ViewGene
Locus Name:
GeneID:
Location:

GeneID:6815
TrivialName: PA14_65650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65650
PAO1 Ortholog Locus:
Sequence Length:2022
Protein Length:673
Start: 5847346
Stop: 5849367
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAB09604.1| (M38373) ORF4 [Haloferax alicantei] [Haloferax lucentensis]
Identities = 209/667 (31%), Positives = 304/667 (45%), Gaps = 54/667 (8%)
Sequence:
GTGGCTCTGGCGGCGCCTCGGCCGCCTGGACCAGGCCCCCGAACAGGCCGAGGATGGCCAGCAGGCGGCGCA
TCAGACCAGCACCTCGGCCAGGTTGCCCTTGCTCTCCAGCCAGGACTTGCGGTCACCGGCGCGCTTCTTGGC
CAGCAGCATGTCCATGATCTCCAGGGTACCGGTGGCGTCCTCCAGGGTGAGCTGGACCAGCCGCCGGGTATT
CGGATCCATGGTGGTCTCGCGCAGTTGCAACGGATTCATTTCGCCAAGGCCCTTGAAGCGGGTGACCTGCGG
CTTGCCGCGCTTCTTCTCGGCGGCCAGGCGCTCGAGGATGCCGTCGCGCTCGGCTTCGTCGAGGGCGTAGTA
GATTTCCTTGCCGAGGTCGATGCGGTACAGCGGCGGCATCGCCACGTAGACGTGGCCGGCTTCCACCAGCGG
GCGGAAATGGCGGACGAACAGCGCGCAGAGCAGCGTGGCGATGTGCAGCCCGTCGGAGTCGGCATCCGCGAG
GATACAGATCTTGCCGTAGCGCAGCTGAGCCAGGTCGCTGGCGCCCGGATCGACGCCGATGGCTACCGCGAT
GTCGTGGACCTCCTGGCTGGCAAGCACCTCGCCGCCGTCCACTTCCCAGGTGTTCAGGATCTTTCCGCGCAG
CGGCATGATCGCCTGGAATTCCTTGTCCCGCGCCTGCTTCGCCGAGCCGCCGGCGGAGTCGCCCTCGACCAG
GAACAGTTCCGCGCGCATCGGTTCCTGTCCGGCGCAGTCGGCCAGTTTGCCGGGCAGCGCCGGCCCCTGGGT
GATCTTCTTGCGCTCGACCTTCTTGCCCGCCTTGAGGCGACGCCCGGCGTTGCTGATCGCCAGTTCCGCCAG
TTGCAGGCCGATTTCGGCGTGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTCACCACGCCCGAGACGAACGC
CGCCGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAACTGCGGTTCCTGCATCTTCATCGAGAG
GACGAAGGCGATCCGTTCCCAGACGTCCTCGGGCGCCAGCTTGACTCCGCGCGGCAACAGGTTGCGGAACTC
GCAGAATTCGCGCATGGCGTCGAGCAGGCCCTGGCGCAGGCCGTTCACATGGGTGCCGCCCTGGGCCGTGGG
AATCAGGTTGACGTAGCTTTCCTGCACCGACTCACCGCCCTCGGGCAGCCACAGCAGGGCCCAGCTCACCGC
