ViewGene
Locus Name:
GeneID:
Location:

GeneID:6858
TrivialName: PA14_67590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67590
PAO1 Ortholog Locus:
Sequence Length:1479
Protein Length:492
Start: 6040113
Stop: 6038635
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAB61771.1| (M84113) ORF1 [Neisseria gonorrhoeae]
Identities = 201/444 (45%), Positives = 248/444 (55%), Gaps = 2/444 (0%)
Sequence:
GTGCACGAAGGTGCGCACCTTGATCTCTTCTTCGCTCTTCAGCTCGATGTAGGCATCGATGAACTCGTCGGT
GAACACGCCGCCCTTGGTCAGGAACGCGCGGCCCTTGTCGAGTTCTTCCAGCGCCTCTTTCAGGCTGCCGCA
AACCTGCGGGATTTCCTTCGCCTCTTCCGGCGGCAGGTCGTACAGGTTCTTGTCGGCGGCATCGCCGGGGTG
GATCTTGTTCTGGATGCCGTCCAGGCCGGCCATCAGCAGCGCGGCGAAGGCCAGGTAGGGGTTGGCTGCCGG
GTCCGGGAAGCGCGCTTCGATACGGCGGGCCTTCGGGCTGGATACGTAGGGGATACGGATCGAGGCGGAACG
GTTGCGCGCCGAGTAGGCCAGCATCACCGGAGCTTCGAAGCCCGGGACCAGGCGCTTGTAGGAGTTGGTCGA
GGGGTTGGTGAAGCCGTTCAGGGCCTTGCCGTGCTTGATGATGCCGCCGATGAAGTACAGGGCGGTCTCGGA
CAGGCCGGCATAGCCTTCGCCGGCGAAGGTGTTCTTGCCGTCCTTGGAGATCGACATGTGCACGTGCATGCC
CGAACCGTTGTCGCCGTACAGCGGCTTCGGCATGAAGGTCACGGTCTTGCCGTAGGCGTCGGCGACGTTGTG
CACGCAGTACTTCAGGGTCTGCACTTCGTCGGCCTTGGCGACCAGGGTGTTGAACTTCACGCCGATCTCGTT
CTGGCCGGCGGTTGCCACTTCGTGGTGGTGGACTTCGACCACCAGGCCCATTTCTTCCAGGGCGTTGCACAT
GGCGGTGCGGATTTCATGGTCGTGGTCGACCGGCGGTACCGGGAAGTAGCCGCCCTTCACGCCCGGGCGATG
GCCCTTGTTGCCGGACTCGATGTCGGCGTCGGTGTTCCAGGAAGCCTGCTCGGAGAAGATCTTGAACATCGA
GCCGGAGATGTCGGACTTGAACTTCACTTCGTCGAAGATGAAGAACTCCGGCTCCGGGCCGACGAACACGGT
GTCGCCGATGCCGGTGGACTTCAGGTACTCCTCGGCGCGCTTGGCGATGTTGCGCGGGTCGCGCTCGTAGCC
TTGCATGGTGCTCGGCTCGATGATGTCGCAGACCAGGATCAGGGTCGGCTCTTCGGTGAACGGATCGAGGAC
GGCGGTGCTGTCGTCCGGCATCAGGATCATGTCGGAGGCTTCGATGCCTTTCCAGCCGGCGATGGAGGAGCC
GTCGAACATCTTGCCGGCTTCGAAGAACTCATCGTCCAGCGCGTCGCGAGCCGGCATGGTGACGTGTTGCTG
CTTGCCCTTGGTATCGGTGAAGCGCAGGTCTACCCACTTCACGTCATGGTCTTTGATCAGTTGGTGCGACTT
GTACGACATGCTGTCCTCCAGGAGGGATTAGAGCTGGGAGCTTTTTCTGTGCCCCAGTATCGGGTGATGCCG
GCCGGAATACTCCGCCAGGGCAACCTGCCTCACAAGTGA
Translation:
MHEGAHLDLFFALQLDVGIDELVGEHAALGQERAALVEFFQRLFQAAANLRDFLRLFRRQVVQVLVGGIAGV
DLVLDAVQAGHQQRGEGQVGVGCRVREARFDTAGLRAGYVGDTDRGGTVARRVGQHHRSFEARDQALVGVGR
GVGEAVQGLAVLDDAADEVQGGLGQAGIAFAGEGVLAVLGDRHVHVHARTVVAVQRLRHEGHGLAVGVGDVV
HAVLQGLHFVGLGDQGVELHADLVLAGGCHFVVVDFDHQAHFFQGVAHGGADFMVVVDRRYREVAALHARAM
ALVAGLDVGVGVPGSLLGEDLEHRAGDVGLELHFVEDEELRLRADEHGVADAGGLQVLLGALGDVARVALVA
LHGARLDDVADQDQGRLFGERIEDGGAVVRHQDHVGGFDAFPAGDGGAVEHLAGFEELIVQRVASRHGDVLL
LALGIGEAQVYPLHVMVFDQLVRLVRHAVLQEGLELGAFSVPQYRVMPAGILRQGNLPHK*
AnnotationID:6859GeneID:6858
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 08:08:39
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:16607




