ViewGene

Locus Name:
GeneID:
Location:

GeneID:6792
TrivialName: PA14_64760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64760
PAO1 Ortholog Locus:
Sequence Length:4176
Protein Length:1391
Start: 5770125
Stop: 5774300
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAB49550.1| (AP002999) unknown protein [Mesorhizobium loti]
Identities = 102/408 (25%), Positives = 155/408 (37%), Gaps = 43/408 (10%)
Sequence:
ATGGGGCGGCGCCGTGGAACATCAGGGTTCGATGGTTTGCGTCGGCACCTCGATCAAAACCGGGCGATCAGC
GGCCAGGGCATGCTTCAAGGCGCTTTCCAGCTCTTCGCGGGTGGCCGCGTGGAGCGCCTCGACGCCATAGCC
GCGGGCGATCGCGCAGAAGTCCAGGCCGGGCACGTCGAGCCCCGGCGCATCGGGCACCTCGAGCACCCCGGC
GAACCAGCGCAGGGCGCCGTAGGTACCGTTCTTGAGGATGATGAACACCGCCGGCACACGGTATTGCGCGGC
GCTCCAGAGTGCGGTGATGCCATAGTTGGCCGAGCCGTCGCCGATGATCCCGATCACCTGCCGCCGCGGCTG
CGCCAGTTGCGCGCCGACCGCCGCCGGCAGGCCGAAGCCGAGTCCGCCGGCGGCCGGGAAGAAGTAGCTGCC
CGGCTCGCGCATCTCCACGCGCTGCCAGAAGGCGGTCACGGTGGAAGTCGACTCCTTGACGAAGATGGCGTC
GCGCGGCGCCAGCGCATCGATCACGTCGAACACGGTTTCCGGCCGCAGCGGTCCGCCCTCCTCGGCCAGCGC
CGGCGGTCGCGGCAGCGCCTCGGGCAACGGCCGCGCACTGGGGCGGACCTGTTCGAGCAGTGCCTCGAGGGT
CAGCGCGATGTCGCCGACCAACGCGTCGCCCATCGGCGCCCGTGCCGCTTCGCCGGGATCGCAGGTGACCTG
CACCAGCTCGGCGCCGGCCGGCAGGTAATCGCCGGGGGCGAACTGGTGATAGCGGAACACCGGCGCGCCGAC
CACCAGGATCAGGTCGTGGCCGTCCAGCAGCCGGCTGATCCCGGCGATGGCCGCCGGCAGCACGCCGCGGAA
GCAGGCATGGCGGGTGGGGAACGGACAACGCGAGGCCGACGGCGCGACCCAGGCCGGCATCCGCAGCTTCTC
CGCCAGTTGCACGGCCAGGCCGTTGGCATTCGCCCCGTCGACGTCCGGACCGAGCACCAGCACCGGGTTGCG
CGAGCGCGACAGGCGCTCGCCGAGTTCGGCCAGCAATGCCGGCGCCGGCAGCGCGGCGCCGCTGACCTGGCG
CGCGGCCAGGTGTTCGACGCCGGCCGGCGCCGGTTGCGCCCAGTCGTCGTAGGGAATCGACAGGTACACCGG
CGCCCGCGGCGGCAGGCTGGCGGTCTGGATCGCCTGGCTCAACGCGCGCGGCACATCCTGGGCGCAGGCCGG
CTCGTGGCTCCATTTCACCAGCGGCTTGGGCAGTTGTCCGGCATCGACATTGGCGAGCATCGCCTCGACCCC
GATCATCGAGCGCACCTGCTGCCCGGCGGTGATGACCAGGGGGCTATGGGAGTACCAGGCGTTGGTCAGCGC
