ViewGene
Locus Name:
GeneID:
Location:

GeneID:6870
TrivialName: PA14_68160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68160
PAO1 Ortholog Locus:
Sequence Length:1155
Protein Length:384
Start: 6083333
Stop: 6082179
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
ATGGCCCGGACGATCCTTGACGAAGGTGATCTGCTCGCGATAGCTGCGGCCGTCGGCGCGCGGCTGCTCCTG
GTCGAGGATGGCGCAGAGGGTCTCGACCACGTCGAGGTTGGCCTTTTCGTTCCAGCCGCCGACATTGTAGGT
CTCGCCCAGTTGCCCGGCTTCGAGGACCCGGCGGATGGCGCTGCAATGGTCCTTGACGTAGAGCCAGTCGCG
GATCTGCTGGCCGTCGCCGTAGATCGGCAGCGGCTTGCCGGCCAGGGCGTTGTGGATCACCAGTGGGATGAG
CTTTTCCGGGAAGTGGTACGGGCCGTAGTTGTTCGAGCAGTTGGTGGTCAGCACCGGCAGCCCGTAGGTGTG
GTGATAGGCCCGCACCAGGTGGTCGGAGGCCGCCTTGGACGCCGAGTAGGGACTGTTCGGCTCGTAGCGGTT
GTTCTCGGTGAAGGCCGGATCGCTCGGTGCCAGCGAGCCATAGACTTCGTCGGTGGAGACGTGGAGGAAGCG
GAATGCCGCCTTCGCTTCCGGCTCCAGCGCGCCCCAGTAGGCGCGCACTTCTTCCAGCAGGCGGAAGGTGCC
GACGATGTTGGTCTGGATGAAGTCCTCGGGGCCGTGGATCGAGCGGTCCACATGAGATTCCGCGGCGAAGTT
GAGGATCGCCCGCGGCTGGTGCTCGGCGAGCAGGCGGGCTACCAGCTGGCTATCGCCGATATCGCCGGCGAC
GAAGGTGTGCCGGGCGTCGCCGTCGAGGCTGGCGAGGTTCTGCCGGTTGCCGGCGTAGGTGAGCTTGTCGAG
GCTGACCACCGGCTCGTCATGCAGGGCCAGCCAGTCGAGCACGAAATTGGCGCCGATGAAGCCGGCGCTGCC
GGTCACGAGAATCGTCATGAGTCATACCTTGTTCAAGCAGTGGTTGTCCGTAGGGCTGCTTCGACACGTCCC
GCCAAGGTGTACCAATCGATCGTGAAGACGACGATTAGTACGGGAAAAATGGCGATCCTGCCAACCCCAGAT
CTGGTAGGTGCATCTGACCCGGCATTCTATTCGAAGTGCCATCACTGGGTAGAAAGGAAGCAGGATAAAACA
AAAAGCCCCGCGCGAGGCGGGGCTTTTCGGGGATTCGTGGTGCCGGCACCAGGAGTCGAACCCGGGACCTAC
TGA
Translation:
MARTILDEGDLLAIAAAVGARLLLVEDGAEGLDHVEVGLFVPAADIVGLAQLPGFEDPADGAAMVLDVEPVA
DLLAVAVDRQRLAGQGVVDHQWDELFREVVRAVVVRAVGGQHRQPVGVVIGPHQVVGGRLGRRVGTVRLVAV
VLGEGRIARCQRAIDFVGGDVEEAECRLRFRLQRAPVGAHFFQQAEGADDVGLDEVLGAVDRAVHMRFRGEV
EDRPRLVLGEQAGYQLAIADIAGDEGVPGVAVEAGEVLPVAGVGELVEADHRLVMQGQPVEHEIGADEAGAA
GHENRHESYLVQAVVVRRAASTRPAKVYQSIVKTTISTGKMAILPTPDLVGASDPAFYSKCHHWVERKQDKT
KSPARGGAFRGFVVPAPGVEPGTY*
AnnotationID:6871GeneID:6870
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 14:02:48
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits at any threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:13447




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30822




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49872How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5347019Stop: 5345865

          
Length: 1155


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGCCCGGACGATCCTTGACGAAGGTGATCTGCTCGCGATAGCTGCGGCCGTCGGCGCGCGGCTGCTCCTG 
GTCGAGGATGGCGCAGAGGGTCTCGACCACGTCGAGGTTGGCCTTTTCGTTCCAGCCGCCGACATTGTAGGT 
CTCGCCCAGTTGCCCGGCTTCGAGGACCCGGCGGATGGCGCTGCAATGGTCCTTGACGTAGAGCCAGTCGCG 
GATCTGCTGGCCGTCGCCGTAGATCGGCAGCGGCTTGCCGGCCAGGGCGTTGTGGATCACCAGTGGGATGAG 
CTTTTCCGGGAAGTGGTACGGGCCGTAGTTGTTCGAGCAGTTGGTGGTCAGCACCGGCAGCCCGTAGGTGTG 
GTGATAGGCCCGCACCAGGTGGTCGGAGGCCGCCTTGGACGCCGAGTAGGGACTGTTCGGCTCGTAGCGGTT 
GTTCTCGGTGAAGGCCGGATCGCTCGGTGCCAGCGAGCCATAGACTTCGTCGGTGGAGACGTGGAGGAAGCG 
GAATGCCGCCTTCGCTTCCGGCTCCAGCGCGCCCCAGTAGGCGCGCACTTCTTCCAGCAGGCGGAAGGTGCC 
GACGATGTTGGTCTGGATGAAGTCCTCGGGGCCGTGGATCGAGCGGTCCACATGAGATTCCGCGGCGAAGTT 
GAGGATCGCCCGCGGCTGGTGCTCGGCGAGCAGGCGGGCTACCAGCTGGCTATCGCCGATATCGCCGGCGAC 
GAAGGTGTGCCGGGCGTCGCCGTCGAGGCTGGCGAGGTTCTGCCGGTTGCCGGCGTAGGTGAGCTTGTCGAG 
GCTGACCACCGGCTCGTCATGCAGGGCCAGCCAGTCGAGCACGAAATTGGCGCCGATGAAGCCGGCGCTGCC 
GGTCACGAGAATCGTCATGAGTCATACCTTGTTCAAGCAGTGGTTGTCCGTAGGGCTGCTTCGACACGTCCC 
GCCAAGGTGTACCAATCGATCGTGAAGACGACGATTAGTACGGGAAAAATGGCGATCCTGCCAACCCCAGAT 
CTGGTAGGTGCATCTGACCCGGCATTCTATTCGAAGTGCCATCACTGGGTAGAAAGGAAGCAGGATAAAACA 
AAAAGCCCCGCGCGAGGCGGGGCTTTTCGGGGATTCGTGGTGCCGGCACCAGGAGTCGAACCCGGGACCTAC 
TGA