ViewGene
Locus Name:
GeneID:
Location:

GeneID:6838
TrivialName: PA14_66590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66590
PAO1 Ortholog Locus:
Sequence Length:1884
Protein Length:627
Start: 5944632
Stop: 5946515
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAF63992.1| (AF214678) unknown in vivo-induced protein 152-1 [Pseudomonas aeruginosa]
Identities = 179/180 (99%), Positives = 180/180 (100%)
Sequence:
ATGCTTCTTGGGCAAGTTGAAAGACCCTCCGGTTGCCTTGCGCGCTGCGCCACGATTGGCCAGCATCGCTTC
GATCAGGGCATCGCGGGCGACCTGGTTGATCGCTCCCGGCCAGCCTTCCGACTGCTCGTGGATGTCCACCAG
CAGGTCGTTGGAAATCAGCTCGATGCCCTGCCCGGCGCCCTCGAGACGCTGGGCCAGGTAGTCGCGGGTTTC
CTCTTCGCTGTATGGCTGCAACTCGATGGCATGGAAGCGCTCCTCACCCTCGGAAAACACCTCCAGGCGCGG
CAGCAACGACGGCTCACCGAACAGGAATACATGCAGGCGTCCCTCGTTGGTGCCGGAAGCCAGCAGCAACAG
CACTTCCAGCGCGCTGTCCTGGAGCTGCTCGGCATCGTCCACCATCAGGTAGACGTCCTGCCCGGTGATCGC
CAGCTGCGCCACCTTGGTCAGGATCGCCTCCAGGCTCGCCTGGTTGATGCTCAGGCCCTGCGCCACCTGGCG
CAGCAACGAAGTCTCGTCGGCGGCGGTGCGCGCCGAGATCACCACGCTGAGGACCGCATCCTTGTTGGTGCT
GGCCACCAGCGCCTGGCGCAGCAGGGTCTTGCCGCTGCCCAGGGGCCCGGTGACCAGCAGCAGGAGCTGGCT
GTAGCGGGCCAGATGGTGCAACTGGCCGAGCACCGGCTTGCGCTGCGCCGGGAAGAACTTGAAACCCGGAAC
GCGCGGCGCGAACGGGTCGTGACTGAATTGGTAGTGGCCCAGGAAGGCCTCATCGGCATGCAAGCTGGTCAT
GGGACCTCATTCATCTCCAAGCTGGTCGGCCAAGGCCCGATAGTCGGTGCGCAGGGTCGCGTCCAAGATCTC
ACGGGGAAAATCGCCGGTGACCACGGCATTCCCCAGTCCTTGCAGCAAAACCAGACGCAGGCGGCCATCGAG
CACTTTCTTGTCGACGGCCATGTGTTCCATAAAATCTTCCGCCGTCATCTCGGCCGGCGGTACCACGGGCAG
GCCAGCCCGGCGCAGCAGACGGATACCGCGATCGCGCTCGGCGGCGCTCAGCCAACCCAACCGATGCGACAT
CTCGAGTGCCATCACGGTTCCCGCCCCTACCGCTTCGCCGTGCAACCAGACGCCGTAACCTTGCTGGGTCTC
