ViewGene
Locus Name:
GeneID:
Location:

GeneID:6849
TrivialName: PA14_67080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67080
PAO1 Ortholog Locus:
Sequence Length:1569
Protein Length:522
Start: 5988223
Stop: 5989791
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAA35847.1| (D90742) unnamed protein product [Escherichia coli K12]
Identities = 31/81 (38%), Positives = 43/81 (53%)
Sequence:
GTGGATGGGTTATTCATCGGCAGGCAGCTGATAGCTCCAGGTTTCGCTCAGTGGCTTCTGCGCCTCGTCGAC
CAGCGCCGCGCGCATTTCCACCGGCTTCTTCGGATCCTTGACCTTGATCCGCAGCGTCAGGCGCCAGCCTTT
CAGGACCGGGTTGTAACGCAGGCTGTTCTCCACCACCTCGGCGTTGCTGTCGGTGCTGACCTGGGTGGTCAC
CGGCGCGTCCGGCGCCAGGTCCTTCAGGGCCGGCCCTTCGAAGTCGACGACCAGGGCGGTGCTGCCGTCCTG
CTGGCGGATCAGGTTCTTCTGCTTCACGTCGCCGACCGAGCGCATGGTCTGCTTGACCCAGGAGGATTTCGG
GTCGTGCAGCTCGTCTTCATCCATGGTCCAGTGCAGGCGGTAGGCGAAGTCCAGCGGCTTTCCGACCTCAGG
CTGGGTCTCGGGGTTCCAGAACGCGACGATATTGTCGTTGGTTTCGTCCGGGGTCGGGATTTCCACCAGTTC
CACGGTGCCCTTGCCCCAGTCGCCCTTCGGCTCGATCCAGGCGCTCGGACGCAGGTCGTAGCGGTCGTCCAG
GTCTTCGTAGCGGGAGAACTCGCGGCCGCGCTGGAGCAGGCCGAAGCCTTTCGGGTTCTCCACGCTGAAGGT
GCTCACCGACAGGTGCTTCGGATTGTTCAGCGGACGCCACAGCCACTCGCCGTTGCCGGCATGGATCTGCAG
ACCGCTAGAGTCATGCAGCTCGGGCCGGAAGTTGTGCTGCTCGGACGGCTGGTTGGAGCCGAACAGGTACAT
GCTGGTCAGCGGCGCCAGGCCCAGTTTGCTGACCTTGTCGCGGAGGAACACGCGGGCTTGGACATCCATCAC
CGCATCCTTGCCCGGACGCAGCACGAAGCGGTAGGCGCCGGTGGCCCGCGGCGAGTCGAGCAGGGCGTAGAT
CACCAGTTGCTTGTCCTGCGCCTTCGGCCGCTCGATCCAGAATTCGCGGAAGCGCGGGAACTCTTCGCCCGA
AGGCAGCGCGGTATCGATCGCCAGGCCGCGCGCCGACAGACCGTAGACCTGGCCCTTGCCGACCACGCGGAA
GTAGCTCGCGCCAAGGAAGGTGGCGATCTCGTCCTGCTTGTCGGCCTTGTTGATCGGATAGAGCACGCGGAA
ACCGGCATAGCCGAGATCCTTGGTGGCATTCTCGTCGAACTTCAGGGATCCGAAATCGAATTTGGTGCGATC
GTACTTGATCGGCTTGACCGTGGTAGCGGTCACCTCGTTGATCTTCACCGGCGTGTCGAAGTGCATGCCCTG
GTGATAGAAGCTCAGCTTGAACGGCGTCTTCAGCTTGCCCCAGTAGGCGCGCTCGTTGATAAAACGGATCTG
CTGGTAATCGGCGAATTTCATTTCGCTGAATTCCGATGGCAGGTTGCTGGTCGGCGCGGAATACTTGTCGCC
GGCCAGGTCCTTGGCCTTGCTCGCCACGTCGTCGATGCTGAACGCCCATACCGGGGCGGCGACGAATGCCAG
CGCGGTCGAGCCGGCAAGCAGCAGGGTGCGCACGCGGGCGCGGAAATCGGTGTTTGA
Translation:
MDGLFIGRQLIAPGFAQWLLRLVDQRRAHFHRLLRILDLDPQRQAPAFQDRVVTQAVLHHLGVAVGADLGGH
RRVRRQVLQGRPFEVDDQGGAAVLLADQVLLLHVADRAHGLLDPGGFRVVQLVFIHGPVQAVGEVQRLSDLR
LGLGVPERDDIVVGFVRGRDFHQFHGALAPVALRLDPGARTQVVAVVQVFVAGELAAALEQAEAFRVLHAEG
AHRQVLRIVQRTPQPLAVAGMDLQTARVMQLGPEVVLLGRLVGAEQVHAGQRRQAQFADLVAEEHAGLDIHH
RILARTQHEAVGAGGPRRVEQGVDHQLLVLRLRPLDPEFAEARELFARRQRGIDRQAARRQTVDLALADHAE
VARAKEGGDLVLLVGLVDRIEHAETGIAEILGGILVELQGSEIEFGAIVLDRLDRGSGHLVDLHRRVEVHAL
VIEAQLERRLQLAPVGALVDKTDLLVIGEFHFAEFRWQVAGRRGILVAGQVLGLARHVVDAERPYRGGDECQ
RGRAGKQQGAHAGAEIGV*
AnnotationID:6850GeneID:6849
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 06:06:16
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:16600




