ViewGene
Locus Name:
GeneID:
Location:

GeneID:6867
TrivialName: PA14_67980
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67980
PAO1 Ortholog Locus:
Sequence Length:291
Protein Length:96
Start: 6067834
Stop: 6068124
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
GID 6867 (PA14_67980) replaced by GID7429 (PA14_67975). Homology: gb|AAG08531.1|AE004927_9 (AE004927) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 94/96 (97%), Positives = 96/96 (100%)
Sequence:
GTGCTGGGCATGGACTATCGCATCGGCGTGGAGATCCAGGGCGACAAGAGCGACATGCCGGACCCGGCCTGC
CAGGTCAACCAGCGCTACGCCGGCATCGAATGGCCTCTGCTCTGCCGCGGCCCGCTGGAACTCGGCGCCAAG
GCCTGCCGCCTGGACAAGGAAGGCCTGGGCAAGGTCGCCGCGAAACTGGCCGGCAATCGCCTCAACGAAAAA
CTCGAAGAGAAGCTCGGCGACAAGGTCAGTCCGGAGCTGAAAGACGCACTCAAAGGGCTGTTCAACCGCAAA
TGA
Translation:
MLGMDYRIGVEIQGDKSDMPDPACQVNQRYAGIEWPLLCRGPLELGAKACRLDKEGLGKVAAKLAGNRLNEK
LEEKLGDKVSPELKDALKGLFNRK*
AnnotationID:6868GeneID:6867
AnnotatorUID: danlee
Modification Date/Time: 2006-03-20 18:06:35
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:
GID 6867 (PA14_67980) replaced by GID7429 (PA14_67975).


















    ReferenceID:16621




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30817




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34883




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6867_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6867
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
8045
                           PA5146_tr
                           translation of PA5146
                           750
                           12.66
                           12.80
                           654
                           501.0
     

     
     
202703
                           gb|AAG08531.1|AE004927_9
                           (AE004927) hypothetical protein PA5146 [Pseudomonas aeruginosa PAO1]
                           750
                           12.66
                           12.80
                           654
                           501.0
     

     
     
202705
                           gb|AAN65918.1|AE016219_11
                           (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440]
                           749
                           10.41
                           11.61
                           654
                           407.0
     

     
     
202704
                           gb|AAO58767.1|
                           (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           742
                           10.10
                           12.12
                           647
                           414.0
     

     






      

          
GC ORFID: 49869How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5331520Stop: 5331810

          
Length: 291


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5146 translation of PA5146Homolog Bit Score 197.0

          
Other Homologs:  t_PA5146 translation of PA5146 (BLASTP 197), psyr_15may02_Scaffold6_revised_gene6942 related to: gi|15600339|ref|NP_253833.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa] pir||F83003 hypothetical protein PA5146 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG08531.1|AE004927_9 (AE004927) hypothetical protein [Pseudomonas-TRUNCATED- (BLASTP 162)

          
GC ORF Sequence

           
GTGCTGGGCATGGACTATCGCATCGGCGTGGAGATCCAGGGCGACAAGAGCGACATGCCGGACCCGGCCTGC 
CAGGTCAACCAGCGCTACGCCGGCATCGAATGGCCTCTGCTCTGCCGCGGCCCGCTGGAACTCGGCGCCAAG 
GCCTGCCGCCTGGACAAGGAAGGCCTGGGCAAGGTCGCCGCGAAACTGGCCGGCAATCGCCTCAACGAAAAA 
CTCGAAGAGAAGCTCGGCGACAAGGTCAGTCCGGAGCTGAAAGACGCACTCAAAGGGCTGTTCAACCGCAAA 
TGA