ViewGene

Locus Name:
GeneID:
Location:

GeneID:6739
TrivialName: PA14_62210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62210
PAO1 Ortholog Locus:
Sequence Length:2343
Protein Length:780
Start: 5550098
Stop: 5552440
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
TTGCGGATGCGCCTTGCGCATGAAGCTGGCCCACACCTGCAAGGCACCGGTGGCGCCGGTAAGCGGCGTCTT
GCCGTTGTCGTCGCGACCGAGCCAGACCACAGCCTGGAGGTCGCCGCCGAAACCGGAGAACCAGCTATCGCG
CGAGTCGTTGCTGGTGCCGGTCTTGCCGGCGAGGGTCAGCGACGACGGCAATTGACTGTACACCGACCGCCC
GGTGCCTTCGCGCATGACCCGCTGCATGGCGTTCTGCACCAGGTAGACGGCGCCCGAGTCGAAGCGCTGTTC
GACCTGGAACGGATAGCGCTTGAGCGGCTGGCCGTCGGCAGTGAGGACGCTGCGGATCCCCCGCAACGGCGT
GTTGAAGCCGCCGCTGGCGATGGTCTGGTACATGGTGGCGACCTCCATCGGACTGAGCGAACCGGCGCCCAG
CAGCATCGACGGATAGGCTGGCCAGTCACGGTTGATGCCCAGCCGGGCGACGGTCTGCAGCACGTTGGGCAC
ACCGACGTCGAGGCCGAGCTTGGCGGTGGACAGGTTGTAGGAGTTTGCCAGGCCCTGGTACAGGAAGATCGT
GCCATGCGAGCGCCGGTCGTAGTTCTGCGGTCGCCAGACCTGGCCGTCCTGGCCTTTCACCGCGAAGGGTTC
GTCCTGCACCCAGGTGGTCAGGGTGTACTTGCTCGGCCGCTCGAGTGCGGTCAGGTAGACCGCCGGCTTGAT
CAGCGAACCGATCGGCCGCACCGCGTCCAGGGCCCGGTTGAAGCCGGCGAAGCGCGGGTCGCGACTGCCGAT
CAGGGCCTGGATCTCGCCGGTTTCCGGATTGGTCACGACCATCGCCGCCTCGACCTGGTCGACTCCCTTGCG
CCCACTGAGGCGCTTGAGCGTTTCGTTGACGGAGGTCTCGGCCTTCTCCTGCAGGATCGGATCGAAGCTGGT
GAAGATGCGCAGCCCTTCCTCGGTCAGGTCCTCGTCGCGGTAGTCCTGGCGCAACTGGCGCTTGACCAGGTC
GAGGAAGGCCGGATAGGAGCTGTCGGCCATGCTGCCCTGCCGGGTCACGCCGAGCGGGCGCTGCTTGGCGGC
GTCGACTTCCTGCTGGGTCGCCACGCCCTGCTCGGCGAGCACATCGAGCACCAGGTTGCGCCGCGCCAGCGC
ACGATCCGGGTAACGCCGCGGGTTGAAGTAGGACGGTCCCTTGACCATGCCGACCAGCAGCGCCACCTGGTC
GAGCTTGAGCTCGGCCAGCGGCTGGCTGAAGAAATACTGGCTGGCCAGGCCGAAGCCATGGATCGCTCGTTG
CCCATCCTGGCCGAGGAACACCTCGTTGAGATAGGACTCGAGGATGTCGCGCTTGTCGTAGTGCAGCTCCAG
CAGCACCGCCATCATCGCTTCGTTGATCTTGCGGCTCAGGCTGCGTTCGTTGCTCAGGAAGAAGTTCTTCAC
CAACTGCTGGGTCAGGGTGCTGCCGCCCTGGCGCAGCTGGCCGGCCGTGGTGTTGACCCACACCGCCCGGGC
CACGGACTTCAGCGACACGCCATGGTGGTTCCAGAAGTCGCGATCCTCGACCGCGACCAGGGTGTCGATCAG
GTAGGTCGGCACCTGGTCGAGCTTGACCAGGATGCGATCCTCATGGTGCGCCGGATACAAGCCGCCGATCAG
CAGCGGCTCAAGGCGCGCCACCGCCAGTTCCTTGCCGTTGGCCTGGCTCAGCCCGCTGACGTAGTTGCCGTT
GAAGCGCACGCGCACGCGCTGGGCCGGTTCCGCGCCTTCGTAGAACTGGAAGCCACGGGTATTGAGTTCGAC
