ViewGene
Locus Name:
GeneID:
Location:

GeneID:6715
TrivialName: PA14_60940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60940
PAO1 Ortholog Locus:
Sequence Length:2202
Protein Length:733
Start: 5436089
Stop: 5438290
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAA39561.1| (X56082) exo-glucanase [Ruminococcus flavefaciens]
Identities = 164/588 (27%), Positives = 212/588 (36%), Gaps = 105/588 (17%)
Sequence:
GTGCTTGTTGCGCATGTGCTCGACATAGGTGTCGTAGTCGGGCATGCCGACCAGCATCCGGGCGGCCTGGCC
CAGGTATTTGCCCATGCGGCTGAGGTCGTTGAACATGGCGAGTTCCTCGTTAAGGCTCCCCGGCGAACCGGG
GAGCGCGGCCGGTCAGGCGTCGGGAATGGGCTCGAACGGGGTTTCCTTGTCGGTCCGCTCGCTCTTGCCCCA
GGCCGCGATGCCGACCTTGATGGCGTAGAACAGTACGCTGAACACCACCAGCAGGAACAGCACGGTCAGACC
GGCGTTGATGTAGGCGTTCAGCACCACGTGCTGCATCTGGCCGATATCCTTGGCCGGCGCCAGCACCTGGCC
AGCATCCAGCGCGGTGGCGTACTTCTCGCCAAGGGCGACGAAGCCGACCGCCGGGTTGCTGTCGAAGATCTT
GATCAGGCCCGCGGTGGTGGTGCAGATCAGCAGCCAGGCCGCCGGCAGGATGGTGACCCAGACATACTGCTG
GCGCTTCATCTTGATCAGGACCACGGTGGCGAGCATCAGCGCGATGCCGGCGAGCATCTGGTTGGAAATGCC
GAACAGCGGCCACAGGGTATTGATCCCACCCAGCGGGTCGACCACGCCCTGGTACAGCAGCCAGCCCCACAG
CGCCACGCAGCCGCCGGTGCCGATGATGTTGGCGGTCCACGACTCGGTCTTCTTCAGCGCCGGCACGAAGTT
GCCCAGCAGGTCCTGCAGCATGAAGCGCCCGGCACGGGTGCCGGCGTCCACCGCGGTGAGGATGAACAAGGC
CTCGAAGAGGATCGCGAAGTGGTACCAGAAGGCCATGGTGTTCTCGCCCGGCAGCACCTGGTGGAGGATGTG
CGCGATCCCCACCGCCAGGGTCGGCGCGCCGCCGGCACGGGCCAGGATGGTGGTCTCGCCGATGTCCTGGGC
GGTCTGGGTGAGTTGCTCCGGCGTGATGGCGAAGCCCCAGCTGCTGACGGTCGCGGCCACCGCGTTGACGTC
GGCGCCGACCACCGCCGGCGGGCTGTTCATGGCGAAGTAGATGCCCGGCTCGATCACCGAGGCGGCGACCAT
CGCCATGATCGCCACGAAGGACTCCATCAGCATGCCGCCGTAGCCGATGTAGCGGGCGTCGGGCTCGCGGTT
GAGCAGCTTCGGCGTGGTCCCCGAGGAGATCAGCGCGTGGAAGCCGGACACCGCGCCGCAGGCGATGGTGAT
GAACAGGAACGGGAACAGGCTGCCTTTCCAGACCGGGCCGGTGCCGTCGGTGAACTGGGTCAGGGCCGGCAT
CTTCAGATCCGGCATGACGATCAGGATGCCGATCGCCAGGCCGATGATGGTGCCGATCTTGAGGAAGGTCGA
