ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6716

TrivialName: PA14_60980

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_60980

PAO1 Ortholog Locus:

Sequence Length: 1797

Protein Length: 598

Start: 5441512

Stop: 5439716

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAB49465.1| (U89384) unknown [Pseudomonas aeruginosa] Identities = 89/123 (72%), Positives = 93/123 (75%), Gaps = 7/123 (5%)

Sequence:

ATGCACGCCCAGGGCGGCGGTCGCCGCCAGGAGCAGCAGCTTGAGCTGCAGGGCACGGGCCACCGGCGTGGC
GCCGAACCAGTGGTGGAACGGCAGCCACAGGCTGGCCAGCCACAGGCCGCTGACCACCTGCAGCAGCAGGGC
GGGGATGCCGATCCGCTCGTAGACCTGCTCGAAGGCGCGGATCGCCTGGGGATCGCGGCGGCGCAGGGCGCC
GGGGAGGATGCCGAGGGCCAGGACCAGGTGGCCGCCGACCCAGATCGCGGCACCCAGCAGGTGCAGGAACAG
CAGTGTGCGCATGGAAGTCTCCTTGTCCGGCCATCAGTGTCGCGCGAAGCGCGGTCGATCGAGGCTGATCGG
AATCAAGCCAGCGGCTATCATCTGCGCTTTGCCCGCGAGAGGAGTTCCCATGGCCAAGGCCAAGCGCATGTA
CGGCTGCACCGAGTGTGGCGCGACCTTCCCGAAATGGGCCGGCCAGTGTGCGGATTGCGGGGCCTGGAACAC
CCTGGTGGAGACCGTCGTCGAGGCCGCGCCGAGCGGCTCCGGGCGCGGCGGCTGGGCCGGCCAGCAGGCCAA
CCTGAAGACCCTGGCGGAGGTCAGCGTCGAGGAGATGCCGCGCTTCACGACCGGTTCCACCGAACTGGACCG
GGTTCTCGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGAC
CATTCTCCTGCAGACCCTTTGCAACCTGGCCAGCCGCGTCCCGGCGCTGTACGTCACCGGCGAGGAATCCCA
GCAGCAGGTGGCGATGCGCGCGCGGCGCCTGTCGTTGCCGGAAGACAAGCTCAAGGTGATGACCGAGACCAG
CATCGAGACCATCATCGCCACCGCGCGCCAGGAGCAGCCGCGGGTGATGGTGATCGACTCGATCCAGACCAT
CTTCACCGAGCAGTTGCAATCGGCGCCGGGCGGCGTCGCCCAGGTCCGCGAGAGCGCCGCGATGCTGGTGCG
CTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGGTCGGCCACGTGACCAAGGAAGGCGCCCTGGCCGGCCC
GCGGGTGCTCGAACACATGGTCGACACCGTACTGTATTTCGAAGGCGAGTCAGACGGCCGCCTGCGCCTGCT
GCGGGCAGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGAGTGTTCGGCATGACCGACAAAGGCCTGAA
GGAAGTGAGCAACCCTTCGGCGATCTTCCTCACGCGGGCCCAGGAAGCGGTGCCCGGCAGCGTGGTGATGGC
CACCTGGGAAGGCTCGCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTCGACACCAGTCACCTGGCGAATCC
GCGGCGGGTGACCCTGGGCCTCGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGGCGG
TATCCCGACCTACGACCAGGACGTGTTCCTCAACGTGGTGGGTGGGGTCAAGGTGCTGGAAACCGCCTCCGA
CCTGGCGTTGATGGCGGCGGTGATGTCCAGCTTGCGCAACCGCCCGCTGCCGCACGACCTGCTGGTGTTCGG
CGAGGTCGGGCTGTCCGGCGAGGTGCGTCCGGTGCCGAGCGGCCAGGAGCGCCTGAAGGAAGCCGGCAAGCA
TGGTTTCAAGCGTGCCATCGTACCCCTCGGCAACGCGCCGAAGGAGGCGCCGGCGGGATTGCAGGTGATCGC
CGTGACGCGCCTCGAGCAGGCCCTGGACGCCCTCTTCGAGTGACCCGCCTCAGTCGTCGTGGGCGCTGA

Translation:

MHAQGGGRRQEQQLELQGTGHRRGAEPVVERQPQAGQPQAADHLQQQGGDADPLVDLLEGADRLGIAAAQGA
GEDAEGQDQVAADPDRGTQQVQEQQCAHGSLLVRPSVSREARSIEADRNQASGYHLRFARERSSHGQGQAHV
RLHRVWRDLPEMGRPVCGLRGLEHPGGDRRRGRAERLRARRLGRPAGQPEDPGGGQRRGDAALHDRFHRTGP
GSRRRPGGRFGGADRRRSRHRQVDHSPADPLQPGQPRPGAVRHRRGIPAAGGDARAAPVVAGRQAQGDDRDQ
HRDHHRHRAPGAAAGDGDRLDPDHLHRAVAIGAGRRRPGPRERRDAGALCQAERHGDLPGRPRDQGRRPGRP
AGARTHGRHRTVFRRRVRRPPAPAAGSEEPLRRGQRTGSVRHDRQRPEGSEQPFGDLPHAGPGSGARQRGDG
HLGRLAADAGGGPGAGRHQSPGESAAGDPGPRPEPPGDAAGGAAPARRYPDLRPGRVPQRGGWGQGAGNRLR
PGVDGGGDVQLAQPPAAARPAGVRRGRAVRRGASGAERPGAPEGSRQAWFQACHRTPRQRAEGGAGGIAGDR
RDAPRAGPGRPLRVTRLSRRGR*

