ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6837

TrivialName: PA14_66500

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_66500

PAO1 Ortholog Locus:

Sequence Length: 1815

Protein Length: 604

Start: 5931665

Stop: 5933479

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 169/631 (26%), Positives = 204/631 (32%), Gaps = 163/631 (25%)

Sequence:

TtgcCACATAACCTCCAACAACGACCCCTTGTCCCTGAAATCCAGGTGGCGCGGCCTCGTTGTGCCTGCTCG
CCACCGTCCCCAGAGGTGCCCCGTGAGCAATCCGCAAGTCCGGCCACAGGCCGAAGAAGAACCCGCGTTAAT
CGAGGCGGCCCGCGAAGCAGCCAACGAGGTGCTGGAAGCCGCCACCGAAGTCGAACGCTATATCGAAAAAGG
CACCCCGCAGTTCATGCGCACCTCCCTGGCGCTGTTCTCCGGCGGTTTCGCCACCTTTGCCCTGCTCTACTG
CATCCAGCCGATGATGCCGGTGCTGTCCAAGGCGTTTTCCATCAGCGCCGCGGAAAGCAGCCTGGCATTGTC
CGTCGCCACCGCCATGCTCGCCCTTGGCCTGCTGGTCACCGGCCCGATCTCCGACGCGATCGGCCGCAAGCC
GGTGATGGTCGTCTCGCTGCTGGCCGCCGCGCTGTTCACCCTCGGCAGCGCGGTGATGCCCACCTGGCATGG
CGTGCTGCTGATGCGCGCGCTGGTCGGGCTGTCCTTGAGCGGCCTGGCCGCGGTGGCGATGACCTATCTCAG
CGAAGAGATCCATCCGCAGCACATCGGCTTGTCGATGGGCCTGTACATCGGCGGCAACGCCATCGGCGGGAT
GAGCGGACGCCTGATCAGCGGCGTCCTGGTCGATTTCATCTCCTGGCATGCCGCACTGGCGGTCCTCGGCGG
CCTGGCCCTGGTCGCCGCGCTGGTGTTCTGGCGCGTGCTGCCCGAATCGAAACACTTCCGGCCGGCACCGCT
GAAGCCGGCGACCCTGCTCAACGGCTACCGCTTGCACTTCCGCGACGCCGGACTGCCCTGGCTGTTCCTGAT
CGGCTTCCTGCTGATGGGCAGCTTCGTCACCCTGTTCAACTACATCGGCTACCGCCTGCTGGCCGAGCCCTA
CCACATGAGCCAGGCGGTGGTCGGCGTGCTCTCGGTGGTTTACCTCTCGGGCATCTACAGCTCGGCCTGGGT
CGGTTCGCTGGCCGACAAGCTGGGGCGACGCAAGGTGCTCTGGGCGGTCATCCTGCTGATGCTCGGCGGCCT
GCTGCTGACCCTGTTCGAGCCGATCCCGCTGATGCTCGCCGGCCTGCTGCTGTTCACCTTCGGCTTCTTCGG
CGCGCACTCGGTGGCGAGCAGTTGGATCGGGCGCCGCGCCCTGCGCGCCAAGGGCCAGGCCTCGTCGCTCTA
TCTGTTCAGCTACTACGTCGGCTCGAGCCTGGCCGGCACCCTCGGCGGGGTGTTCTGGCATTACTACGGCTG
GAACGGCATCGGGCTGTTCATCGGCTCGCTGCTGGTGGTCGCGGTATTGGTCTCGCTGCACCTGGCGCGCCT
GCCGGCCCTGCCTGGCAACACCCTGGCGCAGCCCGCCCACTGAGTTCGAGGCGCCGGTCTCCCGGCGCCTTC
ACTCCGACCAGAAGCGTACTCCGGTCAGTTCTTCCGATAGCGCCCACAGCCGCGCGGCCAGCCCCAGGTCGC
GCGCATTCCGCGGAATCCGCGCCGCCGCCGGATAACCGCGGGTTTCCAGCCAGCGATCCGGGCCGACATAGG
CGCCGCCATACCAGCGCTGTTCGGTCAGCGCGGAAAGTGCCGGCAACGCCCCCATCTCCGCCGATTGCGCGA
ACGCTCCGTTGGCCACCTTCATCGCCCAGCGTCCCAGGCGCGAACCGGACATCGCCGGTGCCGCGTACTGCA
GGTTGGTCGCCGCGTAGCCCGGATGCGCCGCCAGGCTCTGCAGAAGCACGCCCCGCTGGCCGGCGCGGCGCT
GCAACTCCAGGCTGA

Translation:

MPHNLQQRPLVPEIQVARPRCACSPPSPEVPREQSASPATGRRRTRVNRGGPRSSQRGAGSRHRSRTLYRKR
HPAVHAHLPGAVLRRFRHLCPALLHPADDAGAVQGVFHQRRGKQPGIVRRHRHARPWPAGHRPDLRRDRPQA
GDGRLAAGRRAVHPRQRGDAHLAWRAADARAGRAVLERPGRGGDDLSQRRDPSAAHRLVDGPVHRRQRHRRD
ERTPDQRRPGRFHLLACRTGGPRRPGPGRRAGVLARAARIETLPAGTAEAGDPAQRLPLALPRRRTALAVPD
RLPADGQLRHPVQLHRLPPAGRALPHEPGGGRRALGGLPLGHLQLGLGRFAGRQAGATQGALGGHPADARRP
AADPVRADPADARRPAAVHLRLLRRALGGEQLDRAPRPARQGPGLVALSVQLLRRLEPGRHPRRGVLALLRL
ERHRAVHRLAAGGRGIGLAAPGAPAGPAWQHPGAARPLSSRRRSPGAFTPTRSVLRSVLPIAPTAARPAPGR
AHSAESAPPPDNRGFPASDPGRHRRRHTSAVRSARKVPATPPSPPIARTLRWPPSSPSVPGANRTSPVPRTA
GWSPRSPDAPPGSAEARPAGRRGAATPG*

AnnotationID:6838 GeneID:6837

AnnotatorUID: diggins

Modification Date/Time: 2004-10-23 19:07:10

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16594

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30757

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:34943

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6837_cdd.html

URL:

GC ORFID: `49839`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `5195348`	Stop: `5197162`
Length: `1815`
Start Codon: `TTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
TtgcCACATAACCTCCAACAACGACCCCTTGTCCCTGAAATCCAGGTGGCGCGGCCTCGTTGTGCCTGCTCG CCACCGTCCCCAGAGGTGCCCCGTGAGCAATCCGCAAGTCCGGCCACAGGCCGAAGAAGAACCCGCGTTAAT CGAGGCGGCCCGCGAAGCAGCCAACGAGGTGCTGGAAGCCGCCACCGAAGTCGAACGCTATATCGAAAAAGG CACCCCGCAGTTCATGCGCACCTCCCTGGCGCTGTTCTCCGGCGGTTTCGCCACCTTTGCCCTGCTCTACTG CATCCAGCCGATGATGCCGGTGCTGTCCAAGGCGTTTTCCATCAGCGCCGCGGAAAGCAGCCTGGCATTGTC CGTCGCCACCGCCATGCTCGCCCTTGGCCTGCTGGTCACCGGCCCGATCTCCGACGCGATCGGCCGCAAGCC GGTGATGGTCGTCTCGCTGCTGGCCGCCGCGCTGTTCACCCTCGGCAGCGCGGTGATGCCCACCTGGCATGG CGTGCTGCTGATGCGCGCGCTGGTCGGGCTGTCCTTGAGCGGCCTGGCCGCGGTGGCGATGACCTATCTCAG CGAAGAGATCCATCCGCAGCACATCGGCTTGTCGATGGGCCTGTACATCGGCGGCAACGCCATCGGCGGGAT GAGCGGACGCCTGATCAGCGGCGTCCTGGTCGATTTCATCTCCTGGCATGCCGCACTGGCGGTCCTCGGCGG CCTGGCCCTGGTCGCCGCGCTGGTGTTCTGGCGCGTGCTGCCCGAATCGAAACACTTCCGGCCGGCACCGCT GAAGCCGGCGACCCTGCTCAACGGCTACCGCTTGCACTTCCGCGACGCCGGACTGCCCTGGCTGTTCCTGAT CGGCTTCCTGCTGATGGGCAGCTTCGTCACCCTGTTCAACTACATCGGCTACCGCCTGCTGGCCGAGCCCTA CCACATGAGCCAGGCGGTGGTCGGCGTGCTCTCGGTGGTTTACCTCTCGGGCATCTACAGCTCGGCCTGGGT CGGTTCGCTGGCCGACAAGCTGGGGCGACGCAAGGTGCTCTGGGCGGTCATCCTGCTGATGCTCGGCGGCCT GCTGCTGACCCTGTTCGAGCCGATCCCGCTGATGCTCGCCGGCCTGCTGCTGTTCACCTTCGGCTTCTTCGG CGCGCACTCGGTGGCGAGCAGTTGGATCGGGCGCCGCGCCCTGCGCGCCAAGGGCCAGGCCTCGTCGCTCTA TCTGTTCAGCTACTACGTCGGCTCGAGCCTGGCCGGCACCCTCGGCGGGGTGTTCTGGCATTACTACGGCTG GAACGGCATCGGGCTGTTCATCGGCTCGCTGCTGGTGGTCGCGGTATTGGTCTCGCTGCACCTGGCGCGCCT GCCGGCCCTGCCTGGCAACACCCTGGCGCAGCCCGCCCACTGAGTTCGAGGCGCCGGTCTCCCGGCGCCTTC ACTCCGACCAGAAGCGTACTCCGGTCAGTTCTTCCGATAGCGCCCACAGCCGCGCGGCCAGCCCCAGGTCGC GCGCATTCCGCGGAATCCGCGCCGCCGCCGGATAACCGCGGGTTTCCAGCCAGCGATCCGGGCCGACATAGG CGCCGCCATACCAGCGCTGTTCGGTCAGCGCGGAAAGTGCCGGCAACGCCCCCATCTCCGCCGATTGCGCGA ACGCTCCGTTGGCCACCTTCATCGCCCAGCGTCCCAGGCGCGAACCGGACATCGCCGGTGCCGCGTACTGCA GGTTGGTCGCCGCGTAGCCCGGATGCGCCGCCAGGCTCTGCAGAAGCACGCCCCGCTGGCCGGCGCGGCGCT GCAACTCCAGGCTGA