ViewGene

Locus Name:
GeneID:
Location:

GeneID:6764
TrivialName: PA14_63610
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63610
PAO1 Ortholog Locus:
Sequence Length:591
Protein Length:196
Start: 5672348
Stop: 5671758
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Inactivated 2/01/06. PA14_63610(GeneID 6764) and PA14_63590 (GeneID 6763) replaced by PA14_63605 (GeneID 7382). Homology: gb|AAN80363.1|AE016760_222 (AE016760) Formate dehydrogenase, nitrate-inducible, major subunit [Escherichia coli CFT073]
Identities = 132/196 (67%), Positives = 156/196 (79%), Gaps = 1/196 (0%)
Sequence:
ATGGATATGAACCGTCGGCAATTCTTCAAGGTCTGCGGTATAGGCCTTGGAGGATCGAGCCTTGCGGCGCTC
GGGATGGCCCCCACGGAGGCCTTCGCCGACCAGGTCCGCCACTTCAAGCTGGCGCACACGGTCGAGACCCGC
AACACCTGTACCTACTGTTCGGTCGGTTGCGGCCTGATCATGTACAGCCAGGGCGACGGCGCCAAGAACGTC
GCGCAGAACATCATCCATATCGAGGGCGACGCCGACCATCCGGTCAACCGCGGCACCCTCTGCCCGAAAGGC
GCCGGCCTGCTGGACTACATCCACAGCCCGAACCGCCTGAAGTATCCGGAAGTGCGCGAGGCCGGCTCCAGC
GAGTGGAAGCGCATCGAGTGGGACGAAGCCCTCGAGCGCATCGCCAAGCTGATGAAGGAAGACCGCGATGCC
AACTTCGTCGAGAAGAACGAGCAGGGCCAGACCGTCAACCGCTGGTTGACCACCGGCTTCCTCGCCGCGTCC
GCCTCGTCCAACGAGGCCGGCTACATCACCCACAAGGTGATGCGCTCCCTCGGCATCCTGGGATTCGACAAC
CAGGCGCGTGTCTGA
Translation:
MDMNRRQFFKVCGIGLGGSSLAALGMAPTEAFADQVRHFKLAHTVETRNTCTYCSVGCGLIMYSQGDGAKNV
AQNIIHIEGDADHPVNRGTLCPKGAGLLDYIHSPNRLKYPEVREAGSSEWKRIEWDEALERIAKLMKEDRDA
NFVEKNEQGQTVNRWLTTGFLAASASSNEAGYITHKVMRSLGILGFDNQARV*
AnnotationID:6765GeneID:6764
AnnotatorUID: danlee
Modification Date/Time: 2006-02-01 18:06:52
Gene Name:
Confidence Code:4
GeneProduct:putative formae dehydrogenase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04879
Secondary Functional Category(ies):
EC Number:1.2.1.2
Status:INACTIVE
Pathway:
Homology:
>gb|AAN80363.1|AE016760_222 (AE016760) Formate dehydrogenase, nitrate-inducible, major subunit
           [Escherichia coli CFT073]
          Length = 1015

 Score =  280 bits (716), Expect = 4e-75
 Identities = 132/196 (67%), Positives = 156/196 (79%), Gaps = 1/196 (0%)

>gb|AAP17209.1| (AE016984) formate dehydrogenase-N, nitrate-inducible, alpha
           subunit [Shigella flexneri 2a str. 2457T]
          Length = 1015

 Score =  278 bits (712), Expect = 1e-74
 Identities = 131/196 (66%), Positives = 156/196 (79%), Gaps = 1/196 (0%)

>gb|AAL20488.1| (AE008768) putative molybdopterin oxidoreductases [Salmonella
           typhimurium LT2]
          Length = 1015

 Score =  278 bits (710), Expect = 2e-74
 Identities = 131/196 (66%), Positives = 155/196 (79%), Gaps = 1/196 (0%)
Structural Features:
pfam04879, Molybdop_Fe4S4, Molybdopterin oxidoreductase Fe4S4 domain.
CD-Length = 55 residues,  96.4% aligned
Score = 67.6 bits (165), Expect = 9e-13
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Genomic Context:
Comment:
Inactivated 2/01/06.  PA14_63610(GeneID 6764) and PA14_63590 (GeneID 6763) 
replaced by PA14_63605 (GeneID 7382).
ReferenceID:13260
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30612
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35237
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:6764_cdd.html
URL:
ReferenceID:35990
Author/Investigator(s): Plunkett G 3rd, Burland V, Daniels DL, Blattner FR.
Title: Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes.
PubMed: 8346018
MedLine:
Source:
Nucleic Acids Res. 1993 Jul 25;21(15):3391-8.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8346018
Homologs By Global Alignment
Gene ID:6764

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
201687 gb|AAP76497.1| (AY240957) Uvs012 [uncultured bacterium] 207 81.15 87.92 11 909.0
201707 gb|AAK02493.1| (AE006076) FdxG [Pasteurella multocida] 196 63.77 78.57 1 688.0
201708 emb|CAA60887.1| (X87583) aerobic formate-dehydrogenase [Escherichia coli] 196 63.26 77.55 6 685.0
201688 gb|AAN80363.1|AE016760_222 (AE016760) Formate dehydrogenase, nitrate-inducible, major subunit [Escherichia coli CFT073] 1016 12.99 15.35 821 718.0
201689 gb|AAG56295.1|AE005358_3 (AE005358) formate dehydrogenase-N, nitrate-inducible, alpha subunit [Escherichia coli] [Escherichia coli O157:H7 EDL933] 1016 12.99 15.35 821 718.0
GC ORFID: 49766How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 4936028Stop: 4935438
Length: 591
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4812 translation of PA4812Homolog Bit Score 404.0
Other Homologs: t_PA4812 translation of PA4812 (BLASTP 404)
GC ORF Sequence
ATGGATATGAACCGTCGGCAATTCTTCAAGGTCTGCGGTATAGGCCTTGGAGGATCGAGCCTTGCGGCGCTC
GGGATGGCCCCCACGGAGGCCTTCGCCGACCAGGTCCGCCACTTCAAGCTGGCGCACACGGTCGAGACCCGC
AACACCTGTACCTACTGTTCGGTCGGTTGCGGCCTGATCATGTACAGCCAGGGCGACGGCGCCAAGAACGTC
GCGCAGAACATCATCCATATCGAGGGCGACGCCGACCATCCGGTCAACCGCGGCACCCTCTGCCCGAAAGGC
GCCGGCCTGCTGGACTACATCCACAGCCCGAACCGCCTGAAGTATCCGGAAGTGCGCGAGGCCGGCTCCAGC
GAGTGGAAGCGCATCGAGTGGGACGAAGCCCTCGAGCGCATCGCCAAGCTGATGAAGGAAGACCGCGATGCC
AACTTCGTCGAGAAGAACGAGCAGGGCCAGACCGTCAACCGCTGGTTGACCACCGGCTTCCTCGCCGCGTCC
GCCTCGTCCAACGAGGCCGGCTACATCACCCACAAGGTGATGCGCTCCCTCGGCATCCTGGGATTCGACAAC
CAGGCGCGTGTCTGA