ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6767

TrivialName: PA14_63670

AnnotatorUID: danlee

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_63670

PAO1 Ortholog Locus:

Sequence Length: 1383

Protein Length: 460

Start: 5678377

Stop: 5676995

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: dbj|BAC70262.1| (AP005031) putative translation initiation factor IF-2 [Streptomyces avermitilis MA-4680] Identities = 122/383 (31%), Positives = 136/383 (35%), Gaps = 71/383 (18%)

Sequence:

ATGCGGGTGAGGGTGAAGATCTCGCGCTTGTGGTTGAAGTGCTCGATCACGCCATCCTTTTCCAGTCGCTTG
GCGATTCGCTTGGCCGGCTCCTCGCGCTCGAACTCGTCGACCAGTCGCATGCGGATCAGGTCGTCGATGCGC
ACTTCCACCGGCAGCGTGCAGCAGGTCGCGTTGCACTCGCCGCACAGGCCTTCGCGGTATTTCACCCAGGTA
TCCAGGCGGTCGGGGTCGGCGGCGGCGAGCGGGATCTTCTTCATCGGCGGGCGGGGGCGGGGAAAACGGGCG
CGCAATGATAGTGGCTGCGCGCCCGTTGCGCTCGTCCGGGCGATGAGCGTCAGTGCCGTGGGTCCTCCCGCC
ATACCGGCCGGTCCTGCTCGTCCAGAGCCCAGTGCGCGGTGCCGGCGCGCAGGCGTACGCCGCCGACCCAGC
GTTCGGGGGCGCCGAGGTCGAGGCGGTAGCGCCGCCCGGCCAGGACCTCGCGGCCCGCAGCGGTCAGCGCCA
GCGGCTGGCGTTCCCAGGGCAGTTCCGGCGCCGGCGTGCGCAGCAGCGCACCGGGCTCTTCCAGCAGCGCGC
GGAGCAGGACGCGGAACATCAGGTCGCCGAGATAGGGCAGCGGCTCGCGCCGTGCGGTCAGCTCGGCGAAGA
CCTGGCCGGCGCTCGGCCGCTCGCCGTCGCGGACGATCTCCAGGGTCAGCCGTTCGCTCAGCGACAGGCCGT
CGCGCAGGGCCGGCAGTTCATGCAGTTGCCGACGCAGCGCCGGCCCCAGCAACGGTAGCGCCGGGGTTGGCG
CGGCGGCCAGTTGCGCCCAGCGCAGTGGCGCCGGATCGCGGTAGGCGTCCCAGGCCGCGCGGGCCAGCGCCA
GGGCTTCGGCGTCCAGCGGGCGACGCCGAGTCCATAGCCAGGCGAGCAGCTCAGGCGCCAGTTGGCCGATGC
CGACGAAGCGCTCGACGCCTGGCACGCGGTCGATCTCGATCAGTTCCAGATGCTCCGGCGGCGTCTGCATTC
CTGCCAGCACCCGGACCAGGAACAACTGGTCGTAGGCATCCGCCTCGCACCAGAGCGCCACCCGCGAGTATT
CGCCGAGCCGCTCGAGCCCGGCGTATTCCTGGCGCTGGCGGGCCTGGGCGTCGGCCGGGTCGAGGTCGAAGG
CGCGGCTCAGGTAGTCGCTGCGCAGGGCGAGGAACTCGGGCAACGGCAGGTTCGGCACCGGTCCCATGGTCA
GCGGGTCGGCGAACATCCGGAAGTCGCTGCGAAAGCCGGCGAGCTTCAGGCCGTGGGCGATGTCGTTGCCGC
AACGCAGGTGCAGGGTCGCGGCCTCATCGCCGCCGACCAGATCGGGGTGGCGGCTGGCGAAGGCGATGGCGT
CGACATGCGCCTTGA

Translation:

MRVRVKISRLWLKCSITPSFSSRLAIRLAGSSRSNSSTSRMRIRSSMRTSTGSVQQVALHSPHRPSRYFTQV
SRRSGSAAASGIFFIGGRGRGKRARNDSGCAPVALVRAMSVSAVGPPAIPAGPARPEPSARCRRAGVRRRPS
VRGRRGRGGSAARPGPRGPQRSAPAAGVPRAVPAPACAAAHRALPAARGAGRGTSGRRDRAAARAVRSARRR
PGRRSAARRRGRSPGSAVRSATGRRAGPAVHAVADAAPAPATVAPGLARRPVAPSAVAPDRGRRPRPRGPAP
GLRRPAGDAESIARRAAQAPVGRCRRSARRLARGRSRSVPDAPAASAFLPAPGPGTTGRRHPPRTRAPPASI
RRAARARRIPGAGGPGRRPGRGRRRGSGSRCAGRGTRATAGSAPVPWSAGRRTSGSRCESRRASGRGRCRCR
NAGAGSRPHRRRPDRGGGWRRRWRRHAP*

AnnotationID:6768 GeneID:6767

AnnotatorUID: diggins

Modification Date/Time: 2004-11-08 07:07:20

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:13266

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30618

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:35234

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6767_cdd.html

URL:

GC ORFID: `49769`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `4942057`	Stop: `4940675`
Length: `1383`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCGGGTGAGGGTGAAGATCTCGCGCTTGTGGTTGAAGTGCTCGATCACGCCATCCTTTTCCAGTCGCTTG GCGATTCGCTTGGCCGGCTCCTCGCGCTCGAACTCGTCGACCAGTCGCATGCGGATCAGGTCGTCGATGCGC ACTTCCACCGGCAGCGTGCAGCAGGTCGCGTTGCACTCGCCGCACAGGCCTTCGCGGTATTTCACCCAGGTA TCCAGGCGGTCGGGGTCGGCGGCGGCGAGCGGGATCTTCTTCATCGGCGGGCGGGGGCGGGGAAAACGGGCG CGCAATGATAGTGGCTGCGCGCCCGTTGCGCTCGTCCGGGCGATGAGCGTCAGTGCCGTGGGTCCTCCCGCC ATACCGGCCGGTCCTGCTCGTCCAGAGCCCAGTGCGCGGTGCCGGCGCGCAGGCGTACGCCGCCGACCCAGC GTTCGGGGGCGCCGAGGTCGAGGCGGTAGCGCCGCCCGGCCAGGACCTCGCGGCCCGCAGCGGTCAGCGCCA GCGGCTGGCGTTCCCAGGGCAGTTCCGGCGCCGGCGTGCGCAGCAGCGCACCGGGCTCTTCCAGCAGCGCGC GGAGCAGGACGCGGAACATCAGGTCGCCGAGATAGGGCAGCGGCTCGCGCCGTGCGGTCAGCTCGGCGAAGA CCTGGCCGGCGCTCGGCCGCTCGCCGTCGCGGACGATCTCCAGGGTCAGCCGTTCGCTCAGCGACAGGCCGT CGCGCAGGGCCGGCAGTTCATGCAGTTGCCGACGCAGCGCCGGCCCCAGCAACGGTAGCGCCGGGGTTGGCG CGGCGGCCAGTTGCGCCCAGCGCAGTGGCGCCGGATCGCGGTAGGCGTCCCAGGCCGCGCGGGCCAGCGCCA GGGCTTCGGCGTCCAGCGGGCGACGCCGAGTCCATAGCCAGGCGAGCAGCTCAGGCGCCAGTTGGCCGATGC CGACGAAGCGCTCGACGCCTGGCACGCGGTCGATCTCGATCAGTTCCAGATGCTCCGGCGGCGTCTGCATTC CTGCCAGCACCCGGACCAGGAACAACTGGTCGTAGGCATCCGCCTCGCACCAGAGCGCCACCCGCGAGTATT CGCCGAGCCGCTCGAGCCCGGCGTATTCCTGGCGCTGGCGGGCCTGGGCGTCGGCCGGGTCGAGGTCGAAGG CGCGGCTCAGGTAGTCGCTGCGCAGGGCGAGGAACTCGGGCAACGGCAGGTTCGGCACCGGTCCCATGGTCA GCGGGTCGGCGAACATCCGGAAGTCGCTGCGAAAGCCGGCGAGCTTCAGGCCGTGGGCGATGTCGTTGCCGC AACGCAGGTGCAGGGTCGCGGCCTCATCGCCGCCGACCAGATCGGGGTGGCGGCTGGCGAAGGCGATGGCGT CGACATGCGCCTTGA