GATCGCGTGACCGAAGGTATGGCCGAGGTTCAGCGTGGCACGCACGCCCGACTCGCGCTCGTCGGCGCCCAC
CACGCGGGCCTTCGCCGCGCAAGAGCGCTCGATGGCCTCGGTGACAACGGTCGGCTCCAGTGCCAGCAAGGC
ATCCATGTGCTCTTCCAGCCAGGTGATGAACGGTTCGTCGCAAATGAAACCGTACTTGATCACCTCCGCCAG
CCCGGCGGACAGCTCGCGGGACGGCAGCGTCTTCAGCGACGCGGTGTCGATGACCACCGCCTGGGGCTGGTA
GAACGCACCGATCATGTTCTTGCCCAACGGATGGTTGATCCCGGTCTTGCCGCCCACCGAGGAGTCGACCTG
GGACAACAGGGTGGTCGGCACCTGGATGAAGTTGACCCCACGCTGGTAGCAGGCCGCGGCGAAACCGGCCAT
GTCACCGATGACGCCGCCGCCCAGGGCGATCAGGGTAGTCTTGCGGTCATGCCGCTCCTTCAGCAGGGCATC
GAAGATCAGTTGCAGGGTTTCCCACTGCTTGTAGGCCTCGCCGTCGGGCAGCACCACAGGGGTGACCTCGTG
GCCTTGCAGTGCCTTGAGCAGGGTTTCCAGATAGAGAGGAGCGACCGTTTCGTTGCTGATCACCGCGACCCG
GCGACCGACGATATGCGGCGCGAACCAGCGGGCGTCGCCCAGCAGGTTTTCACCGATGTAAATGGGATAGCT
ACGCTCGCCTAG
Translation:
MLLGQVERPSGCLARCATIGQHRFDQGIAGDLVDRSRPAFRLLVDVHQQVVGNQLDALPGALETLGQVVAGF
LFAVWLQLDGMEALLTLGKHLQARQQRRLTEQEYMQASLVGAGSQQQQHFQRAVLELLGIVHHQVDVLPGDR
QLRHLGQDRLQARLVDAQALRHLAQQRSLVGGGARRDHHAEDRILVGAGHQRLAQQGLAAAQGPGDQQQELA
VAGQMVQLAEHRLALRREELETRNARRERVVTELVVAQEGLIGMQAGHGTSFISKLVGQGPIVGAQGRVQDL
TGKIAGDHGIPQSLQQNQTQAAIEHFLVDGHVFHKIFRRHLGRRYHGQASPAQQTDTAIALGGAQPTQPMRH
LECHHGSRPYRFAVQPDAVTLLGLDRVTEGMAEVQRGTHARLALVGAHHAGLRRARALDGLGDNGRLQCQQG
IHVLFQPGDERFVANETVLDHLRQPGGQLAGRQRLQRRGVDDHRLGLVERTDHVLAQRMVDPGLAAHRGVDL
GQQGGRHLDEVDPTLVAGRGETGHVTDDAAAQGDQGSLAVMPLLQQGIEDQLQGFPLLVGLAVGQHHRGDLV
ALQCLEQGFQIERSDRFVADHRDPATDDMRREPAGVAQQVFTDVNGIATLA*
AnnotationID:6839GeneID:6838
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 16:04:56
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:13390