GCCCATGCCGTTGCCGGTGCCCGCCGCCGCATGCAGGTTGACGAAGGCCGGGCGGCCGCTGGCCAGGGCGAA
GCCATCGGCCATGCCGACCACCGCGCCCTCGTGCAGGCCGAGGATGTAGCGGAAATCCTCGGGGAAGTCCTT
GAGGAACGGCAGCTCGTTGGAGCCGGGGTTGCCGAAGACGGTGGTCAGGCCGTGGCGACGGAGGATCTCGTA
AGACGCGGAATGGACGGTTTTCATGCAGGCCTTCAAGCTCGTTTCCTGGATTTGCGCTACTGTTGCAGCCGC
TCGATAATCAATCAAATCGATACTCTTTCTATAAAAAATAGAACTGGTCTATATGAGTCCGATCGATCTCAA
CCTGATCCGCACCTTCGTCACCCTCTACGAAGCGGGCAGCGTGACCCTCGCCGCGGAGCGCCTGTTCGTCAC
CCAGCCATCGGTGAGCTACGCCCTGGCGCGCCTGCGCGAACTGTTCGACGACGCGTTGTTCACCCGCACCCG
CGACGGCATCCAGCCGACCTTCGTCGCCGAGCAGCTCTACGGCACCTTCCGCGAGTCGCTGACGCGCATCGA
GGGCGCGGTACAGAGCGTTCGCCACTTCGATCCGGCGACCACCGAGCGACGTTTCCGCATCGCCCTCACCGA
TCTCGGCGAGGTGGGTTTCCTCTCGCTGATCCTCGAACGCCTGACCCGCGACGCGCCGTTCGCCGAAGTGGA
AGTGCTGCCGCTGCAGGTGGACGAGGTCGGCGCCTGGCTGAGCAGCGCCAAGGTCGACGCGGCGATCTGCCG
CCAGCCGGTGCCCGGCGCGCGCAGCCAGCGGGTCCTGCACGAGCGCTACGTGTGCCTGCTCAGCGACCGCCA
CCCACGGATCGGCGACAGCCTGAGCCTGGAGCAGTACCTGGCCGAGCGGCACATCGTGGTGACCCGCACCTC
CGGCCACGGCATCGCCGAGGACGTGCTCGAGGCCATGCAGGTGCGGCGCCGCATCAGCCTGCGGGTGCCGCA
CTTCTCGGTGCTGCCGAAGATCATTCCCGGTACCGAGCTGCTGACCATCCTGCCGGCGCAGATCGCCTATCG
CTTCGTCGCCGAAGGCGGCATGCGCATGCTCGAACTGCCCTTCACCCTGCCGCCGTTCGACGTCTCCCTGCA
CTGGCACGAGAGCAGCGAACGCTCGGCGGCGCTGAACTGGTTCCGCACCACCATCGCCGAGGCGATCATCGC
CGCCCAACGCTGAAACGCCGGCGGCCCTCACGCAGCGTCTCCCAGCGTCGGCGAGCGCTCGCGACGCCGCGC
ACCGAGCAGCGGCAACACGGCGGCCGCGGCGACGAACACCGCCGCGAACGCCCCATAGAGGGACAGCGGCTG
CCAGCCGTCGTCGAGCAGGAGCCCGGCCACCAGCGGCGAGAGGATCGCCCCACCGCGACCGACGCCGATCCC
CCAGCCGACCCCGGTGGCGCGCACCGAGGCGTCGTAGAGGCTCGGCGCCAGGGCATACAGGCCGGCCACGCA
GGCGTTGGCGCAAAGCCCGATCAGCAGTCCCAGCGGCAAGGCCGCGCCGGGCAGCCCGGCGCTCAGCGAGAA
CAGCGCGAGCAGAGCGGCGGTAAGCAGCATGAACAGCGCCAGCACCCGTTCCAGGCGAAAGCGCGCGGCAAG
CCCGCCGAGCAAGGCGGCACCGAAGATCCCGCCGATGCTCAGCAGGGTGCCGCCGGTGATGCCCTGGGCGGT
