ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6807

TrivialName: PA14_65460

AnnotatorUID: danlee

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_65460

PAO1 Ortholog Locus:

Sequence Length: 1638

Protein Length: 545

Start: 5831318

Stop: 5832955

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAD33689.1|AF136403_1 (AF136403) unknown [Pseudomonas aeruginosa] Identities = 179/190 (94%), Positives = 179/190 (94%), Gaps = 2/190 (1%)

Sequence:

TTGTTATCGGTTGCTAGCCGCAAGACTATAGTCCGAATACTCGAAAAGCCAGTTCGCCGCCTCGCCGACACC
GAGCCCGACACCCATGACAGACCGCCTCGCCGCCTGGCTCGAAGAGCTCGACCGGCAACCCCTGCCGATCCC
CGCCAGCCACTATGCCGGCCTGCACGCCGCGCTGAGCGACAGCCGCCGCTCGCTGCGCGAGATCGCCGACCA
GTTGCAGGGCAGCCCGACGCTGGCGTTGTCCATCCTGCGCGAGGCCAATCGCGCCGAGAGCGCCCGCGACAA
CCCCGCGGAAAGCCTGGAGGTGGCCCTCAGCCGCCTCGGCCTGGCGCGCGCGAGCCAACTTCTGAAGACCCT
GCCGAGCATCCAGGATGCGGAGATGCCCAGGGTCCTCGGGCAGATGCTGCTGATCAGCCAGCACGCCATGCA
GCAGGCCAGCGGCCTGTTCGGCGCGCGCCTGGCCAGGCTCTGGCAGGAAATCCACTGGGGCAGCCTGCTGAC
CATGGCTCCGGTCTGGGCGCTGGCCAACGCCCGCCCGCAGCTGCTGGAGCAATGGCAGCAACGCGTGCTGGT
ACAGGGCGAACCGACCCTGCGAGTGGAGCGCGAACTGCTCGGCATGCGCCTGCTGCCGATCTGCCTGGCGCT
GGCCGAACGCTGGCGGCTACCGCAGTGGGTCATCCAGGGCTATCGCCTGCTCGCCTGCGACCGTCGCCTGCT
GGTTCGAGCCTTGCGTATCGCCCGCGACCATCAGTCGCCCCTGCTCCAGCAACAGCAACTCGATGCCCAGCC
CGATCTCGCCCGCTGGCTGACCCAGCCGGCCAACTGCACTCTCCTCGCCAATGGCTTGGCCATCGCCGCGCA
CCAGAGCTGGGACGGGCCGCACATGCTGCGCTGGCAGCGCCTGACCGGTCTGTACCTGGGCCAGCCGCTGAC
CGAAGTCCAGCAGCAGGTGCACATGCTCGCCGCGCAAAGCGCGCGCCTGCACGCCCGGCCGCCGCTGTGGCA
TCCGGCGGTGGCCTTGATCTGGCCCTGGCAGGCCAGCCGCTGGCGTGCCGAAGCGGCGCCCCCGCCGCCGCC
CTCGGCGGAAGCCCTGGCCGAGTGGCGGCAGCATTGCGCCGAGTTGCTCCGCGAGCCCAGCCCGTTCAGCAA
CGTCGTGCAGCTCACCGCCTGTGCCCGCGATGCGCTGCGCGCCTGCGGCCTGCAAAGGATGCTGCTGCTGGT
GGCCGATCGCACACAGGTACACGTGCTGGCGCAGCAGAGCGCCGGACTCGAACCGGGCCAGGAGAAATTGCA
ACTGGAGATTGCCAGCAGCCCGCTGCTGAAGAAACTGTTCCAGCAGCCTGCCCTGCTGCGCATCGGCCCGAA
CAACCAGGACCAGTTGCTGCCGGCCCTCGGCGAACCCTTGCGCCAACTGTTCCCCGGACCTCACCTGCTGCT
GCGCTCGCTGGGCAACGGCTCGCGGGTGGTGATGCTGGTCCTGGCCGACCTCGGCGGCCAGCCGTTCAGCGA
CCTGCATGCCCAGGCCTTCGCCAAGACCGCCCAGTGCACCGAGCGCGCGATCCAGCAGTTCGGCCGCCAGCG
CCGCACGGAATGAGGGACATGCCCGGCACACTGGTCGGGCGCGCTTTCCGTTAA

Translation:

