ViewGene

Locus Name:
GeneID:
Location:

GeneID:6775
TrivialName: PA14_63950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63950
PAO1 Ortholog Locus:
Sequence Length:2208
Protein Length:735
Start: 5698312
Stop: 5700519
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK22771.1| (AE005754) hypothetical protein [Caulobacter crescentus CB15]
Identities = 208/807 (25%), Positives = 298/807 (36%), Gaps = 169/807 (20%)
Sequence:
GTGTGCGTCCTTGCATGGCATGGCTTCCTGGCGGCGGTAGAGGGCTCAGTAGTTCAGGGTCAGGCTCATGGT
CAGGTTGCGCGGCTCGCCGGGGGCGACCCAGACGTTGTTATAGGAACGCTCGTAGTAGCGACGATCGAAGAG
GTTGTTGACGTTCACCCCGAGGGTCGCATTGCTCGCCAGCGGATAGTGCGCGAGCAGGTCGACGGTGGTGTA
GGCCGGCAGTTCGAAGCCGCTGTCGCTGCTGTCGCCGGCGCGCTCGCCGACATAGTTGACCGCCGCGCCGGC
GTCGGCGCCGTGCAGCCAGCCTTCGCGGAACTCGTAGACGCCCATCAGGCTGCCGCTGTGCTTCGGCACGTT
GAGCAGGCGGCTGCCACGGGCGATGTTCTCGTCCTTGGTCACTTCGGCGTCGATATAGGCGTAGGCGCCGAT
CAGCCGCAACTGCTCGGTGAGCTGGCCGCTGAACTGCAGGTCGAAGCCCTGGCTGCGCGCCTCGCCGGCGGT
CTGCTGGTAACCGGGATTGCTCGGGTCGGCGGTGAGCACGTTCTTCTTTTTCAGGTGGAACGCGGCGAGGGT
CATGCCCAGCCGGCCATCGAGCAGGTCGAGCTTCACCCCCGCCTCGTAGCCGCGCCCCTCCTCCGGGTCGAA
GGCCTTGCCGGCCATGTCGGTACCGCCGTTGGGCTTGAAGGATTTCGAGGCGTTGGCGAACAGGCCGACCTC
CGGGGTCGCCTGGTACAACACGCCGATGCGCGGGGTGGCGGCACGCTGGGTCTGCTGCGAGCTGGTGTCGCG
GAAGCGGCCATTGTTCAGGCGCGTGGCGTTCATGTCCTGGCGGTAGCGGTCGAAGCGCACGCCGAGCAGGCC
GCGCCATTTCTCGTTGAACTCGATCTGGTCCTGCAGGTTGAGGGCCATCGCGTCGACTTCCTCGTGGTTGCG
GTCGTCGCGTCCGAAGGGTGGTTTCGGCTGGCCGTAGACCGGCCGGCGGATGTCGATGGCATAGGGGTTGCG
CGACGGGATGCTACGCAGGATCAGTTCGTCGTTGTGGTAGCGCTCGTACTCCAGGCCCATCAGCAACTGGTG
GCGGATCGAGCCGGTATGGAGGTCGCCGAGCAGGTCGAGCTGGGTGATGCTGTCGTGCCACTCGAAGTCGCG
GTAGCGGTACTCCCGGCGCAGGGTGTAGCCGTCGGCGGCGAGGCTGGAGTTCTCCGAGGCGTAGCCGTCCAG
GTGGCCATGCTTGTAGTGGCTGGCCAGGCGCAGGCTCCACTGCTCGTTGAGGTGATGGCGCAGGGTGGCCTG
GAGGGTTTCGTTGTTGTTGTCGATCTTGCCGTCGTCCGGTTCGCCGAAGAACCGCGAGCGCGGCAGGCTGCC
CAGGTGGTTGTGCGGCGCCACGGTGCCGCGGTCGAAGACCTGGCGGTTGCGCACCACCTCGGCTTCCACCAG
CAACGAGGTGTCCGGGTCCAGTTGCCAGCTGAACGATGGCGCCACCAGCAGGCGCTGGCCGTCGGCGTAGTC
GCGGAAGCCCTTGCTGTCCTCCACCGCCAGGTTCATCCGGTAGAGCAGGTCGCCCTCTTCGTCCAGCGGCGT
