ViewGene
Locus Name:
GeneID:
Location:

GeneID:6781
TrivialName: PA14_64150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64150
PAO1 Ortholog Locus:
Sequence Length:897
Protein Length:298
Start: 5716757
Stop: 5715861
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP22952.1| (AY272046) hypothetical protein 1 [Rhizobium arachis]
Identities = 52/181 (28%), Positives = 72/181 (39%), Gaps = 25/181 (13%)
Sequence:
GTGGTGGCTGGCGGTGCGCCATCAATCGGCGCGGCGGCGGCCGCTGATGCGGATCCAGCCTTCGCGCTCGGC
GGTCGGGTCGAGATCGAAGTGTGCGGAGTAGGCCGCGCGGACCTCCTCGGCCTGCTCGGCGAGGATGCCGGA
CAGCGCCAGCAGGCCGCCGGGACGTACCAGGCCGGTCAGTTGCGGGGCGAGGGAAACCAGCGGGCCGGCGAG
GATATTGGCGACCAGCACGTCGGCCTGTCGCTGCGGCAGGTCCGCCGGCAGGTAGACCGGGAACCGCGCGGG
CTCGATACCGTTGCGCGAGGCATTGTCGCGCGAGGCTTCCAGGGCCTGTGGATCGATGTCGGTGCCGACCGC
CCGTTCGGCGCCGAGCAGCAGCGCGGCGATGGCGAGGATTCCCGAGCCGCAACCGAAGTCGAGCACCTGCCG
GCCGGCCAGTTCCTGGCCGTCGAGCCATTCCAGGCACAGCGCGGTGGTCGGGTGGGTGCCGGTGCCGAAGGC
CAGGCCCGGATCGAGCAGCAGGTTGACCGCGTCCGGCTCGGGGGCGGCGTGCCAGCTCGGCACGATCCACAG
GCGGCGGCCGAAACGCATCGGCTGGAAGTTGTCCATCCAGCTGCGTTCCCAATCCTGGTCGGCGATTTCCTC
GACATGGTGCTCGGGCAGGTCGCCGCCGGTAAGCAAGGCGAGGTGGGCGAGCAGGGCGGTCTCGTCGGTGTC
CGCTTCGAACAGCGCCAGCAGGTGGGTGCGCGACCACAGCGGGGTGGTGCCGAGGTCCGGCTCGaagatcGG
CTGGTCTTCGGCGTCCATGAAGGTCACGGAGACGGCGCCGACTTCGAGCAGGGCGTCTTCGTAGGTTTCGGC
CTGTTCCGGGGTGATGGCCAGGCGAACTTGTAA
Translation:
MVAGGAPSIGAAAAADADPAFALGGRVEIEVCGVGRADLLGLLGEDAGQRQQAAGTYQAGQLRGEGNQRAGE
DIGDQHVGLSLRQVRRQVDREPRGLDTVARGIVARGFQGLWIDVGADRPFGAEQQRGDGEDSRAATEVEHLP
AGQFLAVEPFQAQRGGRVGAGAEGQARIEQQVDRVRLGGGVPARHDPQAAAETHRLEVVHPAAFPILVGDFL
DMVLGQVAAGKQGEVGEQGGLVGVRFEQRQQVGARPQRGGAEVRLEDRLVFGVHEGHGDGADFEQGVFVGFG
LFRGDGQANL*
AnnotationID:6782GeneID:6781
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 07:07:00
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:16535




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30646




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49783How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4980437Stop: 4979541

          
Length: 897


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGGTGGCTGGCGGTGCGCCATCAATCGGCGCGGCGGCGGCCGCTGATGCGGATCCAGCCTTCGCGCTCGGC 
GGTCGGGTCGAGATCGAAGTGTGCGGAGTAGGCCGCGCGGACCTCCTCGGCCTGCTCGGCGAGGATGCCGGA 
CAGCGCCAGCAGGCCGCCGGGACGTACCAGGCCGGTCAGTTGCGGGGCGAGGGAAACCAGCGGGCCGGCGAG 
GATATTGGCGACCAGCACGTCGGCCTGTCGCTGCGGCAGGTCCGCCGGCAGGTAGACCGGGAACCGCGCGGG 
CTCGATACCGTTGCGCGAGGCATTGTCGCGCGAGGCTTCCAGGGCCTGTGGATCGATGTCGGTGCCGACCGC 
CCGTTCGGCGCCGAGCAGCAGCGCGGCGATGGCGAGGATTCCCGAGCCGCAACCGAAGTCGAGCACCTGCCG 
GCCGGCCAGTTCCTGGCCGTCGAGCCATTCCAGGCACAGCGCGGTGGTCGGGTGGGTGCCGGTGCCGAAGGC 
CAGGCCCGGATCGAGCAGCAGGTTGACCGCGTCCGGCTCGGGGGCGGCGTGCCAGCTCGGCACGATCCACAG 
GCGGCGGCCGAAACGCATCGGCTGGAAGTTGTCCATCCAGCTGCGTTCCCAATCCTGGTCGGCGATTTCCTC 
GACATGGTGCTCGGGCAGGTCGCCGCCGGTAAGCAAGGCGAGGTGGGCGAGCAGGGCGGTCTCGTCGGTGTC 
CGCTTCGAACAGCGCCAGCAGGTGGGTGCGCGACCACAGCGGGGTGGTGCCGAGGTCCGGCTCGaagatcGG 
CTGGTCTTCGGCGTCCATGAAGGTCACGGAGACGGCGCCGACTTCGAGCAGGGCGTCTTCGTAGGTTTCGGC 
CTGTTCCGGGGTGATGGCCAGGCGAACTTGTAA