ViewGene

Locus Name:
GeneID:
Location:

GeneID:6860
TrivialName: PA14_67660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67660
PAO1 Ortholog Locus:
Sequence Length:1419
Protein Length:472
Start: 6043740
Stop: 6045158
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens]
Identities = 123/468 (26%), Positives = 154/468 (32%), Gaps = 107/468 (22%)
Sequence:
GTGCCTGGCCTGCGCCGCGCAAGCGGGGGTCTACACCTACATCGACGCCGAGGGCAACCGCGTCTACACCGA
CCAGCCCCCCAGCGGGCGCAAGGCCCAACGCGTCGAACTGGCGCCGGGCAACAGCGTGGCGCCGCCGGGCAT
ACGCTATCGTCCGCCCGCCGCGCCGCTGGAGGTGAAGCCGCCGGCCTACCAGCTACTGCGCATCCTCTTCCC
CGAACCGGACGCAACCCTGCGCGCCAACAGCGGCGACGTCATCGTCACCGTCACCAGCGAGCCGGCGCTGCT
GCCCGGCCATCGCTATCGCCTGCTGCTCGACGGCAAGCCTGCCGGAGCGCCGGGACGCAGCCCGGTATTCCC
GTTGAAGAACCTCGATCGCGGCACCCACCAGGTCGCAGTGGAAATCATCGATGGCGACGGCATGACCGTCGA
AAGCACCCCGAGCCAGCCCTTCCACCTGCATCGAGTGAGCATCGCCGGCCAACCCCTGCCGGAGGTCGATAC
GCCGCTGGTCAGCGCGGTACAGCCGAGCGAGCGCTAGCCGAACTTCCCCTGCCCACTCCGCCGTGGGCGGGA
TTTTCCGGTTTTTTTCCCGACTCTCCTGGCGAAAACGCCGCCGGCCACGTCAACGCACCAGATTGGTGCGAT
TACCCGCACCACTTTCTATACTGTCCCCATTTCGGGTCACCGCTCGTCGCCGAAAACCTTCCCGGCGCACCT
CTAGCCAGCGCCTCGGCAGAAAAAACGCGCCTTTTCGGCGCCTGGTTTGCTTTTTGCATTTTCCTGCCCAAC
CTTGGAACAGCTGCCCGCCATGCCGACCGATACCCTGCACCGACTGTTGCTCGACAACCTGACCACCGCGGT
GATCCTGCTCAACGGCGAACTGCGCCTGGAGTACATGAACCCGGCAGCGGAGATGCTCCTGGCCGTGAGCGG
CCAGCGCAGCCACGGGCAATTCATCAGCGAGCTGTTCACCGAATCGCCGGAAGCCTTGAACTCGCTGCGCCA
GGCGGTGGAACAGGCGCATCCGTTCACCAAGCGCGAAGCGACCCTGACCTCTATCACCGGCGTCAGCATCAC
GGTCGACTATGCGGTGACGCCCATCCTCAACCGCAACGAGACGCTGCTGCTGCTCGAGGTCCATCCGCGCGA
CCGGCTGATGCGGATCACCCGCGAAGAAGCACAGCTGTCCAAACAGGAGACCACCAAGCTGCTGGTGCGCGG
GCTCGCCCACGAGATCAAGAACCCGCTCGGCGGCATCCGCGGCGCAGCGCAACTACTATCCCGCGAGCTGCC
GGAAGAGTCGCTGAAGGACTACACCAACGTCATCATCGAAGAAGCCGACCGGTTGCGGAACCTGGTGGACCG
CATGCTCGGCTCGAACAAACTGCCGAACCTGGCGCCGACCAACATCCATGA
Translation:
MPGLRRASGGLHLHRRRGQPRLHRPAPQRAQGPTRRTGAGQQRGAAGHTLSSARRAAGGEAAGLPATAHPLP
RTGRNPARQQRRRHRHRHQRAGAAARPSLSPAARRQACRSAGTQPGIPVEEPRSRHPPGRSGNHRWRRHDRR
KHPEPALPPASSEHRRPTPAGGRYAAGQRGTAERALAELPLPTPPWAGFSGFFPDSPGENAAGHVNAPDWCD
