ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6827

TrivialName: PA14_65980

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_65980

PAO1 Ortholog Locus:

Sequence Length: 1536

Protein Length: 511

Start: 5879002

Stop: 5877467

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAD97378.1| (BX248342) PE-PGRS FAMILY PROTEIN [SECOND PART] [Mycobacterium bovis subsp. bovis AF2122/97] Identities = 65/206 (31%), Positives = 76/206 (36%), Gaps = 20/206 (9%)

Sequence:

ATGTTCGCTGGGGCGGATGCCGTCTTCTTCCAGGCGGGCGCAGACCCGGTCGGCGAAGTCAGGGGCCAGCGC
CAGCTTGGTCGGCCAGCCGACCAGCAGGCGTCCCTGTTCGGCGAGGAAGGCGTTGTCCGGGCGCAACAGGTT
GGACTGTGCCGGCTCGGCGCGATCCACCCGCAAGGTGGCCCACTGCGCCTGGCCGAGGTCGATCCAGGGCAG
CAGCTTTGCCAGTTCGCGGCGTGCTTCGGCGATCTGCGCGGCTTCGTCGCGGGCCACGCCATCGGCTTCGGC
GATGTCGCCGCCGAGGTACCAGACCGACTGGCCGTCGCGGGTCGGATGGGTGGTCACGGTGATCCGTGGCTT
CGGCCCGGCCCCCAGGCAGTGGGCGTACAGCGGTTTCAGGGTCGCCGCCTTGACCATCACCATGTGCAGCGG
CCGCCGCTGCATGGCCGGTTGTTCCAGGCCCAGTTCGCGGAGCAGCGCCTCGTTGCCGGCACCGGCGCTGAG
CACCACGCGCTGTGCACGGATCTCCCGGCCGTCGACGCACAGGCCGGCCAGTTCCCGGCCTTCGCGCAGCGG
TTCGATGCGCTCGCCGGCGAGCAGGCTGTCGCCGGCCAGTTCCGCCAGGCGGCGAATCAGGTCGGGGACGTC
GAAGACGATTTCCGTGAGGCGGTAGGCCTTGCCCTTGAACCCCTTGTCGCGCAGCGCCGGAGGCAAATCCCC
GCCCTTGGCCTGCTCGACCCGGCTGCGCACCGCCTTGCTGGCGAAGAAGCTGGTAAGGCTGCCGGCCAGGCC
GCCCGGCGACCACAGGTAGTGCGCCTCGGAAAGCAGGCGTACGCCCCGCAGGTCGAGTTCGCCGTCGCTGCC
GAGACAGGCGCGCCAGCGCCGCGGCATGTCGGCGATGGCTTCGGAGGCGCCGGTCAGGGCGCCATGCAGGGC
GTACTTGGCGCCGCCGTGGATGATCCCCTGCGACTTCACGCTCTGTCCGCCGCCGAGGCTGGCGCTTTCCAC
CAGCACGGTGGCGTAGCCGGCCCGGCGCAAGCGGGCGTTCAGCCAGAGGCCGGCGATACCGCCGCCAACGAT
GAGGATGTCGGTGGAAAGGGCTTGGGGCATGGGGCTGCCTTATCGGGAACGGAAAGGGCGCAGTATACAACC
TGCGCCCGCGACGGTCGTTCAGTGCCCCGAAGCGCGGGAGAACAACTGGATCACCAGCACGCCGGCGATGAT
CAGGCCGATACCGAGGAGGGCCGCGGGGTCCAGGCGCTGGCCGTAGACGAACATCGCCACCAGGCTGACCAG
GACGATGCCGAGCCCGGACCAGATGGCGTAGACCACGCCGACCGGCAGGGTGCGCATGACCAGCACGAGCAT
GCTGAAGGCGAGCACGTAGCCGCCCACCACCAGCAGCAGCGGCAGTGGCTTGCTGAATCCGGCGACGGCTTT
CAGCGAGGTGGTGGCGACCACTTCGGCGGCGATGGCGATGGCGAGGTAGAGATAATTGGTCATGGCGGCGTC
CTCCGGAAACTGCGGCCATTCTAG

Translation:

MFAGADAVFFQAGADPVGEVRGQRQLGRPADQQASLFGEEGVVRAQQVGLCRLGAIHPQGGPLRLAEVDPGQ
QLCQFAACFGDLRGFVAGHAIGFGDVAAEVPDRLAVAGRMGGHGDPWLRPGPQAVGVQRFQGRRLDHHHVQR
PPLHGRLFQAQFAEQRLVAGTGAEHHALCTDLPAVDAQAGQFPAFAQRFDALAGEQAVAGQFRQAANQVGDV
EDDFREAVGLALEPLVAQRRRQIPALGLLDPAAHRLAGEEAGKAAGQAARRPQVVRLGKQAYAPQVEFAVAA
ETGAPAPRHVGDGFGGAGQGAMQGVLGAAVDDPLRLHALSAAEAGAFHQHGGVAGPAQAGVQPEAGDTAAND
EDVGGKGLGHGAALSGTERAQYTTCARDGRSVPRSAGEQLDHQHAGDDQADTEEGRGVQALAVDEHRHQADQ
DDAEPGPDGVDHADRQGAHDQHEHAEGEHVAAHHQQQRQWLAESGDGFQRGGGDHFGGDGDGEVEIIGHGGV
LRKLRPF*

AnnotationID:6828 GeneID:6827

AnnotatorUID: diggins

Modification Date/Time: 2004-10-26 12:12:25

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:13372

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30737

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:35021

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6827_cdd.html

URL:

GC ORFID: `49829`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `5142685`	Stop: `5141150`
Length: `1536`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGTTCGCTGGGGCGGATGCCGTCTTCTTCCAGGCGGGCGCAGACCCGGTCGGCGAAGTCAGGGGCCAGCGC CAGCTTGGTCGGCCAGCCGACCAGCAGGCGTCCCTGTTCGGCGAGGAAGGCGTTGTCCGGGCGCAACAGGTT GGACTGTGCCGGCTCGGCGCGATCCACCCGCAAGGTGGCCCACTGCGCCTGGCCGAGGTCGATCCAGGGCAG CAGCTTTGCCAGTTCGCGGCGTGCTTCGGCGATCTGCGCGGCTTCGTCGCGGGCCACGCCATCGGCTTCGGC GATGTCGCCGCCGAGGTACCAGACCGACTGGCCGTCGCGGGTCGGATGGGTGGTCACGGTGATCCGTGGCTT CGGCCCGGCCCCCAGGCAGTGGGCGTACAGCGGTTTCAGGGTCGCCGCCTTGACCATCACCATGTGCAGCGG CCGCCGCTGCATGGCCGGTTGTTCCAGGCCCAGTTCGCGGAGCAGCGCCTCGTTGCCGGCACCGGCGCTGAG CACCACGCGCTGTGCACGGATCTCCCGGCCGTCGACGCACAGGCCGGCCAGTTCCCGGCCTTCGCGCAGCGG TTCGATGCGCTCGCCGGCGAGCAGGCTGTCGCCGGCCAGTTCCGCCAGGCGGCGAATCAGGTCGGGGACGTC GAAGACGATTTCCGTGAGGCGGTAGGCCTTGCCCTTGAACCCCTTGTCGCGCAGCGCCGGAGGCAAATCCCC GCCCTTGGCCTGCTCGACCCGGCTGCGCACCGCCTTGCTGGCGAAGAAGCTGGTAAGGCTGCCGGCCAGGCC GCCCGGCGACCACAGGTAGTGCGCCTCGGAAAGCAGGCGTACGCCCCGCAGGTCGAGTTCGCCGTCGCTGCC GAGACAGGCGCGCCAGCGCCGCGGCATGTCGGCGATGGCTTCGGAGGCGCCGGTCAGGGCGCCATGCAGGGC GTACTTGGCGCCGCCGTGGATGATCCCCTGCGACTTCACGCTCTGTCCGCCGCCGAGGCTGGCGCTTTCCAC CAGCACGGTGGCGTAGCCGGCCCGGCGCAAGCGGGCGTTCAGCCAGAGGCCGGCGATACCGCCGCCAACGAT GAGGATGTCGGTGGAAAGGGCTTGGGGCATGGGGCTGCCTTATCGGGAACGGAAAGGGCGCAGTATACAACC TGCGCCCGCGACGGTCGTTCAGTGCCCCGAAGCGCGGGAGAACAACTGGATCACCAGCACGCCGGCGATGAT CAGGCCGATACCGAGGAGGGCCGCGGGGTCCAGGCGCTGGCCGTAGACGAACATCGCCACCAGGCTGACCAG GACGATGCCGAGCCCGGACCAGATGGCGTAGACCACGCCGACCGGCAGGGTGCGCATGACCAGCACGAGCAT GCTGAAGGCGAGCACGTAGCCGCCCACCACCAGCAGCAGCGGCAGTGGCTTGCTGAATCCGGCGACGGCTTT CAGCGAGGTGGTGGCGACCACTTCGGCGGCGATGGCGATGGCGAGGTAGAGATAATTGGTCATGGCGGCGTC CTCCGGAAACTGCGGCCATTCTAG