AnnotationID:6717 GeneID:6716

AnnotatorUID: diggins

Modification Date/Time: 2004-04-04 23:11:39

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:13180

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30518

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31616

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6716_cdd.html

URL:

Homologs By Global Alignment

Gene ID:6716

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

201645 gb|AAB49465.1| (U89384) unknown [Pseudomonas aeruginosa] 598 14.54 15.88 477 418.0

GC ORFID: `49718`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `4705192`	Stop: `4703396`
Length: `1797`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCACGCCCAGGGCGGCGGTCGCCGCCAGGAGCAGCAGCTTGAGCTGCAGGGCACGGGCCACCGGCGTGGC GCCGAACCAGTGGTGGAACGGCAGCCACAGGCTGGCCAGCCACAGGCCGCTGACCACCTGCAGCAGCAGGGC GGGGATGCCGATCCGCTCGTAGACCTGCTCGAAGGCGCGGATCGCCTGGGGATCGCGGCGGCGCAGGGCGCC GGGGAGGATGCCGAGGGCCAGGACCAGGTGGCCGCCGACCCAGATCGCGGCACCCAGCAGGTGCAGGAACAG CAGTGTGCGCATGGAAGTCTCCTTGTCCGGCCATCAGTGTCGCGCGAAGCGCGGTCGATCGAGGCTGATCGG AATCAAGCCAGCGGCTATCATCTGCGCTTTGCCCGCGAGAGGAGTTCCCATGGCCAAGGCCAAGCGCATGTA CGGCTGCACCGAGTGTGGCGCGACCTTCCCGAAATGGGCCGGCCAGTGTGCGGATTGCGGGGCCTGGAACAC CCTGGTGGAGACCGTCGTCGAGGCCGCGCCGAGCGGCTCCGGGCGCGGCGGCTGGGCCGGCCAGCAGGCCAA CCTGAAGACCCTGGCGGAGGTCAGCGTCGAGGAGATGCCGCGCTTCACGACCGGTTCCACCGAACTGGACCG GGTTCTCGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGAC CATTCTCCTGCAGACCCTTTGCAACCTGGCCAGCCGCGTCCCGGCGCTGTACGTCACCGGCGAGGAATCCCA GCAGCAGGTGGCGATGCGCGCGCGGCGCCTGTCGTTGCCGGAAGACAAGCTCAAGGTGATGACCGAGACCAG CATCGAGACCATCATCGCCACCGCGCGCCAGGAGCAGCCGCGGGTGATGGTGATCGACTCGATCCAGACCAT CTTCACCGAGCAGTTGCAATCGGCGCCGGGCGGCGTCGCCCAGGTCCGCGAGAGCGCCGCGATGCTGGTGCG CTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGGTCGGCCACGTGACCAAGGAAGGCGCCCTGGCCGGCCC GCGGGTGCTCGAACACATGGTCGACACCGTACTGTATTTCGAAGGCGAGTCAGACGGCCGCCTGCGCCTGCT GCGGGCAGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGAGTGTTCGGCATGACCGACAAAGGCCTGAA GGAAGTGAGCAACCCTTCGGCGATCTTCCTCACGCGGGCCCAGGAAGCGGTGCCCGGCAGCGTGGTGATGGC CACCTGGGAAGGCTCGCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTCGACACCAGTCACCTGGCGAATCC GCGGCGGGTGACCCTGGGCCTCGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGGCGG TATCCCGACCTACGACCAGGACGTGTTCCTCAACGTGGTGGGTGGGGTCAAGGTGCTGGAAACCGCCTCCGA CCTGGCGTTGATGGCGGCGGTGATGTCCAGCTTGCGCAACCGCCCGCTGCCGCACGACCTGCTGGTGTTCGG CGAGGTCGGGCTGTCCGGCGAGGTGCGTCCGGTGCCGAGCGGCCAGGAGCGCCTGAAGGAAGCCGGCAAGCA TGGTTTCAAGCGTGCCATCGTACCCCTCGGCAACGCGCCGAAGGAGGCGCCGGCGGGATTGCAGGTGATCGC CGTGACGCGCCTCGAGCAGGCCCTGGACGCCCTCTTCGAGTGACCCGCCTCAGTCGTCGTGGGCGCTGA