ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6844

TrivialName: PA14_66860

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_66860

PAO1 Ortholog Locus:

Sequence Length: 1629

Protein Length: 542

Start: 5971507

Stop: 5973134

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: TRUE

Missense Discrepancy: TRUE

Comments:
Homology: dbj|BAB54265.1| (AP003012) unknown protein [Mesorhizobium loti] Identities = 107/227 (47%), Positives = 118/227 (51%), Gaps = 27/227 (11%)

Sequence:

ATGCTCGCTGTTGCTGTTCAACGAACAGGGCGAACCCAACGTCTCGACACTGGAAATCGCCAACGAACTGGG
CATCAGCCCGGGCAATCTCTACTACCACTTCCATGGCAAGGAACCGCTGGTGATGGCGCTGTTCGAGCGGTT
CCAGGCCGAGTTGGCGCCGCTGCTCGATCCGCCCGAGGAGGTGCGCCTGGGCGCGGAGGACTACTGGCTGTT
CCTGCATCTGATCGTCGAGCGCCTCGCCCACTACCGCTTCCTGTTCCAGGACCTGTCCAACCTGACCGGGCG
CCTGCCACGGCTGGCTCGCGGCATCCGTACCTGGCTCGGCGCGCTGAAGCGGACCCTGGCCACCCTGTTGGC
CCGCCTAAAGACCGACCGGCAGTTGCGCAGCGATGCGCCGGCACTCGGGCAACTGGTCGAACAGATCACCCT
GACCCTGCTGTTCTCCTTGGATTACCAGCGGGTACTGGGCAGCAAGGGCGAGGTGCGCACGGTGGTCTACCA
GATCATGATGCTGGTCGCCCCGCATCTGCGCAGCGAGGCCCAACGCTCGGCGGAAAGCCTGGCGCAGCGCTA
CCTGGGACCGGAATGAAAAACGCCCGGCGAGTGCCGGGCGTGTGCGTTGCCGCCAGGACTCAGCCCTGGCTG
CTCGGCGTCGCCGGAGCGTTCGCTGCCGGAGCGCTGGCAGCCGGTGTGGCGGCGGGGGCAGCGGGCGCGCTC
GAAGACGCGGCGGGAGCGGCCGGTTTCGCCGCGGCGGGCTTGGCGGCCGGCTTCTTCGCCGCAGGCTTTTTC
GCAGCCGGCTTGGCGGCAGGCTTCGCCGCGGGCTTGGCGGCGGTCGCAGCGGCCGGCTTGGCTGCCGGCTTC
GCGGCGGGCTTGGCTGCGGCAGGTTTCGCAGCAGGCTTCGCCGCAGCCTTGGCTGCCGGCTTGGCCGCCGGT
TTCGCGGCGGCCTTCGCAGCCGGTTTGGCGGCGGGCTTGGCTGCCGGCTTGGCGGCCGCGGTCTTCGCTGCA
GGTTTTTTCGCCGCGGGTTTCGCCGCAGGCTTGGCGGCGGCCTTGGCTGCCGGTTTAGCTGCCGGCTTGGCC
GCTGCGGTTTTCGCCGCGGGCTTGGCAGCCGGTTTCGCCGCAGGCTTGGCCGCtgcCTTCGCCGCCGGgcTT
GAcgCtGACGCCGGTGAGTTTCTCGATCTGCCTGGTCAGCGTATCGACCTTGCCGTGCAGCTCCTTCACCTC
GTTGCGGCTCGGCACGCCGAGACGCGAGATGGCGCTGTTCAGGCGCTTGTCGAAAGCTTCCTCGAGCTCGCT
CCACTTGCCAAGCGCACGATCCCGAACCTCGTCAACCTTGCTCTTCGCAGAGCGGGCGGAAGCCTTCGCCGC
ACCGACCTGCGCGTCCACATCGGACTTCGCTTCTTTTTCAGCCTTCTCGCCGTCTTTCACCAAGGTCTCGAA
CAGCTTGCTGCCGTCCTTGCTGACCTTCGAGTAGGCCCCCAGACCAGCCAGCCAGATCTGCCGCGAGTATTT
CTCGATCTCGCCGATCCAACTGGACTCTTTTTCGCTCTTCTTCTTGCCAGCCATCCTGCTCTCCTTATTGGG
TTCTCGCGACACGCTCGAGCACTGCGCTCAGCTCATCCAGCTTAG

Translation:

MLAVAVQRTGRTQRLDTGNRQRTGHQPGQSLLPLPWQGTAGDGAVRAVPGRVGAAARSARGGAPGRGGLLAV
PASDRRAPRPLPLPVPGPVQPDRAPATAGSRHPYLARRAEADPGHPVGPPKDRPAVAQRCAGTRATGRTDHP
DPAVLLGLPAGTGQQGRGAHGGLPDHDAGRPASAQRGPTLGGKPGAALPGTGMKNARRVPGVCVAARTQPWL
LGVAGAFAAGALAAGVAAGAAGALEDAAGAAGFAAAGLAAGFFAAGFFAAGLAAGFAAGLAAVAAAGLAAGF
AAGLAAAGFAAGFAAALAAGLAAGFAAAFAAGLAAGLAAGLAAAVFAAGFFAAGFAAGLAAALAAGLAAGLA
AAVFAAGLAAGFAAGLAAAFAAGLDADAGEFLDLPGQRIDLAVQLLHLVAARHAETRDGAVQALVESFLELA
PLAKRTIPNLVNLALRRAGGSLRRTDLRVHIGLRFFFSLLAVFHQGLEQLAAVLADLRVGPQTSQPDLPRVF
LDLADPTGLFFALLLASHPALLIGFSRHARALRSAHPA*

AnnotationID:6845 GeneID:6844

AnnotatorUID: diggins

Modification Date/Time: 2004-10-23 19:07:10

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:13402

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30771

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:34941

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6844_cdd.html

URL:

Homologs By Global Alignment

Gene ID:6844

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

202657 dbj|BAB54265.1| (AP003012) unknown protein [Mesorhizobium loti] 575 24.17 26.60 301 331.0

GC ORFID: `49846`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `5235190`	Stop: `5236818`
Length: `1629`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCTCGCTGTTGCTGTTCAACGAACAGGGCGAACCCAACGTCTCGACACTGGAAATCGCCAACGAACTGGG CATCAGCCCGGGCAATCTCTACTACCACTTCCATGGCAAGGAACCGCTGGTGATGGCGCTGTTCGAGCGGTT CCAGGCCGAGTTGGCGCCGCTGCTCGATCCGCCCGAGGAGGTGCGCCTGGGCGCGGAGGACTACTGGCTGTT CCTGCATCTGATCGTCGAGCGCCTCGCCCACTACCGCTTCCTGTTCCAGGACCTGTCCAACCTGACCGGGCG CCTGCCACGGCTGGCTCGCGGCATCCGTACCTGGCTCGGCGCGCTGAAGCGGACCCTGGCCACCCTGTTGGC CCGCCTAAAGACCGACCGGCAGTTGCGCAGCGATGCGCCGGCACTCGGGCAACTGGTCGAACAGATCACCCT GACCCTGCTGTTCTCCTTGGATTACCAGCGGGTACTGGGCAGCAAGGGCGAGGTGCGCACGGTGGTCTACCA GATCATGATGCTGGTCGCCCCGCATCTGCGCAGCGAGGCCCAACGCTCGGCGGAAAGCCTGGCGCAGCGCTA CCTGGGACCGGAATGAAAAACGCCCGGCGAGTGCCGGGCGTGTGCGTTGCCGCCAGGACTCAGCCCTGGCTG CTCGGCGTCGCCGGAGCGTTCGCTGCCGGAGCGCTGGCAGCCGGTGTGGCGGCGGGGGCAGCGGGCGCGCTC GAAGACGCGGCGGGAGCGGCCGGTTTCGCCGCGGCGGGCTTGGCGGCCGGCTTCTTCGCCGCAGGCTTTTTC GCAGCCGGCTTGGCGGCAGGCTTCGCCGCGGGCTTGGCGGCGGTCGCAGCGGCCGGCTTGGCTGCCGGCTTC GCGGCGGGCTTGGCTGCGGCAGGTTTCGCAGCAGGCTTCGCCGCAGCCTTGGCTGCCGGCTTGGCCGCCGGT TTCGCGGCGGCCTTCGCAGCCGGTTTGGCGGCGGGCTTGGCTGCCGGCTTGGCGGCCGCGGTCTTCGCTGCA GGTTTTTTCGCCGCGGGTTTCGCCGCAGGCTTGGCGGCGGCCTTGGCTGCCGGTTTAGCTGCCGGCTTGGCC GCTGCGGTTTTCGCCGCGGGCTTGGCAGCCGGTTTCGCCGCAGGCTTGGCCGCtgcCTTCGCCGCCGGgcTT GAcgCtGACGCCGGTGAGTTTCTCGATCTGCCTGGTCAGCGTATCGACCTTGCCGTGCAGCTCCTTCACCTC GTTGCGGCTCGGCACGCCGAGACGCGAGATGGCGCTGTTCAGGCGCTTGTCGAAAGCTTCCTCGAGCTCGCT CCACTTGCCAAGCGCACGATCCCGAACCTCGTCAACCTTGCTCTTCGCAGAGCGGGCGGAAGCCTTCGCCGC ACCGACCTGCGCGTCCACATCGGACTTCGCTTCTTTTTCAGCCTTCTCGCCGTCTTTCACCAAGGTCTCGAA CAGCTTGCTGCCGTCCTTGCTGACCTTCGAGTAGGCCCCCAGACCAGCCAGCCAGATCTGCCGCGAGTATTT CTCGATCTCGCCGATCCAACTGGACTCTTTTTCGCTCTTCTTCTTGCCAGCCATCCTGCTCTCCTTATTGGG TTCTCGCGACACGCTCGAGCACTGCGCTCAGCTCATCCAGCTTAG