ViewGene
Locus Name:
GeneID:
Location:

GeneID:6819
TrivialName: PA14_65800
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65800
PAO1 Ortholog Locus:
Sequence Length:774
Protein Length:257
Start: 5859743
Stop: 5858970
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
GeneID6819 (PA14_65800) and GeneID6820 (PA14_65790) replaced by GeneID7422 (PA14_65795). Homology: gb|AAG08362.1|AE004910_9 (AE004910) probable acetolactate synthase large subunit [Pseudomonas aeruginosa PAO1]
Identities = 254/257 (98%), Positives = 255/257 (99%)
Sequence:
ATGGCCGACACCGACTTCTGGCGCGAACGCCTGCCGCTGTCCGGCGAACTGATCCGCGTCGATATCGACCCG
CGCAAGTTCAACGACTTCTATCCCTCTGCCGTAGCGCTCAGGGGCGATGCCCGGCAGACCCTGGAAGCGCTG
CTGGCGCGCCTGCCGCAGGAGGCCCGCGACGCCGCGCCGGCCGCCGCGAGGGTGGCGCGCCTGCGCGCGGAG
ATCCGCGCGGCACACGCGCCGCTGCAGGCGCTGCACCAGGCGATCCTCGACCGGATCGCCGCTGCGCTGCCG
GCCGATGCGTTCGTCAGCACCGACATGACCCAACTGGCCTATACCGGCAACTACGCGTTCGCCAGCCGAGCA
CCGCGCAGCTGGCTGCATCCCACCGGCTACGGCACCCTCGGCTACGGCCTGCCGGCCGGCATCGGCGCCAAG
CTCGGCGCCCCGCAGCGCCCGGGCCTGGTGCTGGTCGGCGATGGCGGCTTCCTCTACACCGCGCAGGAACTG
GCCACCGCCAGCGAGGAACTGGACAGTCCGCTGGTGGTGCTACTGTGGAACAACGACGCGCTCGGCCAGATC
CGCGACGACATGCTCGGCCTGGACATCGAGCCGGTCGGCGTGCTGCCGCGCAACCCCGACTTCGCCCTGCTG
GGCCGCGCCTACGGTTGCGCGGTGCGCCAGCCGCAGGACCTGGACGAACTGGAGCGCGACCTGCGCGCCGGC
TTCGGGCAGCCCGGCGTGACCCTGATCGAACTGCGGCACGCCTGCGCGCGCTGA
Translation:
MADTDFWRERLPLSGELIRVDIDPRKFNDFYPSAVALRGDARQTLEALLARLPQEARDAAPAAARVARLRAE
IRAAHAPLQALHQAILDRIAAALPADAFVSTDMTQLAYTGNYAFASRAPRSWLHPTGYGTLGYGLPAGIGAK
LGAPQRPGLVLVGDGGFLYTAQELATASEELDSPLVVLLWNNDALGQIRDDMLGLDIEPVGVLPRNPDFALL
GRAYGCAVRQPQDLDELERDLRAGFGQPGVTLIELRHACAR*
AnnotationID:6820GeneID:6819
AnnotatorUID: danlee
Modification Date/Time: 2006-03-13 11:11:31
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):coenzyme metabolism
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:
GeneID6819 (PA14_65800) and GeneID6820 (PA14_65790) replaced by GeneID7422 (PA14_65795).


















    ReferenceID:13356




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30721




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35116




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6819_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6819
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
8034
                           PA4977_tr
                           translation of PA4977
                           559
                           45.43
                           45.61
                           302
                           1307.0
     

     
     
202619
                           gb|AAG08362.1|AE004910_9
                           (AE004910) probable acetolactate synthase large subunit [Pseudomonas aeruginosa PAO1]
                           559
                           45.43
                           45.61
                           302
                           1307.0
     

     
     
8035
                           PA1417_tr
                           translation of PA1417
                           540
                           20.37
                           27.03
                           290
                           426.0
     

     
     
202620
                           gb|AAG04806.1|AE004571_5
                           (AE004571) probable decarboxylase [Pseudomonas aeruginosa PAO1]
                           540
                           20.37
                           27.03
                           290
                           426.0
     

     






      

          
GC ORFID: 49821How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5123425Stop: 5122652

          
Length: 774


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4977 translation of PA4977Homolog Bit Score 508.0

          
Other Homologs:  t_PA4977 translation of PA4977 (BLASTP 508), t_PA1417 translation of PA1417 (BLASTP 164)

          
GC ORF Sequence

           
ATGGCCGACACCGACTTCTGGCGCGAACGCCTGCCGCTGTCCGGCGAACTGATCCGCGTCGATATCGACCCG 
CGCAAGTTCAACGACTTCTATCCCTCTGCCGTAGCGCTCAGGGGCGATGCCCGGCAGACCCTGGAAGCGCTG 
CTGGCGCGCCTGCCGCAGGAGGCCCGCGACGCCGCGCCGGCCGCCGCGAGGGTGGCGCGCCTGCGCGCGGAG 
ATCCGCGCGGCACACGCGCCGCTGCAGGCGCTGCACCAGGCGATCCTCGACCGGATCGCCGCTGCGCTGCCG 
GCCGATGCGTTCGTCAGCACCGACATGACCCAACTGGCCTATACCGGCAACTACGCGTTCGCCAGCCGAGCA 
CCGCGCAGCTGGCTGCATCCCACCGGCTACGGCACCCTCGGCTACGGCCTGCCGGCCGGCATCGGCGCCAAG 
CTCGGCGCCCCGCAGCGCCCGGGCCTGGTGCTGGTCGGCGATGGCGGCTTCCTCTACACCGCGCAGGAACTG 
GCCACCGCCAGCGAGGAACTGGACAGTCCGCTGGTGGTGCTACTGTGGAACAACGACGCGCTCGGCCAGATC 
CGCGACGACATGCTCGGCCTGGACATCGAGCCGGTCGGCGTGCTGCCGCGCAACCCCGACTTCGCCCTGCTG 
GGCCGCGCCTACGGTTGCGCGGTGCGCCAGCCGCAGGACCTGGACGAACTGGAGCGCGACCTGCGCGCCGGC 
TTCGGGCAGCCCGGCGTGACCCTGATCGAACTGCGGCACGCCTGCGCGCGCTGA