ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6866

TrivialName: PA14_67950

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_67950

PAO1 Ortholog Locus:

Sequence Length: 1746

Protein Length: 581

Start: 6065814

Stop: 6064069

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAE33372.1| (BX640445) putative membrane protein [Bordetella bronchiseptica] Identities = 44/152 (28%), Positives = 59/152 (38%), Gaps = 12/152 (7%)

Sequence:

TTGCCAGGCCGACCCTGCGCGCGGCGAAACCTCGTCTCAGAGTGCGCGGGCGACCCGTTCGGCGAGCGCCAG
GCTGGCGGTGAGGCCGGGCGACTCGATGCCGAACAGGTTGACCAGGCCGGGCAGGTCGTGTTCGGCAGGGGT
TTGGATGATGAAGTCGGCGGCGGGTTCCCCCGGCCCACCGAGCTTGGGCCGGATGCCGGCGTAGCCGGCGGC
CAGGCGCCGAGGATCGATGCCGGGGAAGTAGCGCGAGATGGCCTGGGCGAAGGTGGGGCGGAGGGATTCGTC
GACGCGGTAGTCGAGGTTGTCCACGTAATTCACGTCGGGACCGAAGCGCAACTGGCCACCGAGGTCGAGGGT
GGCGTGGATGCCGAGCCCGGCGGTGCGCGCCTCGGGCATCGGGTAGACCAgGTGGCGGAACGGCGAGCGGCC
GCTGTAGGAGAAATAGCGCCCCTGGCACAGGTGCAGCGCCGGCACCAGGCGCGGATCGAGGCCTTCGGTGCG
TTGCGCCAGCGCCTGGGCGAACAGGCCGCCGGCATTGACCACCCAGCCCGCGCGCAACCGGAACGCTTCGCC
GACGCTCTGTCCTTCGGCGCGCCAGCCGCCGGCGTGGCGCTCCAGGCGGTCGACCCGGGTGTCCAGCGCCAG
TTGTGCGCCGTGGCGCTCGGCGACGGCCTGCAGCGATTGCAGGTAGGCGTGGCTGTCGATGATTCCCGTGCT
CGGCGAGAGCAGGGCGGCGACCCCGCGGACCTGGGGCTCCAGCGCGCGCAGCGTGGTGCCGTCCAGCGGCAT
CAGGTCGTCGACCCCGCAGGCGCGGGCGTTGGCCGCCAGGGCCTGGAGCTTCTCGCGCTCGTTTTCCTCCAC
CGCCACCAGCAGCTTGCCGATGCGCCGGTGGCCGACGCCGTGGCGGGCGCACCAGGCGTACAGGCGTTCGCG
GCCTTCCAGGCAGAGATCGGCCTTGAGCGAGCCGGGCGGGTAGTAGAGGCCGGCGTGGATCACTTCGGAATT
GCGACTGGAGGTGTGGCTACCGACCAGCCGTTCGCGCTCCGCCACCAGTACGCCGTGGCCGGCTTCGGCCAG
GCGCGCGGCGCAGGCCAGGCCGAGGGCGCCGGCGCCGACTACCAGTACGTCGACGTCGTTCATGCGTCGCTG
GCTGCGCGCTGCAGCACGGTGACGATCGCTGCCCGCGCCTGCGGGCTGTTCTTCCAGCAACTGGAGCCGGTC
AGGACCGCGCCTTGGGCGAGGATACTTGCGGCATCGCAATCGCGCAGCCGGACGAAACTGTCCAGGCCCATC
TGTTCCAGGCGTTGCAGCACGGTCGGGCCGACTCCCTTGAGGGCAAGCAGGGCGGCGCGTTCGGCGGAGGAA
AAGGACATGGCGAAGCTCCGTGGCGGGGACCGTCGCCGAGCATATCAGAGGCTGTCCAGCGGCAGCCCGTGG
CGCGCGGCGAGGGCGCGGGATTCCAGGTGCCCGTCCGGGGCGACCAGGCGCAGCGGCTTGCCGGCTTCGGCG
GCCAGGCGTCGGGCTTCGTCGAGGAGGCGTCGGCCGACCCCGCGGCCGCGGGTGATGCCGCGCACGCAGAGG
TGCGACAGCTGCCAGGCGTCGCCGCCGCGCCGCAGCAGGGCGGCACCCAGCAGGCGGTCGTTGAAGCGCCCG
GCGATCAGCTCGCCGGCGGCCAGCCCGGCCGCGACCAGCGCCGCGCCGTCGGCATGCGGGGCGAACAGCCAG
TCCGGTGCGTCGGCGTAG

Translation:

MPGRPCARRNLVSECAGDPFGERQAGGEAGRLDAEQVDQAGQVVFGRGLDDEVGGGFPRPTELGPDAGVAGG
QAPRIDAGEVARDGLGEGGAEGFVDAVVEVVHVIHVGTEAQLATEVEGGVDAEPGGARLGHRVDQVAERRAA
AVGEIAPLAQVQRRHQARIEAFGALRQRLGEQAAGIDHPARAQPERFADALSFGAPAAGVALQAVDPGVQRQ
LCAVALGDGLQRLQVGVAVDDSRARREQGGDPADLGLQRAQRGAVQRHQVVDPAGAGVGRQGLELLALVFLH
RHQQLADAPVADAVAGAPGVQAFAAFQAEIGLERAGRVVEAGVDHFGIATGGVATDQPFALRHQYAVAGFGQ
ARGAGQAEGAGADYQYVDVVHASLAARCSTVTIAARACGLFFQQLEPVRTAPWARILAASQSRSRTKLSRPI
CSRRCSTVGPTPLRASRAARSAEEKDMAKLRGGDRRRAYQRLSSGSPWRAARARDSRCPSGATRRSGLPASA
ARRRASSRRRRPTPRPRVMPRTQRCDSCQASPPRRSRAAPSRRSLKRPAISSPAASPAATSAAPSACGANSQ
SGASA*

AnnotationID:6867 GeneID:6866

AnnotatorUID: diggins

Modification Date/Time: 2004-10-20 18:06:18

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16619

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30815

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:34898

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6866_cdd.html

URL:

GC ORFID: `49868`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `5329499`	Stop: `5327754`
Length: `1746`
Start Codon: `TTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCCAGGCCGACCCTGCGCGCGGCGAAACCTCGTCTCAGAGTGCGCGGGCGACCCGTTCGGCGAGCGCCAG GCTGGCGGTGAGGCCGGGCGACTCGATGCCGAACAGGTTGACCAGGCCGGGCAGGTCGTGTTCGGCAGGGGT TTGGATGATGAAGTCGGCGGCGGGTTCCCCCGGCCCACCGAGCTTGGGCCGGATGCCGGCGTAGCCGGCGGC CAGGCGCCGAGGATCGATGCCGGGGAAGTAGCGCGAGATGGCCTGGGCGAAGGTGGGGCGGAGGGATTCGTC GACGCGGTAGTCGAGGTTGTCCACGTAATTCACGTCGGGACCGAAGCGCAACTGGCCACCGAGGTCGAGGGT GGCGTGGATGCCGAGCCCGGCGGTGCGCGCCTCGGGCATCGGGTAGACCAgGTGGCGGAACGGCGAGCGGCC GCTGTAGGAGAAATAGCGCCCCTGGCACAGGTGCAGCGCCGGCACCAGGCGCGGATCGAGGCCTTCGGTGCG TTGCGCCAGCGCCTGGGCGAACAGGCCGCCGGCATTGACCACCCAGCCCGCGCGCAACCGGAACGCTTCGCC GACGCTCTGTCCTTCGGCGCGCCAGCCGCCGGCGTGGCGCTCCAGGCGGTCGACCCGGGTGTCCAGCGCCAG TTGTGCGCCGTGGCGCTCGGCGACGGCCTGCAGCGATTGCAGGTAGGCGTGGCTGTCGATGATTCCCGTGCT CGGCGAGAGCAGGGCGGCGACCCCGCGGACCTGGGGCTCCAGCGCGCGCAGCGTGGTGCCGTCCAGCGGCAT CAGGTCGTCGACCCCGCAGGCGCGGGCGTTGGCCGCCAGGGCCTGGAGCTTCTCGCGCTCGTTTTCCTCCAC CGCCACCAGCAGCTTGCCGATGCGCCGGTGGCCGACGCCGTGGCGGGCGCACCAGGCGTACAGGCGTTCGCG GCCTTCCAGGCAGAGATCGGCCTTGAGCGAGCCGGGCGGGTAGTAGAGGCCGGCGTGGATCACTTCGGAATT GCGACTGGAGGTGTGGCTACCGACCAGCCGTTCGCGCTCCGCCACCAGTACGCCGTGGCCGGCTTCGGCCAG GCGCGCGGCGCAGGCCAGGCCGAGGGCGCCGGCGCCGACTACCAGTACGTCGACGTCGTTCATGCGTCGCTG GCTGCGCGCTGCAGCACGGTGACGATCGCTGCCCGCGCCTGCGGGCTGTTCTTCCAGCAACTGGAGCCGGTC AGGACCGCGCCTTGGGCGAGGATACTTGCGGCATCGCAATCGCGCAGCCGGACGAAACTGTCCAGGCCCATC TGTTCCAGGCGTTGCAGCACGGTCGGGCCGACTCCCTTGAGGGCAAGCAGGGCGGCGCGTTCGGCGGAGGAA AAGGACATGGCGAAGCTCCGTGGCGGGGACCGTCGCCGAGCATATCAGAGGCTGTCCAGCGGCAGCCCGTGG CGCGCGGCGAGGGCGCGGGATTCCAGGTGCCCGTCCGGGGCGACCAGGCGCAGCGGCTTGCCGGCTTCGGCG GCCAGGCGTCGGGCTTCGTCGAGGAGGCGTCGGCCGACCCCGCGGCCGCGGGTGATGCCGCGCACGCAGAGG TGCGACAGCTGCCAGGCGTCGCCGCCGCGCCGCAGCAGGGCGGCACCCAGCAGGCGGTCGTTGAAGCGCCCG GCGATCAGCTCGCCGGCGGCCAGCCCGGCCGCGACCAGCGCCGCGCCGTCGGCATGCGGGGCGAACAGCCAG TCCGGTGCGTCGGCGTAG