ViewGene
Locus Name:
GeneID:
Location:

GeneID:6763
TrivialName: PA14_63590
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63590
PAO1 Ortholog Locus:
Sequence Length:2442
Protein Length:813
Start: 5671709
Stop: 5669268
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Inactivated 2/01/06. PA14_63610(GeneID 6764) and PA14_63590 (GeneID 6763) replaced by PA14_63605 (GeneID 7382). Homology: gb|AAP18795.1| (AE016990) formate dehydrogenase-O, major subunit [Shigella flexneri 2a str. 2457T]
Identities = 555/812 (68%), Positives = 652/812 (80%), Gaps = 9/812 (1%)
Sequence:
ATGACCAACCACTGGACCGACATCAAGAATGCCGATCTGGTGCTGATCATGGGCGGCAACGCCGCCGAAGCC
CACCCGTGCGGATTCAAATGGGTCACCGAAGCCAAGGCGCACAACAAGGCGCGGCTGCTGGTGGTCGATCCG
CGTTTCACCCGTTCCGCCTCGGTCGCCGACTACTACGCGCCGATCCGGACCGGCACCGACATCGCCTTCCTC
GGCGGCCTGATCAACTACCTGCTGGAAAACGACAAGATCCAGCACGAATACGTGCGCAACTACACCGATGTC
TCGTTCATCGTGAAGGAAGGCTTCAGCTTCGAGGACGGCCTGTTCAACGGCTACGACGCCGAGAAGCGGACC
TACCCGGACAAGTCCTCCTGGGGCTACGAGATCGGTGAGGACGGCTATGCCAAGGTCGACCCGACCCTGACT
CACCCGCGCTGCGTGTTCAACCTGCTCAAGCAGCACTACAGCCGCTACACCCCGGACGTGGTGAGCAACATC
TGCGGTACGCCGAAGGACATGATGCTCAAGGTCTGGGCGGAAATCGCCGAGACCTCCAAGCCGGGCAAGGTC
ATGACCATCATGTACGCCCTGGGCTGGACCCAGCACTCGGTAGGCGCGCAGATGATCCGCACCGGCGCGATG
GTCCAGCTGCTGCTGGGCAACATCGGCATGCCCGGCGGCGGCATGAACGCCCTGCGCGGCCACTCCAACATC
CAGGGCCTGACCGACCTCGGCCTGCTGTCCAACTCGCTGCCGGGCTACCTGACCCTGGCGATGGACGCCGAG
CAGGACTACGACGCCTACATCGCCAAGCGCACGGCCAAGCCGCTGCGCCCGGGACAACTGTCCTACTGGCAG
AACTACGGCAAGTTCCATGTCAGCCTGATGAAGGCCTGGTTCGGCAAGTCGGCGACCAAGGAAAACAACTGG
TGCTACGACTGGCTGCCCAAGCTCGACATGCCGGGCGCCGGCTACGACGTGCTGCGCTACTTCGACATGATG
TACCAGGGCAAGGTCAACGGATACTTCTGCCAGGGCTTCAACCCCATCGCCTCGTTCCCTAACAAGGCCAAG
GTCGGCGCTGCGCTGGCGCGCCTGAAGTGGATGGTGGTGATGGACCCGCTGGTGACCGAGACCTCGGAGTTC
TGGCGCAACGTCGGCGAGTACAACGACGTCGACACCGCCAGCATCAAGACCACGGTGTTCCGCCTGCCCACC
TCCTGCTTCGCCGAGGAAGACGGCTCGATCGTCAACAGCGGCCGCTGGTTGCAGTGGCACTGGAAGGGCGCC
GAGCCGCCGGGCCAGGCGCGTCCGGACATCGCCATCATGGCCGGGCTGTTCCACCGCCTGCGCGAGATGTAC
CGCAAGGACGGCGGGGCCTTCCCCGACCCGATCCTCGGCCTCGACTGGTCCTACCTCAAGCCCGACGAACCG
GGCCCGGACGAACTGGCCCGGGAGTTCAACGGCAAGGCCCTGAGCGACCTGGTCGACCCGGCCAACGGCATG
ATCCTGGCCAAGGCCGGCGAGCAGTTGCCGGGCTTCGCCCTGCTGCGCGACGACGGCAGCACGGCGAGCGGC
