ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6768

TrivialName: PA14_63690

AnnotatorUID: danlee

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_63690

PAO1 Ortholog Locus:

Sequence Length: 1563

Protein Length: 520

Start: 5679644

Stop: 5678082

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAO58486.1| (AE016874) hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] Identities = 63/127 (49%), Positives = 81/127 (63%)

Sequence:

ATGGGACTGGCAGGCTCGCGAAGATCGTCGGCAGGCGCGGATCGCCTGCGTCCTGCTGGGCAGTTCGGCGCT
GTTCTTCGTCGCCTCCGGGGCGGTGATGACCGACATGGCCCTGGCCCTGGCCCTGGTCCTGACCATGCGCGG
CTTCTGGCTGGGCCTGCATGGCGCGGAGGGAATCCGGCGCCGCGAGGGCTGGCTGATGTTCCTCGGCCTCGG
CCTCGGGCTGCTGGCGAAAGGGCCGCTGACGCTGATCCTCGCCGGACTGCCGATCGGCCTGTGGGCCTTGCT
GGAGTGGCGCTGGCGCGCGCTCTGGCGGGGCCTGCCATGGATCCGCGGAAGCCTGCTGATGCTCCTGGTGGC
GGCGCCCTGGTACCTGCTGGCGGAGTTGAAGACGCCGGGCTTCCTCGAGTACTTCCTGCTCGGCGAGCATTG
GCAGCGCTTCGTCACCGCCGGCTGGGACGGCGACCGCTACGGCAATGCCCACGCCTATCCCTACGGCAGCGT
CTGGCTGTTCCTGCTGGCCGCCGCGTTTCCCTGGAGCCTCTGGTTGCCGCTGCTGCTCTGGCTGGGCTGGCG
CCAGCGCGGGGAGGTGGTCGATGGCGTCGCCTCGCGCAGGCGCTACTGGCTGTTCTGGGGACTGGCGCCGTG
CCTGTTCTTCACCTTCGCCGGCAACGTCCTCTGGACCTACGTGCTGCCCGGCCTGCCGGCCCTGGCGTTGCT
CGCCGCCGACCTGCTGCGCGCGCCGCTGGCGCGCAGCGCCTGGCTGCGGCGTGGCGGGCTGGCCTGCCTGGC
GCTGACGCCGTTGCTGTTCGCGCTGTTCCTCGGCTCCCTGCTGCTGGGCTCGCGCGCCGAGCAGAAGTCCAC
CGCCGCGCTGCTGGCCAGCGACGCCGGCTGGCGCGAGCGGCCGCTGGTGTTCTGGCCGAAGCGGCCGTACTC
GGCAGTGTTCTACAGCGGCGGGCGGGCACAACGGGCGGAGGACAGCGAACTGGCCGGCTGGTTGCGTCGCGA
CGCCCTGCTGGCGATCCGCTCGCGTTCGTTCGGCGCCTTGCCCGACGAGGTGCGCCAGCGCTTGCGCTGCCG
GCCGCCGGTGGGACAGTACCAGCTATGCCAGGGCGTGGCGCCGCCTGGCTGAGGCTACTTCGGCCGGTAGGC
GCAGTGGCCGGGACGCGGGCCGATGCGCGGGTGGTTGCGGCAGGTGTCCGGGCGGCGGGCATAGATGGTGCA
CAGGCGGGTCTTGCGGTCGAGGTACAGGCAGTCGCCGTTGGCCATGCGGGTGAGGGTGAAGATCTCGCGCTT
GTGGTTGAAGTGCTCGATCACGCCATCCTTTTCCAGTCGCTTGGCGATTCGCTTGGCCGGCTCCTCGCGCTC
GAACTCGTCGACCAGTCGCATGCGGATCAGGTCGTCGATGCGCACTTCCACCGGCAGCGTGCAGCAGGTCGC
GTTGCACTCGCCGCACAGGCCTTCGCGGTATTTCACCCAGGTATCCAGGCGGTCGGGGTCGGCGGCGGCGAG
CGGGATCTTCTTCATCGGCGGGCGGGGGCGGGGAAAACGGGCGCGCAATGA

Translation:

MGLAGSRRSSAGADRLRPAGQFGAVLRRLRGGDDRHGPGPGPGPDHARLLAGPAWRGGNPAPRGLADVPRPR
PRAAGERAADADPRRTADRPVGLAGVALARALAGPAMDPRKPADAPGGGALVPAGGVEDAGLPRVLPARRAL
AALRHRRLGRRPLRQCPRLSLRQRLAVPAGRRVSLEPLVAAAALAGLAPARGGGRWRRLAQALLAVLGTGAV
PVLHLRRQRPLDLRAARPAGPGVARRRPAARAAGAQRLAAAWRAGLPGADAVAVRAVPRLPAAGLARRAEVH
RRAAGQRRRLARAAAGVLAEAAVLGSVLQRRAGTTGGGQRTGRLVASRRPAGDPLAFVRRLARRGAPALALP
AAGGTVPAMPGRGAAWLRLLRPVGAVAGTRADARVVAAGVRAAGIDGAQAGLAVEVQAVAVGHAGEGEDLAL
VVEVLDHAILFQSLGDSLGRLLALELVDQSHADQVVDAHFHRQRAAGRVALAAQAFAVFHPGIQAVGVGGGE
RDLLHRRAGAGKTGAQ*