MLSVASRKTIVRILEKPVRRLADTEPDTHDRPPRRLARRARPATPADPRQPLCRPARRAERQPPLAARDRRP
VAGQPDAGVVHPARGQSRRERPRQPRGKPGGGPQPPRPGAREPTSEDPAEHPGCGDAQGPRADAADQPARHA
AGQRPVRRAPGQALAGNPLGQPADHGSGLGAGQRPPAAAGAMAATRAGTGRTDPASGARTARHAPAADLPGA
GRTLAATAVGHPGLSPARLRPSPAGSSLAYRPRPSVAPAPATATRCPARSRPLADPAGQLHSPRQWLGHRRA
PELGRAAHAALAAPDRSVPGPAADRSPAAGAHARRAKRAPARPAAAVASGGGLDLALAGQPLACRSGAPAAA
LGGSPGRVAAALRRVAPRAQPVQQRRAAHRLCPRCAARLRPAKDAAAGGRSHTGTRAGAAERRTRTGPGEIA
TGDCQQPAAEETVPAACPAAHRPEQPGPVAAGPRRTLAPTVPRTSPAAALAGQRLAGGDAGPGRPRRPAVQR
PACPGLRQDRPVHRARDPAVRPPAPHGMRDMPGTLVGRAFR*

AnnotationID:6808 GeneID:6807

AnnotatorUID: diggins

Modification Date/Time: 2005-03-13 15:03:49

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16566

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30697

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:6807

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

201773 gb|AAD33689.1|AF136403_1 (AF136403) unknown [Pseudomonas aeruginosa] 613 38.33 40.13 268 897.0

GC ORFID: `49809`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `5094999`	Stop: `5096636`
Length: `1638`
Start Codon: `TTG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGTTATCGGTTGCTAGCCGCAAGACTATAGTCCGAATACTCGAAAAGCCAGTTCGCCGCCTCGCCGACACC GAGCCCGACACCCATGACAGACCGCCTCGCCGCCTGGCTCGAAGAGCTCGACCGGCAACCCCTGCCGATCCC CGCCAGCCACTATGCCGGCCTGCACGCCGCGCTGAGCGACAGCCGCCGCTCGCTGCGCGAGATCGCCGACCA GTTGCAGGGCAGCCCGACGCTGGCGTTGTCCATCCTGCGCGAGGCCAATCGCGCCGAGAGCGCCCGCGACAA CCCCGCGGAAAGCCTGGAGGTGGCCCTCAGCCGCCTCGGCCTGGCGCGCGCGAGCCAACTTCTGAAGACCCT GCCGAGCATCCAGGATGCGGAGATGCCCAGGGTCCTCGGGCAGATGCTGCTGATCAGCCAGCACGCCATGCA GCAGGCCAGCGGCCTGTTCGGCGCGCGCCTGGCCAGGCTCTGGCAGGAAATCCACTGGGGCAGCCTGCTGAC CATGGCTCCGGTCTGGGCGCTGGCCAACGCCCGCCCGCAGCTGCTGGAGCAATGGCAGCAACGCGTGCTGGT ACAGGGCGAACCGACCCTGCGAGTGGAGCGCGAACTGCTCGGCATGCGCCTGCTGCCGATCTGCCTGGCGCT GGCCGAACGCTGGCGGCTACCGCAGTGGGTCATCCAGGGCTATCGCCTGCTCGCCTGCGACCGTCGCCTGCT GGTTCGAGCCTTGCGTATCGCCCGCGACCATCAGTCGCCCCTGCTCCAGCAACAGCAACTCGATGCCCAGCC CGATCTCGCCCGCTGGCTGACCCAGCCGGCCAACTGCACTCTCCTCGCCAATGGCTTGGCCATCGCCGCGCA CCAGAGCTGGGACGGGCCGCACATGCTGCGCTGGCAGCGCCTGACCGGTCTGTACCTGGGCCAGCCGCTGAC CGAAGTCCAGCAGCAGGTGCACATGCTCGCCGCGCAAAGCGCGCGCCTGCACGCCCGGCCGCCGCTGTGGCA TCCGGCGGTGGCCTTGATCTGGCCCTGGCAGGCCAGCCGCTGGCGTGCCGAAGCGGCGCCCCCGCCGCCGCC CTCGGCGGAAGCCCTGGCCGAGTGGCGGCAGCATTGCGCCGAGTTGCTCCGCGAGCCCAGCCCGTTCAGCAA CGTCGTGCAGCTCACCGCCTGTGCCCGCGATGCGCTGCGCGCCTGCGGCCTGCAAAGGATGCTGCTGCTGGT GGCCGATCGCACACAGGTACACGTGCTGGCGCAGCAGAGCGCCGGACTCGAACCGGGCCAGGAGAAATTGCA ACTGGAGATTGCCAGCAGCCCGCTGCTGAAGAAACTGTTCCAGCAGCCTGCCCTGCTGCGCATCGGCCCGAA CAACCAGGACCAGTTGCTGCCGGCCCTCGGCGAACCCTTGCGCCAACTGTTCCCCGGACCTCACCTGCTGCT GCGCTCGCTGGGCAACGGCTCGCGGGTGGTGATGCTGGTCCTGGCCGACCTCGGCGGCCAGCCGTTCAGCGA CCTGCATGCCCAGGCCTTCGCCAAGACCGCCCAGTGCACCGAGCGCGCGATCCAGCAGTTCGGCCGCCAGCG CCGCACGGAATGAGGGACATGCCCGGCACACTGGTCGGGCGCGCTTTCCGTTAA