CGCGCTGGCCGCCACCGACACGGTTCCAGGGCCGCTCACGCTGGGCTCGCGACGGTAGCCGAGGGCGTCGAG
TTCGCGCAGGAAGTCTTCCCTGCTCAGCTTCAGGCCGTTGAACAGCTCCAGCGGGCGGGCATAGACCTTCGC
CGGGATGGTCCAGCGCCGGCCGGAGAATTTCTCCTGCACCACGGCATCGAGATAGATGGCGAAGCCGGCGAG
GAGCACCAGGCCGACGAGGCCGAGCTTGAGGGCCCAGCCGAGCCATTTGTTCAGGCCGGGTGCCGGGCGTGC
TTTGCTGTTACGGGAACGGGGGGATCGGGGACGCGTCATGGCGGCGCATTATACGTACTTTATCCACAGCGG
ACAGACACCGCATCGGCGGCATCCACGGTCTGCGCGGCCCCGGTGGATAGGCGCGGCGGCAGCGCGGCGCAT
TCGACCGGCGATCCGGCAAATGGTTGCTATCCGCCAGCGAGGTTTGCACTGTCACCCCTTCCCGCCATAATG
CGGGTTTTCGCATATTTCAGAGGCAAGGATATCCCGTGA
Translation:
MRMRLAHEAGPHLQGTGGAGKRRLAVVVATEPDHSLEVAAETGEPAIARVVAGAGLAGEGQRRRQLTVHRPP
GAFAHDPLHGVLHQVDGARVEALFDLERIALERLAVGSEDAADPPQRRVEAAAGDGLVHGGDLHRTERTGAQ
QHRRIGWPVTVDAQPGDGLQHVGHTDVEAELGGGQVVGVCQALVQEDRAMRAPVVVLRSPDLAVLAFHREGF
VLHPGGQGVLARPLECGQVDRRLDQRTDRPHRVQGPVEAGEARVATADQGLDLAGFRIGHDHRRLDLVDSLA
PTEALERFVDGGLGLLLQDRIEAGEDAQPFLGQVLVAVVLAQLALDQVEEGRIGAVGHAALPGHAERALLGG
VDFLLGRHALLGEHIEHQVAPRQRTIRVTPRVEVGRSLDHADQQRHLVELELGQRLAEEILAGQAEAMDRSL
PILAEEHLVEIGLEDVALVVVQLQQHRHHRFVDLAAQAAFVAQEEVLHQLLGQGAAALAQLAGRGVDPHRPG
HGLQRHAMVVPEVAILDRDQGVDQVGRHLVELDQDAILMVRRIQAADQQRLKARHRQFLAVGLAQPADVVAV
EAHAHALGRFRAFVELEATGIEFDRAGRHRHGSRAAHAGLATVAEGVEFAQEVFPAQLQAVEQLQRAGIDLR
RDGPAPAGEFLLHHGIEIDGEAGEEHQADEAELEGPAEPFVQAGCRACFAVTGTGGSGTRHGGALYVLYPQR
TDTASAASTVCAAPVDRRGGSAAHSTGDPANGCYPPARFALSPLPAIMRVFAYFRGKDIP*
AnnotationID:6740GeneID:6739
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 21:09:28
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:16495
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30563
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49741How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 4813778Stop: 4816120
Length: 2343
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCGGATGCGCCTTGCGCATGAAGCTGGCCCACACCTGCAAGGCACCGGTGGCGCCGGTAAGCGGCGTCTT
GCCGTTGTCGTCGCGACCGAGCCAGACCACAGCCTGGAGGTCGCCGCCGAAACCGGAGAACCAGCTATCGCG
CGAGTCGTTGCTGGTGCCGGTCTTGCCGGCGAGGGTCAGCGACGACGGCAATTGACTGTACACCGACCGCCC
GGTGCCTTCGCGCATGACCCGCTGCATGGCGTTCTGCACCAGGTAGACGGCGCCCGAGTCGAAGCGCTGTTC