GTTCAGGTCCAGGGTCGAGCGGTAGCGGTCCCAGCTGCCGGCGCTGGCATGCAAGCGGGCGAAGCGCTCGGC
CTGGGGCTTCTTGGTCACCAGGTTCACCGTGCCGCCGGGATCGCCGCGCCCGTACAGGCTGGAGGCCGGTCC
CTTGAGGATTTCCACGCGCTCGATGGTGGCGCTGTCCGGGGCGTTCATATAGCCGCGGTTGGCGCTGAAGCC
GTCGCGGTAGAACTCCGAAGTGGTGAAGCCACGGACGTTGTACTCGAACATCGTCAGGCCGCCGAAGTTGTT
CTGCCGCGAGACCCCGCCGGCGAAGTCCAGCGCCCGTTCGATACGAGCGCTGTCAAGGTCGTCGAGCACCTG
GCGCGGCACCACGCTGATGGCTTGCGGGATGTCCTCGATACGGGTGTCGGTGCGCGTCGCGCTGGCCGACCG
ATTGGCCCGGTAGCCCTGCACCGGGCCCTCCGCGCGCTCCGCTTCGGCGGTGACAGTGAGGACCTCAAGCTC
TGCGGGACTTTCCGTTTCCGCCCAGAGCGCCGGACTGCTGCAACCGAGGCCGACACCGAGGACAAGCGACAC
ACTGACTCTCATGGGAAATCGCACCAGAAAAGAAATGATATACTATAA
Translation:
MCVLAWHGFLAAVEGSVVQGQAHGQVARLAGGDPDVVIGTLVVATIEEVVDVHPEGRIARQRIVREQVDGGV
GRQFEAAVAAVAGALADIVDRRAGVGAVQPAFAELVDAHQAAAVLRHVEQAAATGDVLVLGHFGVDIGVGAD
QPQLLGELAAELQVEALAARLAGGLLVTGIARVGGEHVLLFQVERGEGHAQPAIEQVELHPRLVAAPLLRVE
GLAGHVGTAVGLEGFRGVGEQADLRGRLVQHADARGGGTLGLLRAGVAEAAIVQARGVHVLAVAVEAHAEQA
APFLVELDLVLQVEGHRVDFLVVAVVASEGWFRLAVDRPADVDGIGVARRDATQDQFVVVVALVLQAHQQLV
ADRAGMEVAEQVELGDAVVPLEVAVAVLPAQGVAVGGEAGVLRGVAVQVAMLVVAGQAQAPLLVEVMAQGGL
EGFVVVVDLAVVRFAEEPRARQAAQVVVRRHGAAVEDLAVAHHLGFHQQRGVRVQLPAERWRHQQALAVGVV
AEALAVLHRQVHPVEQVALFVQRRVQVQGRAVAVPAAGAGMQAGEALGLGLLGHQVHRAAGIAAPVQAGGRS
LEDFHALDGGAVRGVHIAAVGAEAVAVELRSGEATDVVLEHRQAAEVVLPRDPAGEVQRPFDTSAVKVVEHL
ARHHADGLRDVLDTGVGARRAGRPIGPVALHRALRALRFGGDSEDLKLCGTFRFRPERRTAATEADTEDKRH
TDSHGKSHQKRNDIL*
AnnotationID:6776GeneID:6775
AnnotatorUID: diggins
Modification Date/Time: 2004-11-04 14:02:44
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
no data found via CDD Search
Genomic Context:
Comment:
ReferenceID:16527
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30634
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49777How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 4961992Stop: 4964199
Length: 2208
Start Codon: GTGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGTGCGTCCTTGCATGGCATGGCTTCCTGGCGGCGGTAGAGGGCTCAGTAGTTCAGGGTCAGGCTCATGGT
CAGGTTGCGCGGCTCGCCGGGGGCGACCCAGACGTTGTTATAGGAACGCTCGTAGTAGCGACGATCGAAGAG
