ViewGene
Locus Name:
GeneID:
Location:

GeneID:6790
TrivialName: PA14_64630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64630
PAO1 Ortholog Locus:
Sequence Length:1005
Protein Length:334
Start: 5756674
Stop: 5757678
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAA88562.1| (M29297) unknown protein [Streptomyces fradiae]
Identities = 70/230 (30%), Positives = 92/230 (40%), Gaps = 31/230 (13%)
Sequence:
GTGGGCCTCGGCCTGTTCCAGCAGGCTGGCGGCGCTGTCGCCGGAGACTTCCCGCTGCGACCGGGCGAAGCG
CAGGCGCACTTCGCGCGGCGCCTCCCCACTGCGCCAGCGCGGGACGCTGAAGGATTCCGTCTGCAAGCCGGC
GAAGCGTGCCCCCAGTTGCTCGCCCACCGCCTCGACGAAAGCCGCCGGCCCGCAGGCCAAGGCTTGGCTGCG
CGCCAGGTCGGCTGCCCAGCCGTCCAGGTGGCGCGGCTGGAAATGCCCCTCCAGGCAGCCATCGGCCCGCGC
CCCGCGGGTCAGGCTCCAGCGCAACTCCAGGTTCGGGTGGCGCGCCGCCAGCGCCTCCAGCTCGCCGAACCA
GGCGCGCTGGCCGGGATGACGGGCGTAGTGCAGCCACAGCACGGGACCGCGATAGCCGTTCTCCAGCGCCTC
GCGGAGCAGGCCGAGCAAGGGCGTCAGGCCGCTGCCGGCGGCCAGCAGGCAGACCGCCTCGGCCTGCATCGG
CCAGCGCAGATCGCCTTGCGCGGGCTGCAACTCGACACGCTGGCCGACCGCCAGGTGTTCGCACAACCAGGG
CGAGAGCAGCCCGTCCGGGTGACGCTTGACGGCGATTTCCAGGCGCTCGCCGACCACCCGGGTCAGGCTGTA
GCTGCGCCCGACCCGCACCCCGTCGCGCTCCGCCAGCAGTTGGATGTGCTGGCCCGGCCGCGCCGGCGGCCA
GCCGGGGGCGGTACGCAGGGCCAGGGCGAGCATATCGTCGGCCACCCAGTAGCGTGCCTCGACCCGCGCATA
GTGgcGGTTCAGCGACGCCAGCGGATGGGCGTGGCGCAGCAGgccgtCGACATCGgcctGgggCAGCCAGCC
ACGGGCGGCGAGACGGCGCAGGGGTGCGAGCAAAGGGGTCAGGAGAGCGAGGGGAAGCAAGGCCATCGAGAA
TATTTCAGTGAACGATCGTTCACAAAACTTTGCCCGTTCCGCGCAATCGAGTCAACAAGCGTTCACTGA
Translation:
MGLGLFQQAGGAVAGDFPLRPGEAQAHFARRLPTAPARDAEGFRLQAGEACPQLLAHRLDESRRPAGQGLAA
RQVGCPAVQVARLEMPLQAAIGPRPAGQAPAQLQVRVARRQRLQLAEPGALAGMTGVVQPQHGTAIAVLQRL
AEQAEQGRQAAAGGQQADRLGLHRPAQIALRGLQLDTLADRQVFAQPGREQPVRVTLDGDFQALADHPGQAV
AAPDPHPVALRQQLDVLARPRRRPAGGGTQGQGEHIVGHPVACLDPRIVAVQRRQRMGVAQQAVDIGLGQPA
TGGETAQGCEQRGQESEGKQGHREYFSERSFTKLCPFRAIESTSVH*
AnnotationID:6791GeneID:6790
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 12:12:27
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:16548




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30663




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49792How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5020355Stop: 5021359

          
Length: 1005


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGGGCCTCGGCCTGTTCCAGCAGGCTGGCGGCGCTGTCGCCGGAGACTTCCCGCTGCGACCGGGCGAAGCG 
CAGGCGCACTTCGCGCGGCGCCTCCCCACTGCGCCAGCGCGGGACGCTGAAGGATTCCGTCTGCAAGCCGGC 
GAAGCGTGCCCCCAGTTGCTCGCCCACCGCCTCGACGAAAGCCGCCGGCCCGCAGGCCAAGGCTTGGCTGCG 
CGCCAGGTCGGCTGCCCAGCCGTCCAGGTGGCGCGGCTGGAAATGCCCCTCCAGGCAGCCATCGGCCCGCGC 
CCCGCGGGTCAGGCTCCAGCGCAACTCCAGGTTCGGGTGGCGCGCCGCCAGCGCCTCCAGCTCGCCGAACCA 
GGCGCGCTGGCCGGGATGACGGGCGTAGTGCAGCCACAGCACGGGACCGCGATAGCCGTTCTCCAGCGCCTC 
GCGGAGCAGGCCGAGCAAGGGCGTCAGGCCGCTGCCGGCGGCCAGCAGGCAGACCGCCTCGGCCTGCATCGG 
CCAGCGCAGATCGCCTTGCGCGGGCTGCAACTCGACACGCTGGCCGACCGCCAGGTGTTCGCACAACCAGGG 
CGAGAGCAGCCCGTCCGGGTGACGCTTGACGGCGATTTCCAGGCGCTCGCCGACCACCCGGGTCAGGCTGTA 
GCTGCGCCCGACCCGCACCCCGTCGCGCTCCGCCAGCAGTTGGATGTGCTGGCCCGGCCGCGCCGGCGGCCA 
GCCGGGGGCGGTACGCAGGGCCAGGGCGAGCATATCGTCGGCCACCCAGTAGCGTGCCTCGACCCGCGCATA 
GTGgcGGTTCAGCGACGCCAGCGGATGGGCGTGGCGCAGCAGgccgtCGACATCGgcctGgggCAGCCAGCC 
ACGGGCGGCGAGACGGCGCAGGGGTGCGAGCAAAGGGGTCAGGAGAGCGAGGGGAAGCAAGGCCATCGAGAA 
TATTTCAGTGAACGATCGTTCACAAAACTTTGCCCGTTCCGCGCAATCGAGTCAACAAGCGTTCACTGA