ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6757

TrivialName: PA14_63400

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_63400

PAO1 Ortholog Locus:

Sequence Length: 1731

Protein Length: 576

Start: 5655071

Stop: 5656801

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 56/185 (30%), Positives = 65/185 (35%), Gaps = 47/185 (25%)

Sequence:

GTGCGAGCACGGCTTCCACCAACCTCTCGATCACCTCCCCCACCCTCCCCGGCTCGCCAACCTCCACCCAGC
GCAAATGCGCGAACCGCGGATCCTCGCGCAGGCCGGTGTATTTGCGGCGGTTGCCTGCGAAGGTGGTCCATG
ACCAGAGCAGGATCGAATCCCTGGAGCAGAACGCCATCCGCAGCGATTCACGGTTGCCGTGGGACAGGCGGG
TGCGCAGCAGGCCCCGGGCCAGGGTGCGGCGAAGGACCCGGGAGAACACCGTCCAGCGCCCGAAATTCAGCC
ATACCACATGGGTGGCGCGGCCCCAGAGCAACTCGCGGACGGCGCTGTAGTTGCCGTCGGCGACCCAGCGCG
GCGCCGTCGTCGCCCGCTCCACTGCGTGCTCGAAGCGTTCGTGGGGCACGGCTTGCCAGCCGGGGCCCCAGT
AGAGTCGGTCGAGTTCGACATGCGTACAACCCAGCCTGGCGGCCAGCGCGGCGGAGAAGGTCGACTTCCCGG
CCCCGCTGGTGCCGACCACCACCACACGCAGCGGCGCGCCTCGCCCGGCCTCGACGCAGGTCATGCCTTGAC
CGCGACCAGCGTGTAGCACATCGGGATCGCCAGCGGTCCGTCCTCGTAGAGGTCGTAGAGTTCCTCGCGGTT
CGAGTGCGGGTACTCCTTGAAGTGACTCAGGCGCAGGCCGGCGCCGAGCAGCCCGCCGAGGATGTCGCCGAG
CGGGTGGACGTACCAGTAGCTGGCGATGCCGGTATCGCTGCCGCTGCCTTCGTAGACGATGGCCTCCCGGGA
TACGTGGGGCGTGTCGGTGAAGTAGTCGTTGCGCAGTTCGAACGGTCGCTCCGACTCGGGTTCGAGCATCTC
CAGGAACGGGTGGGTCTCATAGATCGCCAATTGCCCGCCCGGCTTCAGCAGGCCGCTCACCGAGGCGAAGAA
GCGCGCGATGTCGGGCATCCAGTTGAGCACACCGATGGTGATCAGCAGCAGGTCGAACTGACCGTTCAGCTC
GGCCGGCAGCTCGTAGGCATTGGCTTCGACGAAACGCGGCTGATGCGGCGAGCGCTCGGCCAGTTGCCGCGC
CTGGGCGAGGAAGGCGGCGGACTGGTCGATCCCCACCGCCCGCGCGACGCCGAAGGCGTACAGCGAAAGCAC
TTCCCGGCCGTTGTTGCAGCCGACCTGGACCGCCGCCTTGCCGGCCAGGTCCAGATTGCGCAGCACGCCAGC
CAGGGTCTCGTCCAGGCAACTGAAGCCGGTTTCCTGTACCGCCAGCGACAATTCCTGCCAGCCGCTGCCACG
CAGGTGACTGTCGGCGGACGCGTCCCAGGCGCGTCGGTTGCTTTCCACCGCGTGTTCAAGATCCGTCATGCG
AAAACCTCAGAAGTGTTCCCAGGAAGGCCAGCCGAGTCGCGAACCCGCAGCCCACTCAATCGCGGAATTGCA
GCCCGATATGGGCTCGGCAGTCGCGTCGTTCCAGGCTGCCTTCCTGGAAAGCGCCGCAGGCGCGGTTTCTCA
GAGGCAGCGTCTGTTCCACCACGGTCACCCGCACCTCGTTCGCCGGTTGGCGCTGCTCGGCGGGTCGCGGCG
CCTGACGCCGGCCGTTCAGGTTGTCGGCCCCGCCTGGCGGGATGCGCCGGCGCGTCGCGGCGATCCGCCTGC
ATGCTCAATAGAGACCGGTGGCGCTGCCTCGCTCGAACAGCGGCACCTGGTTGGCCAGGATCATGTTGTAGC
TGA

Translation:

MRARLPPTSRSPPPPSPARQPPPSANARTADPRAGRCICGGCLRRWSMTRAGSNPWSRTPSAAIHGCRGTGG
CAAGPGPGCGEGPGRTPSSARNSAIPHGWRGPRATRGRRCSCRRRPSAAPSSPAPLRARSVRGARLASRGPS
RVGRVRHAYNPAWRPARRRRSTSRPRWCRPPPHAAARLARPRRRSCLDRDQRVAHRDRQRSVLVEVVEFLAV
RVRVLLEVTQAQAGAEQPAEDVAERVDVPVAGDAGIAAAAFVDDGLPGYVGRVGEVVVAQFERSLRLGFEHL
QERVGLIDRQLPARLQQAAHRGEEARDVGHPVEHTDGDQQQVELTVQLGRQLVGIGFDETRLMRRALGQLPR
LGEEGGGLVDPHRPRDAEGVQRKHFPAVVAADLDRRLAGQVQIAQHASQGLVQATEAGFLYRQRQFLPAAAT
QVTVGGRVPGASVAFHRVFKIRHAKTSEVFPGRPAESRTRSPLNRGIAARYGLGSRVVPGCLPGKRRRRGFS
EAASVPPRSPAPRSPVGAARRVAAPDAGRSGCRPRLAGCAGASRRSACMLNRDRWRCLARTAAPGWPGSCCS
*

AnnotationID:6758 GeneID:6757

AnnotatorUID: diggins

Modification Date/Time: 2005-02-09 07:07:37

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16511

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30598

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37687

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6757_cdd.html

URL:

GC ORFID: `49759`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `4918751`	Stop: `4920481`
Length: `1731`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGCGAGCACGGCTTCCACCAACCTCTCGATCACCTCCCCCACCCTCCCCGGCTCGCCAACCTCCACCCAGC GCAAATGCGCGAACCGCGGATCCTCGCGCAGGCCGGTGTATTTGCGGCGGTTGCCTGCGAAGGTGGTCCATG ACCAGAGCAGGATCGAATCCCTGGAGCAGAACGCCATCCGCAGCGATTCACGGTTGCCGTGGGACAGGCGGG TGCGCAGCAGGCCCCGGGCCAGGGTGCGGCGAAGGACCCGGGAGAACACCGTCCAGCGCCCGAAATTCAGCC ATACCACATGGGTGGCGCGGCCCCAGAGCAACTCGCGGACGGCGCTGTAGTTGCCGTCGGCGACCCAGCGCG GCGCCGTCGTCGCCCGCTCCACTGCGTGCTCGAAGCGTTCGTGGGGCACGGCTTGCCAGCCGGGGCCCCAGT AGAGTCGGTCGAGTTCGACATGCGTACAACCCAGCCTGGCGGCCAGCGCGGCGGAGAAGGTCGACTTCCCGG CCCCGCTGGTGCCGACCACCACCACACGCAGCGGCGCGCCTCGCCCGGCCTCGACGCAGGTCATGCCTTGAC CGCGACCAGCGTGTAGCACATCGGGATCGCCAGCGGTCCGTCCTCGTAGAGGTCGTAGAGTTCCTCGCGGTT CGAGTGCGGGTACTCCTTGAAGTGACTCAGGCGCAGGCCGGCGCCGAGCAGCCCGCCGAGGATGTCGCCGAG CGGGTGGACGTACCAGTAGCTGGCGATGCCGGTATCGCTGCCGCTGCCTTCGTAGACGATGGCCTCCCGGGA TACGTGGGGCGTGTCGGTGAAGTAGTCGTTGCGCAGTTCGAACGGTCGCTCCGACTCGGGTTCGAGCATCTC CAGGAACGGGTGGGTCTCATAGATCGCCAATTGCCCGCCCGGCTTCAGCAGGCCGCTCACCGAGGCGAAGAA GCGCGCGATGTCGGGCATCCAGTTGAGCACACCGATGGTGATCAGCAGCAGGTCGAACTGACCGTTCAGCTC GGCCGGCAGCTCGTAGGCATTGGCTTCGACGAAACGCGGCTGATGCGGCGAGCGCTCGGCCAGTTGCCGCGC CTGGGCGAGGAAGGCGGCGGACTGGTCGATCCCCACCGCCCGCGCGACGCCGAAGGCGTACAGCGAAAGCAC TTCCCGGCCGTTGTTGCAGCCGACCTGGACCGCCGCCTTGCCGGCCAGGTCCAGATTGCGCAGCACGCCAGC CAGGGTCTCGTCCAGGCAACTGAAGCCGGTTTCCTGTACCGCCAGCGACAATTCCTGCCAGCCGCTGCCACG CAGGTGACTGTCGGCGGACGCGTCCCAGGCGCGTCGGTTGCTTTCCACCGCGTGTTCAAGATCCGTCATGCG AAAACCTCAGAAGTGTTCCCAGGAAGGCCAGCCGAGTCGCGAACCCGCAGCCCACTCAATCGCGGAATTGCA GCCCGATATGGGCTCGGCAGTCGCGTCGTTCCAGGCTGCCTTCCTGGAAAGCGCCGCAGGCGCGGTTTCTCA GAGGCAGCGTCTGTTCCACCACGGTCACCCGCACCTCGTTCGCCGGTTGGCGCTGCTCGGCGGGTCGCGGCG CCTGACGCCGGCCGTTCAGGTTGTCGGCCCCGCCTGGCGGGATGCGCCGGCGCGTCGCGGCGATCCGCCTGC ATGCTCAATAGAGACCGGTGGCGCTGCCTCGCTCGAACAGCGGCACCTGGTTGGCCAGGATCATGTTGTAGC TGA