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30799




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6858
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
202702
                           gb|AAB61771.1|
                           (M84113) ORF1 [Neisseria gonorrhoeae]
                           514
                           40.66
                           50.77
                           44
                           819.0
     

     






      

          
GC ORFID: 49860How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5303798Stop: 5302320

          
Length: 1479


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold6_revised_gene6547 related to: gi|150352|gb|AAB61771.1| (M84113) ORF1 [Neisseria gonorrhoeae]Homolog Bit Score 619.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6547 related to: gi|150352|gb|AAB61771.1| (M84113) ORF1 [Neisseria gonorrhoeae] (BLASTP 619)

          
GC ORF Sequence

           
GTGCACGAAGGTGCGCACCTTGATCTCTTCTTCGCTCTTCAGCTCGATGTAGGCATCGATGAACTCGTCGGT 
GAACACGCCGCCCTTGGTCAGGAACGCGCGGCCCTTGTCGAGTTCTTCCAGCGCCTCTTTCAGGCTGCCGCA 
AACCTGCGGGATTTCCTTCGCCTCTTCCGGCGGCAGGTCGTACAGGTTCTTGTCGGCGGCATCGCCGGGGTG 
GATCTTGTTCTGGATGCCGTCCAGGCCGGCCATCAGCAGCGCGGCGAAGGCCAGGTAGGGGTTGGCTGCCGG 
GTCCGGGAAGCGCGCTTCGATACGGCGGGCCTTCGGGCTGGATACGTAGGGGATACGGATCGAGGCGGAACG 
GTTGCGCGCCGAGTAGGCCAGCATCACCGGAGCTTCGAAGCCCGGGACCAGGCGCTTGTAGGAGTTGGTCGA 
GGGGTTGGTGAAGCCGTTCAGGGCCTTGCCGTGCTTGATGATGCCGCCGATGAAGTACAGGGCGGTCTCGGA 
CAGGCCGGCATAGCCTTCGCCGGCGAAGGTGTTCTTGCCGTCCTTGGAGATCGACATGTGCACGTGCATGCC 
CGAACCGTTGTCGCCGTACAGCGGCTTCGGCATGAAGGTCACGGTCTTGCCGTAGGCGTCGGCGACGTTGTG 
CACGCAGTACTTCAGGGTCTGCACTTCGTCGGCCTTGGCGACCAGGGTGTTGAACTTCACGCCGATCTCGTT 
CTGGCCGGCGGTTGCCACTTCGTGGTGGTGGACTTCGACCACCAGGCCCATTTCTTCCAGGGCGTTGCACAT 
GGCGGTGCGGATTTCATGGTCGTGGTCGACCGGCGGTACCGGGAAGTAGCCGCCCTTCACGCCCGGGCGATG 
GCCCTTGTTGCCGGACTCGATGTCGGCGTCGGTGTTCCAGGAAGCCTGCTCGGAGAAGATCTTGAACATCGA 
GCCGGAGATGTCGGACTTGAACTTCACTTCGTCGAAGATGAAGAACTCCGGCTCCGGGCCGACGAACACGGT 
GTCGCCGATGCCGGTGGACTTCAGGTACTCCTCGGCGCGCTTGGCGATGTTGCGCGGGTCGCGCTCGTAGCC 
TTGCATGGTGCTCGGCTCGATGATGTCGCAGACCAGGATCAGGGTCGGCTCTTCGGTGAACGGATCGAGGAC 
GGCGGTGCTGTCGTCCGGCATCAGGATCATGTCGGAGGCTTCGATGCCTTTCCAGCCGGCGATGGAGGAGCC 
GTCGAACATCTTGCCGGCTTCGAAGAACTCATCGTCCAGCGCGTCGCGAGCCGGCATGGTGACGTGTTGCTG 
CTTGCCCTTGGTATCGGTGAAGCGCAGGTCTACCCACTTCACGTCATGGTCTTTGATCAGTTGGTGCGACTT 
GTACGACATGCTGTCCTCCAGGAGGGATTAGAGCTGGGAGCTTTTTCTGTGCCCCAGTATCGGGTGATGCCG 
GCCGGAATACTCCGCCAGGGCAACCTGCCTCACAAGTGA