GACCTGGAACGGATAGCGCTTGAGCGGCTGGCCGTCGGCAGTGAGGACGCTGCGGATCCCCCGCAACGGCGT
GTTGAAGCCGCCGCTGGCGATGGTCTGGTACATGGTGGCGACCTCCATCGGACTGAGCGAACCGGCGCCCAG
CAGCATCGACGGATAGGCTGGCCAGTCACGGTTGATGCCCAGCCGGGCGACGGTCTGCAGCACGTTGGGCAC
ACCGACGTCGAGGCCGAGCTTGGCGGTGGACAGGTTGTAGGAGTTTGCCAGGCCCTGGTACAGGAAGATCGT
GCCATGCGAGCGCCGGTCGTAGTTCTGCGGTCGCCAGACCTGGCCGTCCTGGCCTTTCACCGCGAAGGGTTC
GTCCTGCACCCAGGTGGTCAGGGTGTACTTGCTCGGCCGCTCGAGTGCGGTCAGGTAGACCGCCGGCTTGAT
CAGCGAACCGATCGGCCGCACCGCGTCCAGGGCCCGGTTGAAGCCGGCGAAGCGCGGGTCGCGACTGCCGAT
CAGGGCCTGGATCTCGCCGGTTTCCGGATTGGTCACGACCATCGCCGCCTCGACCTGGTCGACTCCCTTGCG
CCCACTGAGGCGCTTGAGCGTTTCGTTGACGGAGGTCTCGGCCTTCTCCTGCAGGATCGGATCGAAGCTGGT
GAAGATGCGCAGCCCTTCCTCGGTCAGGTCCTCGTCGCGGTAGTCCTGGCGCAACTGGCGCTTGACCAGGTC
GAGGAAGGCCGGATAGGAGCTGTCGGCCATGCTGCCCTGCCGGGTCACGCCGAGCGGGCGCTGCTTGGCGGC
GTCGACTTCCTGCTGGGTCGCCACGCCCTGCTCGGCGAGCACATCGAGCACCAGGTTGCGCCGCGCCAGCGC
ACGATCCGGGTAACGCCGCGGGTTGAAGTAGGACGGTCCCTTGACCATGCCGACCAGCAGCGCCACCTGGTC
GAGCTTGAGCTCGGCCAGCGGCTGGCTGAAGAAATACTGGCTGGCCAGGCCGAAGCCATGGATCGCTCGTTG
CCCATCCTGGCCGAGGAACACCTCGTTGAGATAGGACTCGAGGATGTCGCGCTTGTCGTAGTGCAGCTCCAG
CAGCACCGCCATCATCGCTTCGTTGATCTTGCGGCTCAGGCTGCGTTCGTTGCTCAGGAAGAAGTTCTTCAC
CAACTGCTGGGTCAGGGTGCTGCCGCCCTGGCGCAGCTGGCCGGCCGTGGTGTTGACCCACACCGCCCGGGC
CACGGACTTCAGCGACACGCCATGGTGGTTCCAGAAGTCGCGATCCTCGACCGCGACCAGGGTGTCGATCAG
GTAGGTCGGCACCTGGTCGAGCTTGACCAGGATGCGATCCTCATGGTGCGCCGGATACAAGCCGCCGATCAG
CAGCGGCTCAAGGCGCGCCACCGCCAGTTCCTTGCCGTTGGCCTGGCTCAGCCCGCTGACGTAGTTGCCGTT
GAAGCGCACGCGCACGCGCTGGGCCGGTTCCGCGCCTTCGTAGAACTGGAAGCCACGGGTATTGAGTTCGAC
CGCGCTGGCCGCCACCGACACGGTTCCAGGGCCGCTCACGCTGGGCTCGCGACGGTAGCCGAGGGCGTCGAG
TTCGCGCAGGAAGTCTTCCCTGCTCAGCTTCAGGCCGTTGAACAGCTCCAGCGGGCGGGCATAGACCTTCGC
CGGGATGGTCCAGCGCCGGCCGGAGAATTTCTCCTGCACCACGGCATCGAGATAGATGGCGAAGCCGGCGAG
GAGCACCAGGCCGACGAGGCCGAGCTTGAGGGCCCAGCCGAGCCATTTGTTCAGGCCGGGTGCCGGGCGTGC
TTTGCTGTTACGGGAACGGGGGGATCGGGGACGCGTCATGGCGGCGCATTATACGTACTTTATCCACAGCGG
ACAGACACCGCATCGGCGGCATCCACGGTCTGCGCGGCCCCGGTGGATAGGCGCGGCGGCAGCGCGGCGCAT
TCGACCGGCGATCCGGCAAATGGTTGCTATCCGCCAGCGAGGTTTGCACTGTCACCCCTTCCCGCCATAATG
CGGGTTTTCGCATATTTCAGAGGCAAGGATATCCCGTGA