ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6742

TrivialName: PA14_62320

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_62320

PAO1 Ortholog Locus:

Sequence Length: 1266

Protein Length: 421

Start: 5560726

Stop: 5559461

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAA55649.1| (X79027) unknown [Microbacterium ammoniaphilum] Identities = 125/388 (32%), Positives = 148/388 (38%), Gaps = 64/388 (16%)

Sequence:

TTGCGTCCACGAACGCAAGGGGCCGTATCGCGAAGTGACGGTCTCTGCCAATGGGCAGATGGGCCTGGTGGT
CTCGCCGGATATCGACCTGCGCCTGTTTCTGGGGGGTTGGAACGCTGTCTTCGCCATTGCCGAGGAGACATC
GCGGGGTACCCAGCGCAGCATCCAGGTGTTCGACCAGCAGGGCGTGGCGGTGCACAAGGTGTTCCTTACCGA
GGCCAGCGACGTCCGCGCCTGGGAACCGCTGGTCGAGCGCCTGCGGGCTGCCGAGCAGGATGCCGTGCTGGC
CCTGCGCGAACCCCGCGCACCGGCTGCTGCGCTCGTCGATGCGCAGATCGATGCCGTAGCCTTGCGCGAAGG
CTGGGCCGCGTTGAAGGACACCCATCATTTCCACGCCCTGCTGAAGAAGCATGGCGCGCAGCGCACCCAGGC
GCTGCGCCTGGCTGGCGGCGAATGGGCCGAGCGCCTGGACAAGGGCGACCTGGCGAAACTCTTCGAAGCGGC
GGCCGAAAGCGGGTTGCCGATCATGGTGTTCGTCGGCAACGCCCACTGCATCCAGATCCATACCGGGTCTGT
GTGCAACCTGAAGTGGCTGGACGACTGGTTCAACGTGCTCGATCCGGAATTCAACCTGCACCTGAAGACCAC
CGGCATCGCCGAGCTTTGGCGGGTGCGCAAGCCGAGCACCGATGGCATCGTAACCAGTTGGGAGGCCTTCGA
CGCCGACGGCGAACTGATCGTGCAACTGTTCGGCGCGCGCAAGCCCGGCGAGCCCGAGCGCGACGACTGGCG
CGAACTGGCCGAATCCGTCAAGGCGCTCTGAGGAGAGATCATGCGTATCGATCGACTATTCAACGGGTTGGC
GCTGGGCATCCTGCTCGGCACCGGCATGGCCCAGGCCGCCGAGCTGCCGCAACGCTGGGTGAGCGCGGGCGG
CTCGCTGAGCGAATGGGTGGTGGCGCTGGGCGGCGAGAGCAAGCTGGTCGGGGTGGACACCACCAGCCAGCA
TCCGCAGGCGCTGAAACAGTTGCCGAGCGTCGGCTACCAGCGCCAACTGGCTGCCGAGGGCGTGCTGGCGTT
GCGTCCGGATATCCTCATCGGCACCGAGGAAATGGGGCCTCCGCCGGTACTCAAGCAGCTCGAAGGCGCCGG
CGTGCGGGTCGAGACCCTCTCCGCCAAGCCGGATCTGGAGGCACTGGAAAGCAACCTGAAGAAGCTCGGCGA
CTGGCTCGGCGTGCCCCAGCGCGCCGAGGCCGCCGAACTTGA

Translation:

MRPRTQGAVSRSDGLCQWADGPGGLAGYRPAPVSGGLERCLRHCRGDIAGYPAQHPGVRPAGRGGAQGVPYR
GQRRPRLGTAGRAPAGCRAGCRAGPARTPRTGCCARRCADRCRSLARRLGRVEGHPSFPRPAEEAWRAAHPG
AAPGWRRMGRAPGQGRPGETLRSGGRKRVADHGVRRQRPLHPDPYRVCVQPEVAGRLVQRARSGIQPAPEDH
RHRRALAGAQAEHRWHRNQLGGLRRRRRTDRATVRRAQARRARARRLARTGRIRQGALRRDHAYRSTIQRVG
AGHPARHRHGPGRRAAATLGERGRLAERMGGGAGRREQAGRGGHHQPASAGAETVAERRLPAPTGCRGRAGV
ASGYPHRHRGNGASAGTQAARRRRRAGRDPLRQAGSGGTGKQPEEARRLARRAPARRGRRT*

AnnotationID:6743 GeneID:6742

AnnotatorUID: diggins

Modification Date/Time: 2005-02-05 19:07:56

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16497

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30569

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37614

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6742_cdd.html

URL:

GC ORFID: `49744`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `4824406`	Stop: `4823141`
Length: `1266`
Start Codon: `TTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCGTCCACGAACGCAAGGGGCCGTATCGCGAAGTGACGGTCTCTGCCAATGGGCAGATGGGCCTGGTGGT CTCGCCGGATATCGACCTGCGCCTGTTTCTGGGGGGTTGGAACGCTGTCTTCGCCATTGCCGAGGAGACATC GCGGGGTACCCAGCGCAGCATCCAGGTGTTCGACCAGCAGGGCGTGGCGGTGCACAAGGTGTTCCTTACCGA GGCCAGCGACGTCCGCGCCTGGGAACCGCTGGTCGAGCGCCTGCGGGCTGCCGAGCAGGATGCCGTGCTGGC CCTGCGCGAACCCCGCGCACCGGCTGCTGCGCTCGTCGATGCGCAGATCGATGCCGTAGCCTTGCGCGAAGG CTGGGCCGCGTTGAAGGACACCCATCATTTCCACGCCCTGCTGAAGAAGCATGGCGCGCAGCGCACCCAGGC GCTGCGCCTGGCTGGCGGCGAATGGGCCGAGCGCCTGGACAAGGGCGACCTGGCGAAACTCTTCGAAGCGGC GGCCGAAAGCGGGTTGCCGATCATGGTGTTCGTCGGCAACGCCCACTGCATCCAGATCCATACCGGGTCTGT GTGCAACCTGAAGTGGCTGGACGACTGGTTCAACGTGCTCGATCCGGAATTCAACCTGCACCTGAAGACCAC CGGCATCGCCGAGCTTTGGCGGGTGCGCAAGCCGAGCACCGATGGCATCGTAACCAGTTGGGAGGCCTTCGA CGCCGACGGCGAACTGATCGTGCAACTGTTCGGCGCGCGCAAGCCCGGCGAGCCCGAGCGCGACGACTGGCG CGAACTGGCCGAATCCGTCAAGGCGCTCTGAGGAGAGATCATGCGTATCGATCGACTATTCAACGGGTTGGC GCTGGGCATCCTGCTCGGCACCGGCATGGCCCAGGCCGCCGAGCTGCCGCAACGCTGGGTGAGCGCGGGCGG CTCGCTGAGCGAATGGGTGGTGGCGCTGGGCGGCGAGAGCAAGCTGGTCGGGGTGGACACCACCAGCCAGCA TCCGCAGGCGCTGAAACAGTTGCCGAGCGTCGGCTACCAGCGCCAACTGGCTGCCGAGGGCGTGCTGGCGTT GCGTCCGGATATCCTCATCGGCACCGAGGAAATGGGGCCTCCGCCGGTACTCAAGCAGCTCGAAGGCGCCGG CGTGCGGGTCGAGACCCTCTCCGCCAAGCCGGATCTGGAGGCACTGGAAAGCAACCTGAAGAAGCTCGGCGA CTGGCTCGGCGTGCCCCAGCGCGCCGAGGCCGCCGAACTTGA