GGACAGGCCGGCGGCGACCAGCAGCTTCGGCGTCCAGCTCATGATGAAGTAGAAGCCGAACATCACCAGGAA
GAACAGCGCCCAGAGCAGCAGCGTGGTGCGTCGCTGGGCGACGCAGAGCAACCGGGCGAGGCGGCTACCGTG
CTCCGCTCCGCCGCCAGGCGGGCTCGGCAGTTCGGCGAGCGCCGCGCGGCCCAGGCGCCGGGCCAGCGCGTT
GACCCGTTGCAACGCCCGCGGCGGCCGGCGCGCCAGGAGGAAGTCCAGCGACTCCGGCAGGCACAGGCAGAC
CAGCGGGATCACCGCCAGGGTCAGGCCAGCGCCGAAGACGAACACCGAGCGCCAGCCCCAGGCGCCGATCAG
CCATACCGCGAGCAGTCCGCCAAGGGTCGCGCCGAGCGCGTAGCCGGTGGATTGCAGGCTTACCGCCAGGCC
GCGCCAACGGCGCGAGGCGTACTCGCTGGCGATCACGTTGCTGCTGGCGAGGATGCCGCCGATACCCAGCCC
GGTCAGCCCGCGCAGCAACGCCAGTTGCCAGGCCGCCTGGCTCAGCGCCGAGGCGAGCATGCCCAGGCCCGA
CAGCGCCAGGCAGGCGAGGATCAGCGGGCGGCGCCCCCAGCGGTCGGCCCAGGGCGCGATGAACAGCGAGCC
GGCGGCCATGCCGAAAAGGCCGGCGCTGAGCAGCAGGCCGATCTCGGCGCCGCCCAGGTTCCATTCGGCGGC
CACCGAAGATGCGGTGAAGGCCATCACCAGCACGTCGAAGCCATCGATCAGGTTGAGCACGATGCACACAGC
CACCGCCAGCCACTGGAACGGCCGCATCGGTTCGTCGTCGAGAGCGCGGCGCAAGTCCCGGTTCATGGGCGG
CCCTCCCCGAGCGGACAGGAAAGAAGCGACGGCAGGCGGGAGCGAGGCGCGGGAATGCAGGAATCCATCATC
GGGAAGACCCTTTTTCTTGTTGTTGTAGGCACGGCAAGCGCAGGCACCCTGGCACCGTTGCGTCGATGCCGC
AATCCTATTGGATCCATTTGTGCGACAAGAAAACGGAAGGCCAGCGGATATTCCACTGTCAGCGAAATCTGA
Translation:
MGRRRGTSGFDGLRRHLDQNRAISGQGMLQGAFQLFAGGRVERLDAIAAGDRAEVQAGHVEPRRIGHLEHPG
EPAQGAVGTVLEDDEHRRHTVLRGAPECGDAIVGRAVADDPDHLPPRLRQLRADRRRQAEAESAGGREEVAA
RLAHLHALPEGGHGGSRLLDEDGVARRQRIDHVEHGFRPQRSALLGQRRRSRQRLGQRPRTGADLFEQCLEG
QRDVADQRVAHRRPCRFAGIAGDLHQLGAGRQVIAGGELVIAEHRRADHQDQVVAVQQPADPGDGRRQHAAE
AGMAGGERTTRGRRRDPGRHPQLLRQLHGQAVGIRPVDVRTEHQHRVARARQALAEFGQQCRRRQRGAADLA
RGQVFDAGRRRLRPVVVGNRQVHRRPRRQAGGLDRLAQRARHILGAGRLVAPFHQRLGQLSGIDIGEHRLDP
DHRAHLLPGGDDQGAMGVPGVGQRAHAVAGARRRMQVDEGRAAAGQGEAIGHADHRALVQAEDVAEILGEVL
EERQLVGAGVAEDGGQAVATEDLVRRGMDGFHAGLQARFLDLRYCCSRSIINQIDTLSIKNRTGLYESDRSQ
PDPHLRHPLRSGQRDPRRGAPVRHPAIGELRPGAPARTVRRRVVHPHPRRHPADLRRRAALRHLPRVADAHR