CAGGTAGTCGCGCGGCGCCAGCAGCAGCCACACCGGCAGTACCGAGGCGACGGCGCCGTAGCCGATCAGCAT
CCAGGTGATCTGGATTCCACTGAAGGTGAAATGCGGCGCCCATTCCGGACTGGCCGCGACCTGCCCGCCGAG
CCAGATCGAACCGAGCAGGAGGAACACCCCGATGATCGAGATCTCGCCGATCCGGCCGGGGCGGATGAAGCG
CATGTAGACGCCCATGAACAGCGCGATGGGAATGGTCGCGAGGACGGTGAACATGCCCCAGGGGCTGTCGGC
CAGAGCCTTCACCACGATCAGCGCGAGCACCGCGAGGATGATGATCATGATCAGGAAGGCGCCGAACAGCGC
GATGGTCCCGGCCACCTGGCCCATTTCCTCGCGCACCAGCTCGCCCAGCGAGCGGCCGTTGCGGCGGCTGGA
GATGAACAGGACCATGAAGTCCTGCACCGCGCCGGCGAGGACTACGCCGGCGATCAGCCAGAGGGTGCCGGG
CAGGTAGCCCATCTGCGCGGCAAGGACCGGACCGACCAGCGGACCGGCGCCGGCGATGGCGGCGAAGTGGTG
GCCGAAGAGGATGTGCTTGTTGGTCGGGACGTAGTCCAGGCCATCGTTGTTGAGTACCGCGGGAGTGGCGCG
GTTGGGGTCCAGTTGCATCACCTTGCTGGCGATGAACAGGCTGTAGTAACGGTAGGCGACCAGGTAGATGGC
CACCGCCGCCACCACGATCCACAAGGCGTTGATCGCTTCGCCACGACGCAGGGCGACGACGCCCAGGGCCGC
GGCGCCCACGATCGCCACCACCAGCCAGGCGAGGTGACGTAG
Translation:
MLVAHVLDIGVVVGHADQHPGGLAQVFAHAAEVVEHGEFLVKAPRRTGERGRSGVGNGLERGFLVGPLALAP
GRDADLDGVEQYAEHHQQEQHGQTGVDVGVQHHVLHLADILGRRQHLASIQRGGVLLAKGDEADRRVAVEDL
DQARGGGADQQPGRRQDGDPDILLALHLDQDHGGEHQRDAGEHLVGNAEQRPQGIDPTQRVDHALVQQPAPQ
RHAAAGADDVGGPRLGLLQRRHEVAQQVLQHEAPGTGAGVHRGEDEQGLEEDREVVPEGHGVLARQHLVEDV
RDPHRQGRRAAGTGQDGGLADVLGGLGELLRRDGEAPAADGRGHRVDVGADHRRRAVHGEVDARLDHRGGDH
RHDRHEGLHQHAAVADVAGVGLAVEQLRRGPRGDQRVEAGHRAAGDGDEQEREQAAFPDRAGAVGELGQGRH
LQIRHDDQDADRQADDGADLEEGRQVVARRQQQPHRQYRGDGAVADQHPGDLDSTEGEMRRPFRTGRDLPAE
PDRTEQEEHPDDRDLADPAGADEAHVDAHEQRDGNGREDGEHAPGAVGQSLHHDQREHREDDDHDQEGAEQR
DGPGHLAHFLAHQLAQRAAVAAAGDEQDHEVLHRAGEDYAGDQPEGAGQVAHLRGKDRTDQRTGAGDGGEVV
AEEDVLVGRDVVQAIVVEYRGSGAVGVQLHHLAGDEQAVVTVGDQVDGHRRHHDPQGVDRFATTQGDDAQGR
GAHDRHHQPGEVT*
AnnotationID:6716GeneID:6715
AnnotatorUID: diggins
Modification Date/Time: 2004-04-04 23:11:10
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
no data found via CDD Search