TGCTGGATCTTCGCCGGCTCCTGGACCCAGCAGGGCAACCAGATGGGCCGCCGCGACAACAGCGACCCCTAC
GGCATGGGCCAGACCCTCGGCTGGGCCTGGGCCTGGCCGGCGAACCGGCGGATTCTCTACAACCGCGCCTCG
GCCGACGTCAGCGGCAAGCCGTGGGACCCGGAGAAGAAGCGCCTGGTGTGGTGGAACGGCAAGTCCTGGGGC
GGCACCGACGTGCCCGACTACAAGGCCGACGTACCGCCGGAAGCCGGGATGAACCCGTTCATCATGAACCCC
GAAGGGGTGGCCCGCCTGTTCGCCGTCGACAAGATGGCCGAAGGCCCGTTCCCCGAGCACTACGAGCCGTTC
GAGACGCCGATCGGGGTGAACCCCTTGCACCGCGACAACCGCAAGGCGATCAGCAACCCGGCGGCACGGGTG
TTCAAGAACGACATGGAACTGTTCGGCACGGCCGACGAGTTCCCCTACGCAGCGACCACCTACCGGCTCACC
GAGCACTTCCACTACTGGACCAAGCACTGCCGGCTGAATGCGATCACCCAGCCCGAGCAGTTCGTCGAGATC
GGCGAGGCGCTGGCCAAGGAGCTGGGCATCAATGCCGGCGACAAGGTCAAGGTCTCCTCCAACCGCGGCTAC
ATCAAGGCGGTGGCGGTGGTGACCAAGCGCATCCGCCCGCTGCAGGTGGACGGCAAGACCGTGCACCACGTC
GGCATCCCGATCCACTGGGGCTTCGCCGGCATGGCGCGCAACGGCTTCCTGGCCAACACCCTGACCCCCTTC
GTGGGCGACGGGAATACCCAGACGCCGGAGTTCAAGTCGTTCCTGGTCAACGTGGAAAAGGCGTGA
Translation:
MTNHWTDIKNADLVLIMGGNAAEAHPCGFKWVTEAKAHNKARLLVVDPRFTRSASVADYYAPIRTGTDIAFL
GGLINYLLENDKIQHEYVRNYTDVSFIVKEGFSFEDGLFNGYDAEKRTYPDKSSWGYEIGEDGYAKVDPTLT
HPRCVFNLLKQHYSRYTPDVVSNICGTPKDMMLKVWAEIAETSKPGKVMTIMYALGWTQHSVGAQMIRTGAM
VQLLLGNIGMPGGGMNALRGHSNIQGLTDLGLLSNSLPGYLTLAMDAEQDYDAYIAKRTAKPLRPGQLSYWQ
NYGKFHVSLMKAWFGKSATKENNWCYDWLPKLDMPGAGYDVLRYFDMMYQGKVNGYFCQGFNPIASFPNKAK
VGAALARLKWMVVMDPLVTETSEFWRNVGEYNDVDTASIKTTVFRLPTSCFAEEDGSIVNSGRWLQWHWKGA
EPPGQARPDIAIMAGLFHRLREMYRKDGGAFPDPILGLDWSYLKPDEPGPDELAREFNGKALSDLVDPANGM
ILAKAGEQLPGFALLRDDGSTASGCWIFAGSWTQQGNQMGRRDNSDPYGMGQTLGWAWAWPANRRILYNRAS
ADVSGKPWDPEKKRLVWWNGKSWGGTDVPDYKADVPPEAGMNPFIMNPEGVARLFAVDKMAEGPFPEHYEPF
ETPIGVNPLHRDNRKAISNPAARVFKNDMELFGTADEFPYAATTYRLTEHFHYWTKHCRLNAITQPEQFVEI
GEALAKELGINAGDKVKVSSNRGYIKAVAVVTKRIRPLQVDGKTVHHVGIPIHWGFAGMARNGFLANTLTPF
VGDGNTQTPEFKSFLVNVEKA*
AnnotationID:6764GeneID:6763
AnnotatorUID: danlee
Modification Date/Time: 2006-02-01 18:06:27
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:putative formate dehydrogenase-O
Functional Category Confidence Code:5
COGs:pfam01568
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAP18795.1| (AE016990) formate dehydrogenase-O, major subunit [Shigella flexneri
            2a str. 2457T]
          Length = 1016