AnnotationID:6769 GeneID:6768

AnnotatorUID: diggins

Modification Date/Time: 2005-03-11 06:06:34

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:13268

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30620

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:6768

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

201713 gb|AAO58486.1| (AE016874) hypothetical protein PSPTO5059 [Pseudomonas syringae pv. tomato str. DC3000] 533 14.25 18.94 357 281.0

GC ORFID: `49770`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `4943324`	Stop: `4941762`
Length: `1563`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGGACTGGCAGGCTCGCGAAGATCGTCGGCAGGCGCGGATCGCCTGCGTCCTGCTGGGCAGTTCGGCGCT GTTCTTCGTCGCCTCCGGGGCGGTGATGACCGACATGGCCCTGGCCCTGGCCCTGGTCCTGACCATGCGCGG CTTCTGGCTGGGCCTGCATGGCGCGGAGGGAATCCGGCGCCGCGAGGGCTGGCTGATGTTCCTCGGCCTCGG CCTCGGGCTGCTGGCGAAAGGGCCGCTGACGCTGATCCTCGCCGGACTGCCGATCGGCCTGTGGGCCTTGCT GGAGTGGCGCTGGCGCGCGCTCTGGCGGGGCCTGCCATGGATCCGCGGAAGCCTGCTGATGCTCCTGGTGGC GGCGCCCTGGTACCTGCTGGCGGAGTTGAAGACGCCGGGCTTCCTCGAGTACTTCCTGCTCGGCGAGCATTG GCAGCGCTTCGTCACCGCCGGCTGGGACGGCGACCGCTACGGCAATGCCCACGCCTATCCCTACGGCAGCGT CTGGCTGTTCCTGCTGGCCGCCGCGTTTCCCTGGAGCCTCTGGTTGCCGCTGCTGCTCTGGCTGGGCTGGCG CCAGCGCGGGGAGGTGGTCGATGGCGTCGCCTCGCGCAGGCGCTACTGGCTGTTCTGGGGACTGGCGCCGTG CCTGTTCTTCACCTTCGCCGGCAACGTCCTCTGGACCTACGTGCTGCCCGGCCTGCCGGCCCTGGCGTTGCT CGCCGCCGACCTGCTGCGCGCGCCGCTGGCGCGCAGCGCCTGGCTGCGGCGTGGCGGGCTGGCCTGCCTGGC GCTGACGCCGTTGCTGTTCGCGCTGTTCCTCGGCTCCCTGCTGCTGGGCTCGCGCGCCGAGCAGAAGTCCAC CGCCGCGCTGCTGGCCAGCGACGCCGGCTGGCGCGAGCGGCCGCTGGTGTTCTGGCCGAAGCGGCCGTACTC GGCAGTGTTCTACAGCGGCGGGCGGGCACAACGGGCGGAGGACAGCGAACTGGCCGGCTGGTTGCGTCGCGA CGCCCTGCTGGCGATCCGCTCGCGTTCGTTCGGCGCCTTGCCCGACGAGGTGCGCCAGCGCTTGCGCTGCCG GCCGCCGGTGGGACAGTACCAGCTATGCCAGGGCGTGGCGCCGCCTGGCTGAGGCTACTTCGGCCGGTAGGC GCAGTGGCCGGGACGCGGGCCGATGCGCGGGTGGTTGCGGCAGGTGTCCGGGCGGCGGGCATAGATGGTGCA CAGGCGGGTCTTGCGGTCGAGGTACAGGCAGTCGCCGTTGGCCATGCGGGTGAGGGTGAAGATCTCGCGCTT GTGGTTGAAGTGCTCGATCACGCCATCCTTTTCCAGTCGCTTGGCGATTCGCTTGGCCGGCTCCTCGCGCTC GAACTCGTCGACCAGTCGCATGCGGATCAGGTCGTCGATGCGCACTTCCACCGGCAGCGTGCAGCAGGTCGC GTTGCACTCGCCGCACAGGCCTTCGCGGTATTTCACCCAGGTATCCAGGCGGTCGGGGTCGGCGGCGGCGAG CGGGATCTTCTTCATCGGCGGGCGGGGGCGGGGAAAACGGGCGCGCAATGA