ViewGene
Locus Name:
GeneID:
Location:

GeneID:6754
TrivialName: PA14_63180
AnnotatorUID: diggins
Modification Date/Time:2006-04-23 21:09:12
LocusName:PA14_63180
PAO1 Ortholog Locus:
Sequence Length:567
Protein Length:188
Start: 5639114
Stop: 5638548
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP09138.1| (AE017005) IG hypothetical 18880 [Bacillus cereus ATCC 14579]
Identities = 70/185 (37%), Positives = 106/185 (57%), Gaps = 5/185 (2%)
Sequence:
ATGAAAACGGCGGAAGACATCCTCGCGCTGATCGCCGCCGATTCCTCGCGCCTGCATCTGCTCCGCGTGCTG
CGCGAGGTCGGCCCGGAGGGCGCCTGGATCGGCGCCGGCTTCGTGCGCAACGCGGTATGGGACCATCTGCAT
GGCTACGGCGAAGCCACGCCGCTGGCGGACATCGACGTACTTCATTTCGCCCCGCGGGCCCTCGACCCGCAG
GCCGACGCCGACTTCGAGGCCGCGTTGCGCCGTCGCTGCGAGGCGCCCTGGTCGGTGAAGAACCAGGCGCGC
ATGCACCTGCGCAACGGCGACCGGCCCTACCGGGATTGCGCCGATGCGCTGTGCCACTGGGCGGAAACGTGC
ACGGCGGTGGCGCTGCGGCTCGTCGGCGAACGCCTGGAGCTACTGGCACCGCTGGGCGTCGACGACCTGCTG
GCGCTGAAGGTGCGGCCCACCGCGCATTTCGCCGGCAAGCCGGAGGTCTACCGGCGGCGCCTGCGGGAGAAG
AACTGGACGGCGCGCTGGCCACTGCTGGATATCAGTGGCAGCAGCCAGACGCCAGGTCCTTGA
Translation:
MKTAEDILALIAADSSRLHLLRVLREVGPEGAWIGAGFVRNAVWDHLHGYGEATPLADIDVLHFAPRALDPQ
ADADFEAALRRRCEAPWSVKNQARMHLRNGDRPYRDCADALCHWAETCTAVALRLVGERLELLAPLGVDDLL
ALKVRPTAHFAGKPEVYRRRLREKNWTARWPLLDISGSSQTPGP*
AnnotationID:6755GeneID:6754
AnnotatorUID: diggins
Modification Date/Time: 2006-04-23 21:09:38
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:13241




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30593




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37662




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6754_cdd.html


    		




 
URL:









      

          
GC ORFID: 49756How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4902794Stop: 4902228

          
Length: 567


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAAAACGGCGGAAGACATCCTCGCGCTGATCGCCGCCGATTCCTCGCGCCTGCATCTGCTCCGCGTGCTG 
CGCGAGGTCGGCCCGGAGGGCGCCTGGATCGGCGCCGGCTTCGTGCGCAACGCGGTATGGGACCATCTGCAT 
GGCTACGGCGAAGCCACGCCGCTGGCGGACATCGACGTACTTCATTTCGCCCCGCGGGCCCTCGACCCGCAG 
GCCGACGCCGACTTCGAGGCCGCGTTGCGCCGTCGCTGCGAGGCGCCCTGGTCGGTGAAGAACCAGGCGCGC 
ATGCACCTGCGCAACGGCGACCGGCCCTACCGGGATTGCGCCGATGCGCTGTGCCACTGGGCGGAAACGTGC 
ACGGCGGTGGCGCTGCGGCTCGTCGGCGAACGCCTGGAGCTACTGGCACCGCTGGGCGTCGACGACCTGCTG 
GCGCTGAAGGTGCGGCCCACCGCGCATTTCGCCGGCAAGCCGGAGGTCTACCGGCGGCGCCTGCGGGAGAAG 
AACTGGACGGCGCGCTGGCCACTGCTGGATATCAGTGGCAGCAGCCAGACGCCAGGTCCTTGA