 Score = 1173 bits (3035), Expect = 0.0
 Identities = 555/812 (68%), Positives = 652/812 (80%), Gaps = 9/812 (1%)

>gb|AAD13456.1| (AE000464) formate dehydrogenase-O, major subunit [Escherichia coli
            K12]
          Length = 1016

 Score = 1171 bits (3029), Expect = 0.0
 Identities = 554/812 (68%), Positives = 651/812 (80%), Gaps = 9/812 (1%)

>gb|AAL22876.1| (AE008888) formate dehydrogenase [Salmonella typhimurium LT2]
          Length = 1016

 Score = 1169 bits (3023), Expect = 0.0
 Identities = 555/812 (68%), Positives = 650/812 (80%), Gaps = 9/812 (1%)








 
Structural Features:
pfam01568, Molydop_binding, Molydopterin dinucleotide binding domain.
CD-Length = 111 residues,  97.3% aligned
Score = 93.8 bits (233), Expect = 7e-20
Identities = 50/120 (41%), Positives = 58/120 (48%), Gaps = 15/120 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:13258




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30610




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35238




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6763_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6763
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
201681
                           gb|AAK02492.1|
                           (AE006076) FdxG [Pasteurella multocida]
                           819
                           58.73
                           73.87
                           16
                           2614.0
     

     
     
201682
                           gb|AAP76498.1|
                           (AY240957) Uvs013 [uncultured bacterium]
                           838
                           54.53
                           63.00
                           182
                           2450.0
     

     
     
201660
                           gb|AAP18795.1|
                           (AE016990) formate dehydrogenase-O, major subunit [Shigella flexneri 2a str. 2457T]
                           1025
                           54.14
                           63.60
                           221
                           3047.0
     

     
     
201667
                           emb|CAD09588.1|
                           (AL627279) formate dehydrogenase-O, major subunit [Salmonella enterica subsp. enterica serovar Typhi]
                           1025
                           54.14
                           63.41
                           221
                           3035.0
     

     
     
201666
                           gb|AAO71086.1|
                           (AE016846) formate dehydrogenase-O major subunit [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           1025
                           54.14
                           63.41
                           221
                           3035.0
     

     






      

          
GC ORFID: 49765How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4935389Stop: 4932948

          
Length: 2442


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4812 translation of PA4812Homolog Bit Score 1711.0

          
Other Homologs:  t_PA4812 translation of PA4812 (BLASTP 1711)