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30759




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6838
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
202647
                           gb|AAF63992.1|
                           (AF214678) unknown in vivo-induced protein 152-1 [Pseudomonas aeruginosa]
                           632
                           29.74
                           29.90
                           425
                           916.0
     

     






      

          
GC ORFID: 49840How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5208315Stop: 5210198

          
Length: 1884


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: psyr_15may02_Scaffold2_revised_gene3779 related to: gi|7576791|gb|AAF63992.1| (AF214678) unknown in vivo-induced protein 152-1 [Pseudomonas aeruginosa]Homolog Bit Score 204.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3779 related to: gi|7576791|gb|AAF63992.1| (AF214678) unknown in vivo-induced protein 152-1 [Pseudomonas aeruginosa] (BLASTP 204)

          
GC ORF Sequence

           
ATGCTTCTTGGGCAAGTTGAAAGACCCTCCGGTTGCCTTGCGCGCTGCGCCACGATTGGCCAGCATCGCTTC 
GATCAGGGCATCGCGGGCGACCTGGTTGATCGCTCCCGGCCAGCCTTCCGACTGCTCGTGGATGTCCACCAG 
CAGGTCGTTGGAAATCAGCTCGATGCCCTGCCCGGCGCCCTCGAGACGCTGGGCCAGGTAGTCGCGGGTTTC 
CTCTTCGCTGTATGGCTGCAACTCGATGGCATGGAAGCGCTCCTCACCCTCGGAAAACACCTCCAGGCGCGG 
CAGCAACGACGGCTCACCGAACAGGAATACATGCAGGCGTCCCTCGTTGGTGCCGGAAGCCAGCAGCAACAG 
CACTTCCAGCGCGCTGTCCTGGAGCTGCTCGGCATCGTCCACCATCAGGTAGACGTCCTGCCCGGTGATCGC 
CAGCTGCGCCACCTTGGTCAGGATCGCCTCCAGGCTCGCCTGGTTGATGCTCAGGCCCTGCGCCACCTGGCG 
CAGCAACGAAGTCTCGTCGGCGGCGGTGCGCGCCGAGATCACCACGCTGAGGACCGCATCCTTGTTGGTGCT 
GGCCACCAGCGCCTGGCGCAGCAGGGTCTTGCCGCTGCCCAGGGGCCCGGTGACCAGCAGCAGGAGCTGGCT 
GTAGCGGGCCAGATGGTGCAACTGGCCGAGCACCGGCTTGCGCTGCGCCGGGAAGAACTTGAAACCCGGAAC 
GCGCGGCGCGAACGGGTCGTGACTGAATTGGTAGTGGCCCAGGAAGGCCTCATCGGCATGCAAGCTGGTCAT 
GGGACCTCATTCATCTCCAAGCTGGTCGGCCAAGGCCCGATAGTCGGTGCGCAGGGTCGCGTCCAAGATCTC 
ACGGGGAAAATCGCCGGTGACCACGGCATTCCCCAGTCCTTGCAGCAAAACCAGACGCAGGCGGCCATCGAG 
CACTTTCTTGTCGACGGCCATGTGTTCCATAAAATCTTCCGCCGTCATCTCGGCCGGCGGTACCACGGGCAG 
GCCAGCCCGGCGCAGCAGACGGATACCGCGATCGCGCTCGGCGGCGCTCAGCCAACCCAACCGATGCGACAT 
CTCGAGTGCCATCACGGTTCCCGCCCCTACCGCTTCGCCGTGCAACCAGACGCCGTAACCTTGCTGGGTCTC 
GATCGCGTGACCGAAGGTATGGCCGAGGTTCAGCGTGGCACGCACGCCCGACTCGCGCTCGTCGGCGCCCAC 
CACGCGGGCCTTCGCCGCGCAAGAGCGCTCGATGGCCTCGGTGACAACGGTCGGCTCCAGTGCCAGCAAGGC 
ATCCATGTGCTCTTCCAGCCAGGTGATGAACGGTTCGTCGCAAATGAAACCGTACTTGATCACCTCCGCCAG 
CCCGGCGGACAGCTCGCGGGACGGCAGCGTCTTCAGCGACGCGGTGTCGATGACCACCGCCTGGGGCTGGTA 
GAACGCACCGATCATGTTCTTGCCCAACGGATGGTTGATCCCGGTCTTGCCGCCCACCGAGGAGTCGACCTG 
GGACAACAGGGTGGTCGGCACCTGGATGAAGTTGACCCCACGCTGGTAGCAGGCCGCGGCGAAACCGGCCAT 
GTCACCGATGACGCCGCCGCCCAGGGCGATCAGGGTAGTCTTGCGGTCATGCCGCTCCTTCAGCAGGGCATC 
GAAGATCAGTTGCAGGGTTTCCCACTGCTTGTAGGCCTCGCCGTCGGGCAGCACCACAGGGGTGACCTCGTG 
GCCTTGCAGTGCCTTGAGCAGGGTTTCCAGATAGAGAGGAGCGACCGTTTCGTTGCTGATCACCGCGACCCG 
GCGACCGACGATATGCGGCGCGAACCAGCGGGCGTCGCCCAGCAGGTTTTCACCGATGTAAATGGGATAGCT 
ACGCTCGCCTAG