TTCCTTGGAACCTTCGAGGTTGCCGCAGAAGGGTTCATCGGGCAGGCGCGGCAGCTCGGCGACCGCGTCGGT
CAGGTAGGAGCGCAGGCCGTCCTCGAAGTGCCACTCGACGCGCTCGCCGGTGTTCTTGTCCTCGAACACCAC
GCTCAGGCCCGGGCACAGCACCGCCTTGGCCTTGAGCACATGCTTGAGGCGGCTGACCGAGAACTTCGCCGA
ATCGAAATACTTCGGATCCGGCCAGAAATGCACGCTGGTACCGGTATTGCGCTTGCCGACCGTGCCGATGAC
TTCCAGATCGCTGTCCTTGAAGCCGTCGGCGAAGGTCATCCGGTACTCGTTGGCGTCGCGCTTGACGCGTAC
CTCGACCCGGGTCGAGAGCGCGTTCACCACCGAGATGCCGACCCCGTGCAAGCCGCCGGAGAACTGGTAGTT
CTTGTTCGAGAACTTGCCGCCGGCATGCAGCTTGGTAAGGATCAGCTCGACGCCCGGCACGCCCTCTTCCGG
GTGGATGTCCACCGGCATGCCGCGGCCGTCGTCGATGACTTCCAGCGAGTTGTCCTGGTGCAGGATCACCTG
CACGCTCTTCGCGTGGCCGGCCAGGGCTTCGTCGACGCTGTTGTCGATGACTTCCTGGGCCAGGTGGTTGGG
GCGGGTGGTGTCGGTGTACATCCCCGGGCGCTTGCGCACCGGGTCGAGGCCGGAAAGGACTTCGATGGCGTC
TGCGTTGTAAGTAGCCATGGGGTCTCTATTCAGTCAAAAGTCGAAAAATCGGTGTCGCGCCACAGCGCCGAC
GGGTAG
Translation:
MALAAPRPPGPGPRTGRGWPAGGASDQHLGQVALALQPGLAVTGALLGQQHVHDLQGTGGVLQGELDQPPGI
RIHGGLAQLQRIHFAKALEAGDLRLAALLLGGQALEDAVALGFVEGVVDFLAEVDAVQRRHRHVDVAGFHQR
AEMADEQRAEQRGDVQPVGVGIREDTDLAVAQLSQVAGARIDADGYRDVVDLLAGKHLAAVHFPGVQDLSAQ
RHDRLEFLVPRLLRRAAGGVALDQEQFRAHRFLSGAVGQFAGQRRPLGDLLALDLLARLEATPGVADRQFRQ
LQADFGVLVEPQAEGVLHHARDERRRLAGRQALLGLPGELRFLHLHREDEGDPFPDVLGRQLDSARQQVAEL
AEFAHGVEQALAQAVHMGAALGRGNQVDVAFLHRLTALGQPQQGPAHRFLGTFEVAAEGFIGQARQLGDRVG
QVGAQAVLEVPLDALAGVLVLEHHAQARAQHRLGLEHMLEAADRELRRIEILRIRPEMHAGTGIALADRADD
FQIAVLEAVGEGHPVLVGVALDAYLDPGRERVHHRDADPVQAAGELVVLVRELAAGMQLGKDQLDARHALFR
VDVHRHAAAVVDDFQRVVLVQDHLHALRVAGQGFVDAVVDDFLGQVVGAGGVGVHPRALAHRVEAGKDFDGV
CVVSSHGVSIQSKVEKSVSRHSADG*
AnnotationID:6816GeneID:6815
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 17:05:15
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:16571




