ViewGene
Locus Name:
GeneID:
Location:

GeneID:6786
TrivialName: PA14_64340
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64340
PAO1 Ortholog Locus:
Sequence Length:141
Protein Length:46
Start: 5734129
Stop: 5734269
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Inactivated 2/01/06. PA14_64330 (GeneID 3605 ) and PA14_64340 (GeneID 6786) replaced by PA14_64335 (GeneID 7377). Homology: gb|AAG08249.1|AE004900_3 (AE004900) urease accessory protein [Pseudomonas aeruginosa PAO1]
Identities = 45/46 (97%), Positives = 46/46 (100%)
Sequence:
TTGCCCGGAGGCCTGCTGGTGGCGCGCTGCCTGGCCGACGAGGCGCTGCACGCGCGAGCCTGGCTGATCGAA
CTCTGGCGCCTGCTGCGGCCGGCGCTGCTCGGCCGCGAGGCCGTTCCCCCACGCATCTGGAGTACCTGA
Translation:
MPGGLLVARCLADEALHARAWLIELWRLLRPALLGREAVPPRIWST*
AnnotationID:6787GeneID:6786
AnnotatorUID: danlee
Modification Date/Time: 2006-02-01 14:02:48
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAO58319.1| (AE016873) urease accessory protein UreD [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 281

 Score = 82.4 bits (202), Expect = 6e-16
 Identities = 37/43 (86%), Positives = 41/43 (95%)

>gb|AAN68450.1|AE016478_2 (AE016784) urease accessory protein UreD [Pseudomonas putida
           KT2440]
          Length = 277

 Score = 48.5 bits (114), Expect = 9e-06
 Identities = 23/44 (52%), Positives = 28/44 (63%)








 
Structural Features:






   
Genomic Context:






   
Comment:
Inactivated 2/01/06.  PA14_64330  (GeneID 3605 ) and PA14_64340 (GeneID 6786) replaced by PA14_64335 (GeneID 7377).


















    ReferenceID:16542




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30655




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49788How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4997810Stop: 4997950

          
Length: 141


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
TTGCCCGGAGGCCTGCTGGTGGCGCGCTGCCTGGCCGACGAGGCGCTGCACGCGCGAGCCTGGCTGATCGAA 
CTCTGGCGCCTGCTGCGGCCGGCGCTGCTCGGCCGCGAGGCCGTTCCCCCACGCATCTGGAGTACCTGA