GTTGTTGACGTTCACCCCGAGGGTCGCATTGCTCGCCAGCGGATAGTGCGCGAGCAGGTCGACGGTGGTGTA
GGCCGGCAGTTCGAAGCCGCTGTCGCTGCTGTCGCCGGCGCGCTCGCCGACATAGTTGACCGCCGCGCCGGC
GTCGGCGCCGTGCAGCCAGCCTTCGCGGAACTCGTAGACGCCCATCAGGCTGCCGCTGTGCTTCGGCACGTT
GAGCAGGCGGCTGCCACGGGCGATGTTCTCGTCCTTGGTCACTTCGGCGTCGATATAGGCGTAGGCGCCGAT
CAGCCGCAACTGCTCGGTGAGCTGGCCGCTGAACTGCAGGTCGAAGCCCTGGCTGCGCGCCTCGCCGGCGGT
CTGCTGGTAACCGGGATTGCTCGGGTCGGCGGTGAGCACGTTCTTCTTTTTCAGGTGGAACGCGGCGAGGGT
CATGCCCAGCCGGCCATCGAGCAGGTCGAGCTTCACCCCCGCCTCGTAGCCGCGCCCCTCCTCCGGGTCGAA
GGCCTTGCCGGCCATGTCGGTACCGCCGTTGGGCTTGAAGGATTTCGAGGCGTTGGCGAACAGGCCGACCTC
CGGGGTCGCCTGGTACAACACGCCGATGCGCGGGGTGGCGGCACGCTGGGTCTGCTGCGAGCTGGTGTCGCG
GAAGCGGCCATTGTTCAGGCGCGTGGCGTTCATGTCCTGGCGGTAGCGGTCGAAGCGCACGCCGAGCAGGCC
GCGCCATTTCTCGTTGAACTCGATCTGGTCCTGCAGGTTGAGGGCCATCGCGTCGACTTCCTCGTGGTTGCG
GTCGTCGCGTCCGAAGGGTGGTTTCGGCTGGCCGTAGACCGGCCGGCGGATGTCGATGGCATAGGGGTTGCG
CGACGGGATGCTACGCAGGATCAGTTCGTCGTTGTGGTAGCGCTCGTACTCCAGGCCCATCAGCAACTGGTG
GCGGATCGAGCCGGTATGGAGGTCGCCGAGCAGGTCGAGCTGGGTGATGCTGTCGTGCCACTCGAAGTCGCG
GTAGCGGTACTCCCGGCGCAGGGTGTAGCCGTCGGCGGCGAGGCTGGAGTTCTCCGAGGCGTAGCCGTCCAG
GTGGCCATGCTTGTAGTGGCTGGCCAGGCGCAGGCTCCACTGCTCGTTGAGGTGATGGCGCAGGGTGGCCTG
GAGGGTTTCGTTGTTGTTGTCGATCTTGCCGTCGTCCGGTTCGCCGAAGAACCGCGAGCGCGGCAGGCTGCC
CAGGTGGTTGTGCGGCGCCACGGTGCCGCGGTCGAAGACCTGGCGGTTGCGCACCACCTCGGCTTCCACCAG
CAACGAGGTGTCCGGGTCCAGTTGCCAGCTGAACGATGGCGCCACCAGCAGGCGCTGGCCGTCGGCGTAGTC
GCGGAAGCCCTTGCTGTCCTCCACCGCCAGGTTCATCCGGTAGAGCAGGTCGCCCTCTTCGTCCAGCGGCGT
GTTCAGGTCCAGGGTCGAGCGGTAGCGGTCCCAGCTGCCGGCGCTGGCATGCAAGCGGGCGAAGCGCTCGGC
CTGGGGCTTCTTGGTCACCAGGTTCACCGTGCCGCCGGGATCGCCGCGCCCGTACAGGCTGGAGGCCGGTCC
CTTGAGGATTTCCACGCGCTCGATGGTGGCGCTGTCCGGGGCGTTCATATAGCCGCGGTTGGCGCTGAAGCC
GTCGCGGTAGAACTCCGAAGTGGTGAAGCCACGGACGTTGTACTCGAACATCGTCAGGCCGCCGAAGTTGTT
CTGCCGCGAGACCCCGCCGGCGAAGTCCAGCGCCCGTTCGATACGAGCGCTGTCAAGGTCGTCGAGCACCTG
GCGCGGCACCACGCTGATGGCTTGCGGGATGTCCTCGATACGGGTGTCGGTGCGCGTCGCGCTGGCCGACCG
ATTGGCCCGGTAGCCCTGCACCGGGCCCTCCGCGCGCTCCGCTTCGGCGGTGACAGTGAGGACCTCAAGCTC
TGCGGGACTTTCCGTTTCCGCCCAGAGCGCCGGACTGCTGCAACCGAGGCCGACACCGAGGACAAGCGACAC
ACTGACTCTCATGGGAAATCGCACCAGAAAAGAAATGATATACTATAA