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30781




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49851How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5251908Stop: 5253476

          
Length: 1569


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold2_revised_gene3806 related to: gi|4062619|dbj|BAA35839.1| (D90741) ORF_ID:o232#7 [Escherichia coli] dbj|BAA35847.1| (D90742) ORF_ID:o232#7 [Escherichia coli]Homolog Bit Score 426.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3806 related to: gi|4062619|dbj|BAA35839.1| (D90741) ORF_ID:o232#7 [Escherichia coli] dbj|BAA35847.1| (D90742) ORF_ID:o232#7 [Escherichia coli] (BLASTP 426)

          
GC ORF Sequence

           
GTGGATGGGTTATTCATCGGCAGGCAGCTGATAGCTCCAGGTTTCGCTCAGTGGCTTCTGCGCCTCGTCGAC 
CAGCGCCGCGCGCATTTCCACCGGCTTCTTCGGATCCTTGACCTTGATCCGCAGCGTCAGGCGCCAGCCTTT 
CAGGACCGGGTTGTAACGCAGGCTGTTCTCCACCACCTCGGCGTTGCTGTCGGTGCTGACCTGGGTGGTCAC 
CGGCGCGTCCGGCGCCAGGTCCTTCAGGGCCGGCCCTTCGAAGTCGACGACCAGGGCGGTGCTGCCGTCCTG 
CTGGCGGATCAGGTTCTTCTGCTTCACGTCGCCGACCGAGCGCATGGTCTGCTTGACCCAGGAGGATTTCGG 
GTCGTGCAGCTCGTCTTCATCCATGGTCCAGTGCAGGCGGTAGGCGAAGTCCAGCGGCTTTCCGACCTCAGG 
CTGGGTCTCGGGGTTCCAGAACGCGACGATATTGTCGTTGGTTTCGTCCGGGGTCGGGATTTCCACCAGTTC 
CACGGTGCCCTTGCCCCAGTCGCCCTTCGGCTCGATCCAGGCGCTCGGACGCAGGTCGTAGCGGTCGTCCAG 
GTCTTCGTAGCGGGAGAACTCGCGGCCGCGCTGGAGCAGGCCGAAGCCTTTCGGGTTCTCCACGCTGAAGGT 
GCTCACCGACAGGTGCTTCGGATTGTTCAGCGGACGCCACAGCCACTCGCCGTTGCCGGCATGGATCTGCAG 
ACCGCTAGAGTCATGCAGCTCGGGCCGGAAGTTGTGCTGCTCGGACGGCTGGTTGGAGCCGAACAGGTACAT 
GCTGGTCAGCGGCGCCAGGCCCAGTTTGCTGACCTTGTCGCGGAGGAACACGCGGGCTTGGACATCCATCAC 
CGCATCCTTGCCCGGACGCAGCACGAAGCGGTAGGCGCCGGTGGCCCGCGGCGAGTCGAGCAGGGCGTAGAT 
CACCAGTTGCTTGTCCTGCGCCTTCGGCCGCTCGATCCAGAATTCGCGGAAGCGCGGGAACTCTTCGCCCGA 
AGGCAGCGCGGTATCGATCGCCAGGCCGCGCGCCGACAGACCGTAGACCTGGCCCTTGCCGACCACGCGGAA 
GTAGCTCGCGCCAAGGAAGGTGGCGATCTCGTCCTGCTTGTCGGCCTTGTTGATCGGATAGAGCACGCGGAA 
ACCGGCATAGCCGAGATCCTTGGTGGCATTCTCGTCGAACTTCAGGGATCCGAAATCGAATTTGGTGCGATC 
GTACTTGATCGGCTTGACCGTGGTAGCGGTCACCTCGTTGATCTTCACCGGCGTGTCGAAGTGCATGCCCTG 
GTGATAGAAGCTCAGCTTGAACGGCGTCTTCAGCTTGCCCCAGTAGGCGCGCTCGTTGATAAAACGGATCTG 
CTGGTAATCGGCGAATTTCATTTCGCTGAATTCCGATGGCAGGTTGCTGGTCGGCGCGGAATACTTGTCGCC 
GGCCAGGTCCTTGGCCTTGCTCGCCACGTCGTCGATGCTGAACGCCCATACCGGGGCGGCGACGAATGCCAG 
CGCGGTCGAGCCGGCAAGCAGCAGGGTGCGCACGCGGGCGCGGAAATCGGTGTTTGA