GRGTERSPLRSGDHRATFPHRPHRSRRGGFPLADPRTPDPRRAVRRSGSAAAAGGRGRRLAEQRQGRRGDLP
PAGARRAQPAGPARALRVPAQRPPPTDRRQPEPGAVPGRAAHRGDPHLRPRHRRGRARGHAGAAPHQPAGAA
LLGAAEDHSRYRAADHPAGADRLSLRRRRRHAHARTALHPAAVRRLPALAREQRTLGGAELVPHHHRRGDHR
RPTLKRRRPSRSVSQRRRALATPRTEQRQHGGRGDEHRRERPIEGQRLPAVVEQEPGHQRREDRPTATDADP
PADPGGAHRGVVEARRQGIQAGHAGVGAKPDQQSQRQGRAGQPGAQREQREQSGGKQHEQRQHPFQAKARGK
PAEQGGTEDPADAQQGAAGDALGGGQAGGDQQLRRPAHDEVEAEHHQEEQRPEQQRGASLGDAEQPGEAATV
LRSAARRARQFGERRAAQAPGQRVDPLQRPRRPARQEEVQRLRQAQADQRDHRQGQASAEDEHRAPAPGADQ
PYREQSAKGRAERVAGGLQAYRQAAPTARGVLAGDHVAAGEDAADTQPGQPAQQRQLPGRLAQRRGEHAQAR
QRQAGEDQRAAPPAVGPGRDEQRAGGHAEKAGAEQQADLGAAQVPFGGHRRCGEGHHQHVEAIDQVEHDAHS
HRQPLERPHRFVVESAAQVPVHGRPSPSGQERSDGRRERGAGMQESIIGKTLFLVVVGTASAGTLAPLRRCR
NPIGSICATRKRKASGYSTVSEI*
AnnotationID:6793GeneID:6792
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 13:01:53
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:13311
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30667
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49794How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 5033806Stop: 5037981
Length: 4176
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGGGCGGCGCCGTGGAACATCAGGGTTCGATGGTTTGCGTCGGCACCTCGATCAAAACCGGGCGATCAGC
GGCCAGGGCATGCTTCAAGGCGCTTTCCAGCTCTTCGCGGGTGGCCGCGTGGAGCGCCTCGACGCCATAGCC
GCGGGCGATCGCGCAGAAGTCCAGGCCGGGCACGTCGAGCCCCGGCGCATCGGGCACCTCGAGCACCCCGGC
GAACCAGCGCAGGGCGCCGTAGGTACCGTTCTTGAGGATGATGAACACCGCCGGCACACGGTATTGCGCGGC
GCTCCAGAGTGCGGTGATGCCATAGTTGGCCGAGCCGTCGCCGATGATCCCGATCACCTGCCGCCGCGGCTG
CGCCAGTTGCGCGCCGACCGCCGCCGGCAGGCCGAAGCCGAGTCCGCCGGCGGCCGGGAAGAAGTAGCTGCC
CGGCTCGCGCATCTCCACGCGCTGCCAGAAGGCGGTCACGGTGGAAGTCGACTCCTTGACGAAGATGGCGTC
GCGCGGCGCCAGCGCATCGATCACGTCGAACACGGTTTCCGGCCGCAGCGGTCCGCCCTCCTCGGCCAGCGC
CGGCGGTCGCGGCAGCGCCTCGGGCAACGGCCGCGCACTGGGGCGGACCTGTTCGAGCAGTGCCTCGAGGGT