YPHHFLYCPHFGSPLVAENLPGAPLASASAEKTRLFGAWFAFCIFLPNLGTAARHADRYPAPTVARQPDHRG
DPAQRRTAPGVHEPGSGDAPGRERPAQPRAIHQRAVHRIAGSLELAAPGGGTGASVHQARSDPDLYHRRQHH
GRLCGDAHPQPQRDAAAARGPSARPADADHPRRSTAVQTGDHQAAGARARPRDQEPARRHPRRSATTIPRAA
GRVAEGLHQRHHRRSRPVAEPGGPHARLEQTAEPGADQHP*
AnnotationID:6861GeneID:6860
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 09:09:18
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:16611
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30803
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49862How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 5307425Stop: 5308843
Length: 1419
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGCCTGGCCTGCGCCGCGCAAGCGGGGGTCTACACCTACATCGACGCCGAGGGCAACCGCGTCTACACCGA
CCAGCCCCCCAGCGGGCGCAAGGCCCAACGCGTCGAACTGGCGCCGGGCAACAGCGTGGCGCCGCCGGGCAT
ACGCTATCGTCCGCCCGCCGCGCCGCTGGAGGTGAAGCCGCCGGCCTACCAGCTACTGCGCATCCTCTTCCC
CGAACCGGACGCAACCCTGCGCGCCAACAGCGGCGACGTCATCGTCACCGTCACCAGCGAGCCGGCGCTGCT
GCCCGGCCATCGCTATCGCCTGCTGCTCGACGGCAAGCCTGCCGGAGCGCCGGGACGCAGCCCGGTATTCCC
GTTGAAGAACCTCGATCGCGGCACCCACCAGGTCGCAGTGGAAATCATCGATGGCGACGGCATGACCGTCGA
AAGCACCCCGAGCCAGCCCTTCCACCTGCATCGAGTGAGCATCGCCGGCCAACCCCTGCCGGAGGTCGATAC
GCCGCTGGTCAGCGCGGTACAGCCGAGCGAGCGCTAGCCGAACTTCCCCTGCCCACTCCGCCGTGGGCGGGA
TTTTCCGGTTTTTTTCCCGACTCTCCTGGCGAAAACGCCGCCGGCCACGTCAACGCACCAGATTGGTGCGAT
TACCCGCACCACTTTCTATACTGTCCCCATTTCGGGTCACCGCTCGTCGCCGAAAACCTTCCCGGCGCACCT
CTAGCCAGCGCCTCGGCAGAAAAAACGCGCCTTTTCGGCGCCTGGTTTGCTTTTTGCATTTTCCTGCCCAAC
CTTGGAACAGCTGCCCGCCATGCCGACCGATACCCTGCACCGACTGTTGCTCGACAACCTGACCACCGCGGT
GATCCTGCTCAACGGCGAACTGCGCCTGGAGTACATGAACCCGGCAGCGGAGATGCTCCTGGCCGTGAGCGG
CCAGCGCAGCCACGGGCAATTCATCAGCGAGCTGTTCACCGAATCGCCGGAAGCCTTGAACTCGCTGCGCCA
GGCGGTGGAACAGGCGCATCCGTTCACCAAGCGCGAAGCGACCCTGACCTCTATCACCGGCGTCAGCATCAC
GGTCGACTATGCGGTGACGCCCATCCTCAACCGCAACGAGACGCTGCTGCTGCTCGAGGTCCATCCGCGCGA
CCGGCTGATGCGGATCACCCGCGAAGAAGCACAGCTGTCCAAACAGGAGACCACCAAGCTGCTGGTGCGCGG
GCTCGCCCACGAGATCAAGAACCCGCTCGGCGGCATCCGCGGCGCAGCGCAACTACTATCCCGCGAGCTGCC
GGAAGAGTCGCTGAAGGACTACACCAACGTCATCATCGAAGAAGCCGACCGGTTGCGGAACCTGGTGGACCG
CATGCTCGGCTCGAACAAACTGCCGAACCTGGCGCCGACCAACATCCATGA