   
Genomic Context:






   
Comment:


















    ReferenceID:16475




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30516




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49717How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4699769Stop: 4701970

          
Length: 2202


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGCTTGTTGCGCATGTGCTCGACATAGGTGTCGTAGTCGGGCATGCCGACCAGCATCCGGGCGGCCTGGCC 
CAGGTATTTGCCCATGCGGCTGAGGTCGTTGAACATGGCGAGTTCCTCGTTAAGGCTCCCCGGCGAACCGGG 
GAGCGCGGCCGGTCAGGCGTCGGGAATGGGCTCGAACGGGGTTTCCTTGTCGGTCCGCTCGCTCTTGCCCCA 
GGCCGCGATGCCGACCTTGATGGCGTAGAACAGTACGCTGAACACCACCAGCAGGAACAGCACGGTCAGACC 
GGCGTTGATGTAGGCGTTCAGCACCACGTGCTGCATCTGGCCGATATCCTTGGCCGGCGCCAGCACCTGGCC 
AGCATCCAGCGCGGTGGCGTACTTCTCGCCAAGGGCGACGAAGCCGACCGCCGGGTTGCTGTCGAAGATCTT 
GATCAGGCCCGCGGTGGTGGTGCAGATCAGCAGCCAGGCCGCCGGCAGGATGGTGACCCAGACATACTGCTG 
GCGCTTCATCTTGATCAGGACCACGGTGGCGAGCATCAGCGCGATGCCGGCGAGCATCTGGTTGGAAATGCC 
GAACAGCGGCCACAGGGTATTGATCCCACCCAGCGGGTCGACCACGCCCTGGTACAGCAGCCAGCCCCACAG 
CGCCACGCAGCCGCCGGTGCCGATGATGTTGGCGGTCCACGACTCGGTCTTCTTCAGCGCCGGCACGAAGTT 
GCCCAGCAGGTCCTGCAGCATGAAGCGCCCGGCACGGGTGCCGGCGTCCACCGCGGTGAGGATGAACAAGGC 
CTCGAAGAGGATCGCGAAGTGGTACCAGAAGGCCATGGTGTTCTCGCCCGGCAGCACCTGGTGGAGGATGTG 
CGCGATCCCCACCGCCAGGGTCGGCGCGCCGCCGGCACGGGCCAGGATGGTGGTCTCGCCGATGTCCTGGGC 
GGTCTGGGTGAGTTGCTCCGGCGTGATGGCGAAGCCCCAGCTGCTGACGGTCGCGGCCACCGCGTTGACGTC 
GGCGCCGACCACCGCCGGCGGGCTGTTCATGGCGAAGTAGATGCCCGGCTCGATCACCGAGGCGGCGACCAT 
CGCCATGATCGCCACGAAGGACTCCATCAGCATGCCGCCGTAGCCGATGTAGCGGGCGTCGGGCTCGCGGTT 
GAGCAGCTTCGGCGTGGTCCCCGAGGAGATCAGCGCGTGGAAGCCGGACACCGCGCCGCAGGCGATGGTGAT 
GAACAGGAACGGGAACAGGCTGCCTTTCCAGACCGGGCCGGTGCCGTCGGTGAACTGGGTCAGGGCCGGCAT 
CTTCAGATCCGGCATGACGATCAGGATGCCGATCGCCAGGCCGATGATGGTGCCGATCTTGAGGAAGGTCGA 
CAGGTAGTCGCGCGGCGCCAGCAGCAGCCACACCGGCAGTACCGAGGCGACGGCGCCGTAGCCGATCAGCAT 
CCAGGTGATCTGGATTCCACTGAAGGTGAAATGCGGCGCCCATTCCGGACTGGCCGCGACCTGCCCGCCGAG 
CCAGATCGAACCGAGCAGGAGGAACACCCCGATGATCGAGATCTCGCCGATCCGGCCGGGGCGGATGAAGCG 
CATGTAGACGCCCATGAACAGCGCGATGGGAATGGTCGCGAGGACGGTGAACATGCCCCAGGGGCTGTCGGC 
CAGAGCCTTCACCACGATCAGCGCGAGCACCGCGAGGATGATGATCATGATCAGGAAGGCGCCGAACAGCGC 
GATGGTCCCGGCCACCTGGCCCATTTCCTCGCGCACCAGCTCGCCCAGCGAGCGGCCGTTGCGGCGGCTGGA 
GATGAACAGGACCATGAAGTCCTGCACCGCGCCGGCGAGGACTACGCCGGCGATCAGCCAGAGGGTGCCGGG 
CAGGTAGCCCATCTGCGCGGCAAGGACCGGACCGACCAGCGGACCGGCGCCGGCGATGGCGGCGAAGTGGTG 
GCCGAAGAGGATGTGCTTGTTGGTCGGGACGTAGTCCAGGCCATCGTTGTTGAGTACCGCGGGAGTGGCGCG 
GTTGGGGTCCAGTTGCATCACCTTGCTGGCGATGAACAGGCTGTAGTAACGGTAGGCGACCAGGTAGATGGC 
CACCGCCGCCACCACGATCCACAAGGCGTTGATCGCTTCGCCACGACGCAGGGCGACGACGCCCAGGGCCGC 
GGCGCCCACGATCGCCACCACCAGCCAGGCGAGGTGACGTAG