CAGCGCGATGTCGCCGACCAACGCGTCGCCCATCGGCGCCCGTGCCGCTTCGCCGGGATCGCAGGTGACCTG
CACCAGCTCGGCGCCGGCCGGCAGGTAATCGCCGGGGGCGAACTGGTGATAGCGGAACACCGGCGCGCCGAC
CACCAGGATCAGGTCGTGGCCGTCCAGCAGCCGGCTGATCCCGGCGATGGCCGCCGGCAGCACGCCGCGGAA
GCAGGCATGGCGGGTGGGGAACGGACAACGCGAGGCCGACGGCGCGACCCAGGCCGGCATCCGCAGCTTCTC
CGCCAGTTGCACGGCCAGGCCGTTGGCATTCGCCCCGTCGACGTCCGGACCGAGCACCAGCACCGGGTTGCG
CGAGCGCGACAGGCGCTCGCCGAGTTCGGCCAGCAATGCCGGCGCCGGCAGCGCGGCGCCGCTGACCTGGCG
CGCGGCCAGGTGTTCGACGCCGGCCGGCGCCGGTTGCGCCCAGTCGTCGTAGGGAATCGACAGGTACACCGG
CGCCCGCGGCGGCAGGCTGGCGGTCTGGATCGCCTGGCTCAACGCGCGCGGCACATCCTGGGCGCAGGCCGG
CTCGTGGCTCCATTTCACCAGCGGCTTGGGCAGTTGTCCGGCATCGACATTGGCGAGCATCGCCTCGACCCC
GATCATCGAGCGCACCTGCTGCCCGGCGGTGATGACCAGGGGGCTATGGGAGTACCAGGCGTTGGTCAGCGC
GCCCATGCCGTTGCCGGTGCCCGCCGCCGCATGCAGGTTGACGAAGGCCGGGCGGCCGCTGGCCAGGGCGAA
GCCATCGGCCATGCCGACCACCGCGCCCTCGTGCAGGCCGAGGATGTAGCGGAAATCCTCGGGGAAGTCCTT
GAGGAACGGCAGCTCGTTGGAGCCGGGGTTGCCGAAGACGGTGGTCAGGCCGTGGCGACGGAGGATCTCGTA
AGACGCGGAATGGACGGTTTTCATGCAGGCCTTCAAGCTCGTTTCCTGGATTTGCGCTACTGTTGCAGCCGC
TCGATAATCAATCAAATCGATACTCTTTCTATAAAAAATAGAACTGGTCTATATGAGTCCGATCGATCTCAA
CCTGATCCGCACCTTCGTCACCCTCTACGAAGCGGGCAGCGTGACCCTCGCCGCGGAGCGCCTGTTCGTCAC
CCAGCCATCGGTGAGCTACGCCCTGGCGCGCCTGCGCGAACTGTTCGACGACGCGTTGTTCACCCGCACCCG
CGACGGCATCCAGCCGACCTTCGTCGCCGAGCAGCTCTACGGCACCTTCCGCGAGTCGCTGACGCGCATCGA
GGGCGCGGTACAGAGCGTTCGCCACTTCGATCCGGCGACCACCGAGCGACGTTTCCGCATCGCCCTCACCGA
TCTCGGCGAGGTGGGTTTCCTCTCGCTGATCCTCGAACGCCTGACCCGCGACGCGCCGTTCGCCGAAGTGGA
AGTGCTGCCGCTGCAGGTGGACGAGGTCGGCGCCTGGCTGAGCAGCGCCAAGGTCGACGCGGCGATCTGCCG
CCAGCCGGTGCCCGGCGCGCGCAGCCAGCGGGTCCTGCACGAGCGCTACGTGTGCCTGCTCAGCGACCGCCA
CCCACGGATCGGCGACAGCCTGAGCCTGGAGCAGTACCTGGCCGAGCGGCACATCGTGGTGACCCGCACCTC
CGGCCACGGCATCGCCGAGGACGTGCTCGAGGCCATGCAGGTGCGGCGCCGCATCAGCCTGCGGGTGCCGCA
