGGAGTAATGCAC 
CAGCCAGGCGCCGCAGGCCGCGGCCTCCTCGGCCAGTACCGCGACGGCGCGGGCATTGATCAGGCGGGCGTT 
GTCGGCATCGCTCTCGGCCTTGTCCACCGCGGTGTAGGCGCCGGCGTTGACGATGAACTGCGGCCGCTCGGC 
GCGAACCAGTCGCGCCAGGCCTTCGGGGTCGGCGAGATCGGCGCGCCGGCGGTCGCAGACCAGCAGTTCGCC 
CAGCGGCGCCAGGGCGCGCTGCAGCTCCCAGCCGACCTGGCCGTTGGCGCCGAGGAGAAGGATCCGGTTCAT 
GCGTACTGCTTACCCACCCACTCGCGGTAG