ViewGene
Locus Name:
GeneID:
Location:

GeneID:6762
TrivialName: PA14_63560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63560
PAO1 Ortholog Locus:
Sequence Length:816
Protein Length:271
Start: 5666681
Stop: 5667496
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD93305.1| (BX248335) CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis subsp. bovis AF2122/97]
Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 24/130 (18%)
Sequence:
GTGGCGGTCGAACTCCAGGTAGAACTGCTTCAGGTAGCCCTGGCAACTGGGGCAGGTCTCGGCGCGCAGCAC
GGCTTTTTCCGCCGGCTGCCCGTCATGCTCCAGGGACAGGTAGGCCAGGTGCTTGCTTTCCTCGCAGTGGCT
GCACTTGATTCGCACGTAGTGCCATTCGCAGGCGCACAGCGAGCAGCTCAGGTAGCGCAGGCCGGTTTCCTT
GCCGCCCTGGCGGATCATCCCGGCCATCGGCGGCGAGCCGCAGGCGGGGCACAGGGTCCGGCTCTCGGTCTC
GACCACCGCGCCCTCCTCCAGTCCCAGCAGCCAATGGCTCCAGGCTACCTGCAGGGCGGCGCCGAGGAACGG
CACCAGGGCCGCCGGCAGGAGGTCGAACTGACCGCTGAGCAAGGCGATGGCCCAGGCCTTGCGCTGGCCTTC
GTCGGCTTCGCGCAATTGTTCGAGTGCCGCGCCGACGGCGGCGTTGGCCGGTGCCGGGTAGCCCGCGAGCAG
GGCATCCAGCCAGGGCAGCCAGGCGCCTTCGCGCACCAGCAGGTCGTAGGCCAGCGGCGGCATGCCGTGCTC
GCGGCTCTTGCGCAGGCGCTCGGGGTCGAGCGGGGCCAGGGCCGGCGGGTTGTCCAGCAGCGCCTGCTGGAG
CCGGCAGAGACCGGCGACCAGCCGCAGGTAGTCGCCCATCGGGTGCCCCTCGGCCAGTTGCAGCAGACGCTC
GCCGCGGCGGGCGAACAGGTCGCGCGACGGCTGGTGCAGGTGCGGGGGAATGTTGGCGGCGGCTTCGATCTG
CCCCGGCTGAAGAATGGTGCGTGA
Translation:
MAVELQVELLQVALATGAGLGAQHGFFRRLPVMLQGQVGQVLAFLAVAALDSHVVPFAGAQRAAQVAQAGFL
AALADHPGHRRRAAGGAQGPALGLDHRALLQSQQPMAPGYLQGGAEERHQGRRQEVELTAEQGDGPGLALAF
VGFAQLFECRADGGVGRCRVAREQGIQPGQPGAFAHQQVVGQRRHAVLAALAQALGVERGQGRRVVQQRLLE
PAETGDQPQVVAHRVPLGQLQQTLAAAGEQVARRLVQVRGNVGGGFDLPRLKNGA*
AnnotationID:6763GeneID:6762
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 06:06:09
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:16517




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30608




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49764How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4930361Stop: 4931176

          
Length: 816


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGGCGGTCGAACTCCAGGTAGAACTGCTTCAGGTAGCCCTGGCAACTGGGGCAGGTCTCGGCGCGCAGCAC 
GGCTTTTTCCGCCGGCTGCCCGTCATGCTCCAGGGACAGGTAGGCCAGGTGCTTGCTTTCCTCGCAGTGGCT 
GCACTTGATTCGCACGTAGTGCCATTCGCAGGCGCACAGCGAGCAGCTCAGGTAGCGCAGGCCGGTTTCCTT 
GCCGCCCTGGCGGATCATCCCGGCCATCGGCGGCGAGCCGCAGGCGGGGCACAGGGTCCGGCTCTCGGTCTC 
GACCACCGCGCCCTCCTCCAGTCCCAGCAGCCAATGGCTCCAGGCTACCTGCAGGGCGGCGCCGAGGAACGG 
CACCAGGGCCGCCGGCAGGAGGTCGAACTGACCGCTGAGCAAGGCGATGGCCCAGGCCTTGCGCTGGCCTTC 
GTCGGCTTCGCGCAATTGTTCGAGTGCCGCGCCGACGGCGGCGTTGGCCGGTGCCGGGTAGCCCGCGAGCAG 
GGCATCCAGCCAGGGCAGCCAGGCGCCTTCGCGCACCAGCAGGTCGTAGGCCAGCGGCGGCATGCCGTGCTC 
GCGGCTCTTGCGCAGGCGCTCGGGGTCGAGCGGGGCCAGGGCCGGCGGGTTGTCCAGCAGCGCCTGCTGGAG 
CCGGCAGAGACCGGCGACCAGCCGCAGGTAGTCGCCCATCGGGTGCCCCTCGGCCAGTTGCAGCAGACGCTC 
GCCGCGGCGGGCGAACAGGTCGCGCGACGGCTGGTGCAGGTGCGGGGGAATGTTGGCGGCGGCTTCGATCTG 
CCCCGGCTGAAGAATGGTGCGTGA