CTTCTCGGTGCTGCCGAAGATCATTCCCGGTACCGAGCTGCTGACCATCCTGCCGGCGCAGATCGCCTATCG
CTTCGTCGCCGAAGGCGGCATGCGCATGCTCGAACTGCCCTTCACCCTGCCGCCGTTCGACGTCTCCCTGCA
CTGGCACGAGAGCAGCGAACGCTCGGCGGCGCTGAACTGGTTCCGCACCACCATCGCCGAGGCGATCATCGC
CGCCCAACGCTGAAACGCCGGCGGCCCTCACGCAGCGTCTCCCAGCGTCGGCGAGCGCTCGCGACGCCGCGC
ACCGAGCAGCGGCAACACGGCGGCCGCGGCGACGAACACCGCCGCGAACGCCCCATAGAGGGACAGCGGCTG
CCAGCCGTCGTCGAGCAGGAGCCCGGCCACCAGCGGCGAGAGGATCGCCCCACCGCGACCGACGCCGATCCC
CCAGCCGACCCCGGTGGCGCGCACCGAGGCGTCGTAGAGGCTCGGCGCCAGGGCATACAGGCCGGCCACGCA
GGCGTTGGCGCAAAGCCCGATCAGCAGTCCCAGCGGCAAGGCCGCGCCGGGCAGCCCGGCGCTCAGCGAGAA
CAGCGCGAGCAGAGCGGCGGTAAGCAGCATGAACAGCGCCAGCACCCGTTCCAGGCGAAAGCGCGCGGCAAG
CCCGCCGAGCAAGGCGGCACCGAAGATCCCGCCGATGCTCAGCAGGGTGCCGCCGGTGATGCCCTGGGCGGT
GGACAGGCCGGCGGCGACCAGCAGCTTCGGCGTCCAGCTCATGATGAAGTAGAAGCCGAACATCACCAGGAA
GAACAGCGCCCAGAGCAGCAGCGTGGTGCGTCGCTGGGCGACGCAGAGCAACCGGGCGAGGCGGCTACCGTG
CTCCGCTCCGCCGCCAGGCGGGCTCGGCAGTTCGGCGAGCGCCGCGCGGCCCAGGCGCCGGGCCAGCGCGTT
GACCCGTTGCAACGCCCGCGGCGGCCGGCGCGCCAGGAGGAAGTCCAGCGACTCCGGCAGGCACAGGCAGAC
CAGCGGGATCACCGCCAGGGTCAGGCCAGCGCCGAAGACGAACACCGAGCGCCAGCCCCAGGCGCCGATCAG
CCATACCGCGAGCAGTCCGCCAAGGGTCGCGCCGAGCGCGTAGCCGGTGGATTGCAGGCTTACCGCCAGGCC
GCGCCAACGGCGCGAGGCGTACTCGCTGGCGATCACGTTGCTGCTGGCGAGGATGCCGCCGATACCCAGCCC
GGTCAGCCCGCGCAGCAACGCCAGTTGCCAGGCCGCCTGGCTCAGCGCCGAGGCGAGCATGCCCAGGCCCGA
CAGCGCCAGGCAGGCGAGGATCAGCGGGCGGCGCCCCCAGCGGTCGGCCCAGGGCGCGATGAACAGCGAGCC
GGCGGCCATGCCGAAAAGGCCGGCGCTGAGCAGCAGGCCGATCTCGGCGCCGCCCAGGTTCCATTCGGCGGC
CACCGAAGATGCGGTGAAGGCCATCACCAGCACGTCGAAGCCATCGATCAGGTTGAGCACGATGCACACAGC
CACCGCCAGCCACTGGAACGGCCGCATCGGTTCGTCGTCGAGAGCGCGGCGCAAGTCCCGGTTCATGGGCGG
CCCTCCCCGAGCGGACAGGAAAGAAGCGACGGCAGGCGGGAGCGAGGCGCGGGAATGCAGGAATCCATCATC
GGGAAGACCCTTTTTCTTGTTGTTGTAGGCACGGCAAGCGCAGGCACCCTGGCACCGTTGCGTCGATGCCGC
AATCCTATTGGATCCATTTGTGCGACAAGAAAACGGAAGGCCAGCGGATATTCCACTGTCAGCGAAATCTGA