ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6845

TrivialName: PA14_66930

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_66930

PAO1 Ortholog Locus:

Sequence Length: 1623

Protein Length: 540

Start: 5975559

Stop: 5977181

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 165/487 (33%), Positives = 189/487 (38%), Gaps = 98/487 (20%)

Sequence:

GTGGCTGCGCCTGCTCGGTGCCACCCTGCCCTGGCGCTGGCTGCCGCGGCGCAAGCTGGAACTGACCCGCGG
CGCGCGCCTGCGCCTGGCGCTGCAGGACCTCGGACCGATCTTCATCAAGTTCGGCCAGATTCTCTCCACCCG
CCGCGACCTGCTGCCCGACGACATCGCCAACGAACTGGCCTGGCTGCAGGACAAGGTGCCGCCCTTCCCGCC
GGAGCTGGCGGTCAAGCGCATCGAGGAACAACTGGGCGCGAAGATCGAACAGGTCTTCGCCCGCTTCGAACG
CGAACCGCTGGCCTCTGCCTCGGTGGCCCAGGTCCACGCCGCGCGGCTGAAGAGCGGCGAGGAAGTGGTGGT
GAAGGTGATCCGGCCGAACCTGGAACCGGTGATCCGCTCCGACATCGCCTGGCTGTTCATCCTCGCCCGCCT
CGCCGAGCGGGTCTCCAGCGAGGCGCGGCGCCTGCACCCCGTGGAAGTGGTCAGCGACTACGAGAAAACCAT
CGTCGACGAACTCGACCTGCTCCGCGAGGCAGCCAACGCCTCGCAGCTGCGGCGCAACTTCGAAGGCTCGCC
GCTGCTCTACGTGCCACAGGTCTACTGGGACTGGTGCCGGCCCAAGGTGCTGGTGATGGAGCGCATCTACGG
CATCCCGGTGACCGACCTGGAAACCCTGCGCGACCAGCGCACCGACTTCAAGGCACTGGCCGAGCGCGGCGT
GGAGATCTTCTTCACCCAGGTGTTCCGCGACAGCTTCTTCCATGCCGACATGCACCCCGGCAACATCTTCGT
CAGCACCCGCGCGCCCTGGAGCCCGCAATACATCGCGGTGGACTGCGGCATCGTCGGCAGCCTGACCGACGA
GGACCAGGACTACCTGGCGCGCAACCTGATCGCCTTCTTCAAGCGCGACTACCGCAAGGTCGCCCAACTGCA
TATCGACTCCGGCTGGGTCCCGGCGGAAACCAAGGTCAACGACTTCGAGGCGGCGATCCGTACCGTCTGCGA
ACCGATCTTCGAGAAGCCGCTGAAGGACATCTCCTTCGGCCAGGTCCTGCTGCGCCTGTTCCAGACCGCGCG
TCGTTTCAACATGGAGATCCAGCCGCAACTGGTGCTGCTGCAGAAGACCCTGCTGAACATCGAAGGCCTCGG
CCGCCAGCTCTACCCGGAACTCGACCTGTGGGCCACCGCCCAGCCGTTCCTGGAGCGCTGGATGCGCGAACG
GGTCAGCCCGAAGCAGTTGCTGCGCAATTTCCAGCAACAGGTCGAGCAGGTGCCGCACCTGTCGCAAATGGC
CCGCGACACCCTCGAACGCCTGTCACAACCGCACGCCCACAATGCGCCGCCGCCGGAGTGGAAAGGTTCCCG
CCACGACTGGCTCGGGCGCCTGGTGGGCGCGGTGCTGCTGGTCGGCGCCGCCGAGGTCGGCCTGGGTCAGCA
GCTGGAAGCCTGGCCGGCGTGGGTGATGCTGGCCGGCGGGGTGTTCCTGATCCTGCGCCGCTAGCGCCGCGC
ACGGCCACTAGGCCCGCGCCGATAGCCAGTCGCGCTCCCGGCTGGCACACTACTCCCATTTCCGCCGGAAAC
GCACGCAACGTACCGGCAACGAACGTGGAAAGACCATGA

Translation:

MAAPARCHPALALAAAAQAGTDPRRAPAPGAAGPRTDLHQVRPDSLHPPRPAARRHRQRTGLAAGQGAALPA
GAGGQAHRGTTGREDRTGLRPLRTRTAGLCLGGPGPRRAAEERRGSGGEGDPAEPGTGDPLRHRLAVHPRPP
RRAGLQRGAAPAPRGSGQRLRENHRRRTRPAPRGSQRLAAAAQLRRLAAALRATGLLGLVPAQGAGDGAHLR
HPGDRPGNPARPAHRLQGTGRARRGDLLHPGVPRQLLPCRHAPRQHLRQHPRALEPAIHRGGLRHRRQPDRR
GPGLPGAQPDRLLQARLPQGRPTAYRLRLGPGGNQGQRLRGGDPYRLRTDLREAAEGHLLRPGPAAPVPDRA
SFQHGDPAATGAAAEDPAEHRRPRPPALPGTRPVGHRPAVPGALDARTGQPEAVAAQFPATGRAGAAPVANG
PRHPRTPVTTARPQCAAAGVERFPPRLARAPGGRGAAGRRRRGRPGSAAGSLAGVGDAGRRGVPDPAPLAPR
TATRPAPIASRAPGWHTTPISAGNARNVPATNVERP*

AnnotationID:6846 GeneID:6845

AnnotatorUID: diggins

Modification Date/Time: 2004-10-23 19:07:57

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16598

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30773

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:34939

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6845_cdd.html

URL:

GC ORFID: `49847`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `5239243`	Stop: `5240865`
Length: `1623`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGGCTGCGCCTGCTCGGTGCCACCCTGCCCTGGCGCTGGCTGCCGCGGCGCAAGCTGGAACTGACCCGCGG CGCGCGCCTGCGCCTGGCGCTGCAGGACCTCGGACCGATCTTCATCAAGTTCGGCCAGATTCTCTCCACCCG CCGCGACCTGCTGCCCGACGACATCGCCAACGAACTGGCCTGGCTGCAGGACAAGGTGCCGCCCTTCCCGCC GGAGCTGGCGGTCAAGCGCATCGAGGAACAACTGGGCGCGAAGATCGAACAGGTCTTCGCCCGCTTCGAACG CGAACCGCTGGCCTCTGCCTCGGTGGCCCAGGTCCACGCCGCGCGGCTGAAGAGCGGCGAGGAAGTGGTGGT GAAGGTGATCCGGCCGAACCTGGAACCGGTGATCCGCTCCGACATCGCCTGGCTGTTCATCCTCGCCCGCCT CGCCGAGCGGGTCTCCAGCGAGGCGCGGCGCCTGCACCCCGTGGAAGTGGTCAGCGACTACGAGAAAACCAT CGTCGACGAACTCGACCTGCTCCGCGAGGCAGCCAACGCCTCGCAGCTGCGGCGCAACTTCGAAGGCTCGCC GCTGCTCTACGTGCCACAGGTCTACTGGGACTGGTGCCGGCCCAAGGTGCTGGTGATGGAGCGCATCTACGG CATCCCGGTGACCGACCTGGAAACCCTGCGCGACCAGCGCACCGACTTCAAGGCACTGGCCGAGCGCGGCGT GGAGATCTTCTTCACCCAGGTGTTCCGCGACAGCTTCTTCCATGCCGACATGCACCCCGGCAACATCTTCGT CAGCACCCGCGCGCCCTGGAGCCCGCAATACATCGCGGTGGACTGCGGCATCGTCGGCAGCCTGACCGACGA GGACCAGGACTACCTGGCGCGCAACCTGATCGCCTTCTTCAAGCGCGACTACCGCAAGGTCGCCCAACTGCA TATCGACTCCGGCTGGGTCCCGGCGGAAACCAAGGTCAACGACTTCGAGGCGGCGATCCGTACCGTCTGCGA ACCGATCTTCGAGAAGCCGCTGAAGGACATCTCCTTCGGCCAGGTCCTGCTGCGCCTGTTCCAGACCGCGCG TCGTTTCAACATGGAGATCCAGCCGCAACTGGTGCTGCTGCAGAAGACCCTGCTGAACATCGAAGGCCTCGG CCGCCAGCTCTACCCGGAACTCGACCTGTGGGCCACCGCCCAGCCGTTCCTGGAGCGCTGGATGCGCGAACG GGTCAGCCCGAAGCAGTTGCTGCGCAATTTCCAGCAACAGGTCGAGCAGGTGCCGCACCTGTCGCAAATGGC CCGCGACACCCTCGAACGCCTGTCACAACCGCACGCCCACAATGCGCCGCCGCCGGAGTGGAAAGGTTCCCG CCACGACTGGCTCGGGCGCCTGGTGGGCGCGGTGCTGCTGGTCGGCGCCGCCGAGGTCGGCCTGGGTCAGCA GCTGGAAGCCTGGCCGGCGTGGGTGATGCTGGCCGGCGGGGTGTTCCTGATCCTGCGCCGCTAGCGCCGCGC ACGGCCACTAGGCCCGCGCCGATAGCCAGTCGCGCTCCCGGCTGGCACACTACTCCCATTTCCGCCGGAAAC GCACGCAACGTACCGGCAACGAACGTGGAAAGACCATGA