          
GC ORF Sequence

           
ATGACCAACCACTGGACCGACATCAAGAATGCCGATCTGGTGCTGATCATGGGCGGCAACGCCGCCGAAGCC 
CACCCGTGCGGATTCAAATGGGTCACCGAAGCCAAGGCGCACAACAAGGCGCGGCTGCTGGTGGTCGATCCG 
CGTTTCACCCGTTCCGCCTCGGTCGCCGACTACTACGCGCCGATCCGGACCGGCACCGACATCGCCTTCCTC 
GGCGGCCTGATCAACTACCTGCTGGAAAACGACAAGATCCAGCACGAATACGTGCGCAACTACACCGATGTC 
TCGTTCATCGTGAAGGAAGGCTTCAGCTTCGAGGACGGCCTGTTCAACGGCTACGACGCCGAGAAGCGGACC 
TACCCGGACAAGTCCTCCTGGGGCTACGAGATCGGTGAGGACGGCTATGCCAAGGTCGACCCGACCCTGACT 
CACCCGCGCTGCGTGTTCAACCTGCTCAAGCAGCACTACAGCCGCTACACCCCGGACGTGGTGAGCAACATC 
TGCGGTACGCCGAAGGACATGATGCTCAAGGTCTGGGCGGAAATCGCCGAGACCTCCAAGCCGGGCAAGGTC 
ATGACCATCATGTACGCCCTGGGCTGGACCCAGCACTCGGTAGGCGCGCAGATGATCCGCACCGGCGCGATG 
GTCCAGCTGCTGCTGGGCAACATCGGCATGCCCGGCGGCGGCATGAACGCCCTGCGCGGCCACTCCAACATC 
CAGGGCCTGACCGACCTCGGCCTGCTGTCCAACTCGCTGCCGGGCTACCTGACCCTGGCGATGGACGCCGAG 
CAGGACTACGACGCCTACATCGCCAAGCGCACGGCCAAGCCGCTGCGCCCGGGACAACTGTCCTACTGGCAG 
AACTACGGCAAGTTCCATGTCAGCCTGATGAAGGCCTGGTTCGGCAAGTCGGCGACCAAGGAAAACAACTGG 
TGCTACGACTGGCTGCCCAAGCTCGACATGCCGGGCGCCGGCTACGACGTGCTGCGCTACTTCGACATGATG 
TACCAGGGCAAGGTCAACGGATACTTCTGCCAGGGCTTCAACCCCATCGCCTCGTTCCCTAACAAGGCCAAG 
GTCGGCGCTGCGCTGGCGCGCCTGAAGTGGATGGTGGTGATGGACCCGCTGGTGACCGAGACCTCGGAGTTC 
TGGCGCAACGTCGGCGAGTACAACGACGTCGACACCGCCAGCATCAAGACCACGGTGTTCCGCCTGCCCACC 
TCCTGCTTCGCCGAGGAAGACGGCTCGATCGTCAACAGCGGCCGCTGGTTGCAGTGGCACTGGAAGGGCGCC 
GAGCCGCCGGGCCAGGCGCGTCCGGACATCGCCATCATGGCCGGGCTGTTCCACCGCCTGCGCGAGATGTAC 
CGCAAGGACGGCGGGGCCTTCCCCGACCCGATCCTCGGCCTCGACTGGTCCTACCTCAAGCCCGACGAACCG 
GGCCCGGACGAACTGGCCCGGGAGTTCAACGGCAAGGCCCTGAGCGACCTGGTCGACCCGGCCAACGGCATG 
ATCCTGGCCAAGGCCGGCGAGCAGTTGCCGGGCTTCGCCCTGCTGCGCGACGACGGCAGCACGGCGAGCGGC 
TGCTGGATCTTCGCCGGCTCCTGGACCCAGCAGGGCAACCAGATGGGCCGCCGCGACAACAGCGACCCCTAC 
GGCATGGGCCAGACCCTCGGCTGGGCCTGGGCCTGGCCGGCGAACCGGCGGATTCTCTACAACCGCGCCTCG 
GCCGACGTCAGCGGCAAGCCGTGGGACCCGGAGAAGAAGCGCCTGGTGTGGTGGAACGGCAAGTCCTGGGGC 
GGCACCGACGTGCCCGACTACAAGGCCGACGTACCGCCGGAAGCCGGGATGAACCCGTTCATCATGAACCCC 
GAAGGGGTGGCCCGCCTGTTCGCCGTCGACAAGATGGCCGAAGGCCCGTTCCCCGAGCACTACGAGCCGTTC 
GAGACGCCGATCGGGGTGAACCCCTTGCACCGCGACAACCGCAAGGCGATCAGCAACCCGGCGGCACGGGTG 
TTCAAGAACGACATGGAACTGTTCGGCACGGCCGACGAGTTCCCCTACGCAGCGACCACCTACCGGCTCACC 
GAGCACTTCCACTACTGGACCAAGCACTGCCGGCTGAATGCGATCACCCAGCCCGAGCAGTTCGTCGAGATC 
GGCGAGGCGCTGGCCAAGGAGCTGGGCATCAATGCCGGCGACAAGGTCAAGGTCTCCTCCAACCGCGGCTAC 
ATCAAGGCGGTGGCGGTGGTGACCAAGCGCATCCGCCCGCTGCAGGTGGACGGCAAGACCGTGCACCACGTC 
GGCATCCCGATCCACTGGGGCTTCGCCGGCATGGCGCGCAACGGCTTCCTGGCCAACACCCTGACCCCCTTC 
GTGGGCGACGGGAATACCCAGACGCCGGAGTTCAAGTCGTTCCTGGTCAACGTGGAAAAGGCGTGA