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30713




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49817How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5111028Stop: 5113049

          
Length: 2022


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: psyr_15may02_Scaffold2_revised_gene3671 related to: gi|15805930|ref|NP_294629.1| (NC_001263) conserved hypothetical protein [Deinococcus radiodurans] pir||H75460 conserved hypothetical protein - Deinococcus radiodurans (strain R1) gb|AAF10482.1|AE001943_2Homolog Bit Score 580.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3671 related to: gi|15805930|ref|NP_294629.1| (NC_001263) conserved hypothetical protein [Deinococcus radiodurans] pir||H75460 conserved hypothetical protein - Deinococcus radiodurans (strain R1) gb|AAF10482.1|AE001943_2 (AE001943) conserved hypothetical protein -TRUNCATED- (BLASTP 580)

          
GC ORF Sequence

           
GTGGCTCTGGCGGCGCCTCGGCCGCCTGGACCAGGCCCCCGAACAGGCCGAGGATGGCCAGCAGGCGGCGCA 
TCAGACCAGCACCTCGGCCAGGTTGCCCTTGCTCTCCAGCCAGGACTTGCGGTCACCGGCGCGCTTCTTGGC 
CAGCAGCATGTCCATGATCTCCAGGGTACCGGTGGCGTCCTCCAGGGTGAGCTGGACCAGCCGCCGGGTATT 
CGGATCCATGGTGGTCTCGCGCAGTTGCAACGGATTCATTTCGCCAAGGCCCTTGAAGCGGGTGACCTGCGG 
CTTGCCGCGCTTCTTCTCGGCGGCCAGGCGCTCGAGGATGCCGTCGCGCTCGGCTTCGTCGAGGGCGTAGTA 
GATTTCCTTGCCGAGGTCGATGCGGTACAGCGGCGGCATCGCCACGTAGACGTGGCCGGCTTCCACCAGCGG 
GCGGAAATGGCGGACGAACAGCGCGCAGAGCAGCGTGGCGATGTGCAGCCCGTCGGAGTCGGCATCCGCGAG 
GATACAGATCTTGCCGTAGCGCAGCTGAGCCAGGTCGCTGGCGCCCGGATCGACGCCGATGGCTACCGCGAT 
GTCGTGGACCTCCTGGCTGGCAAGCACCTCGCCGCCGTCCACTTCCCAGGTGTTCAGGATCTTTCCGCGCAG 
CGGCATGATCGCCTGGAATTCCTTGTCCCGCGCCTGCTTCGCCGAGCCGCCGGCGGAGTCGCCCTCGACCAG 
GAACAGTTCCGCGCGCATCGGTTCCTGTCCGGCGCAGTCGGCCAGTTTGCCGGGCAGCGCCGGCCCCTGGGT 
GATCTTCTTGCGCTCGACCTTCTTGCCCGCCTTGAGGCGACGCCCGGCGTTGCTGATCGCCAGTTCCGCCAG 
TTGCAGGCCGATTTCGGCGTGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTCACCACGCCCGAGACGAACGC 
CGCCGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAACTGCGGTTCCTGCATCTTCATCGAGAG 
GACGAAGGCGATCCGTTCCCAGACGTCCTCGGGCGCCAGCTTGACTCCGCGCGGCAACAGGTTGCGGAACTC 
GCAGAATTCGCGCATGGCGTCGAGCAGGCCCTGGCGCAGGCCGTTCACATGGGTGCCGCCCTGGGCCGTGGG 
AATCAGGTTGACGTAGCTTTCCTGCACCGACTCACCGCCCTCGGGCAGCCACAGCAGGGCCCAGCTCACCGC 
TTCCTTGGAACCTTCGAGGTTGCCGCAGAAGGGTTCATCGGGCAGGCGCGGCAGCTCGGCGACCGCGTCGGT 
CAGGTAGGAGCGCAGGCCGTCCTCGAAGTGCCACTCGACGCGCTCGCCGGTGTTCTTGTCCTCGAACACCAC 
GCTCAGGCCCGGGCACAGCACCGCCTTGGCCTTGAGCACATGCTTGAGGCGGCTGACCGAGAACTTCGCCGA 
ATCGAAATACTTCGGATCCGGCCAGAAATGCACGCTGGTACCGGTATTGCGCTTGCCGACCGTGCCGATGAC 
TTCCAGATCGCTGTCCTTGAAGCCGTCGGCGAAGGTCATCCGGTACTCGTTGGCGTCGCGCTTGACGCGTAC 
CTCGACCCGGGTCGAGAGCGCGTTCACCACCGAGATGCCGACCCCGTGCAAGCCGCCGGAGAACTGGTAGTT 
CTTGTTCGAGAACTTGCCGCCGGCATGCAGCTTGGTAAGGATCAGCTCGACGCCCGGCACGCCCTCTTCCGG 
GTGGATGTCCACCGGCATGCCGCGGCCGTCGTCGATGACTTCCAGCGAGTTGTCCTGGTGCAGGATCACCTG 
CACGCTCTTCGCGTGGCCGGCCAGGGCTTCGTCGACGCTGTTGTCGATGACTTCCTGGGCCAGGTGGTTGGG 
GCGGGTGGTGTCGGTGTACATCCCCGGGCGCTTGCGCACCGGGTCGAGGCCGGAAAGGACTTCGATGGCGTC 
TGCGTTGTAAGTAGCCATGGGGTCTCTATTCAGTCAAAAGTCGAAAAATCGGTGTCGCGCCACAGCGCCGAC 
GGGTAG