ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6713

TrivialName: PA14_60880

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_60880

PAO1 Ortholog Locus:

Sequence Length: 1743

Protein Length: 580

Start: 5434877

Stop: 5433135

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAM37171.1| (AE011869) pseudouridylate synthase [Xanthomonas axonopodis pv. citri str. 306] Identities = 47/129 (36%), Positives = 51/129 (39%), Gaps = 21/129 (16%)

Sequence:

GTGCATCCGTGGCGCGGACAAATCCTGGGTGCTGTTCGCCCAGGGCACTTGCGTGATCCTCACGCAGCCGGA
GCCGGACCTCGCGGCCCAGGCGCGGGCATTGCTGGCCGAGTGGGGAGCGGTACAGGTCGGCACGCCGGCGGG
CGACTTCGGCGTGATCACCCTGGACAACGGCCGCGGCTGGGTGGTGACCGGGCATCACCCGGACATCCTTAC
CTTCGTCCCTCGCGAGGAACTGGAGGAGGACGCCGGCGAGCTGCTCGTCGGCATGCACGGCCGCTCCCGGCG
GGGCGAGGATGCCGAGGCCTTGGCGGTGATCCATGTCGAGGACCGGCGATAACGCTACCCGGCGCCTCCTTC
CTCGGAGGAAATGAAAAAGCCCGGCATTTGCCGGGCTCTTTCGTCTTGCCTTGTCGCTTAGTTGCCGTAGAC
CGGGAACTTGGCGCAGATCGCCTTGACCTTCTCGCGTACGCCGTTGACCACGGACTCGTCGCCCATGTTCTC
GAGGATGTCGCAGATCCAGCCGGCCAGCTCGCGGCACTCGGCTTCCTTGAAGCCGCGGGTGGTCACGGCCGG
GGTACCGATGCGCAGGCCGGAGGTGACGAACGGCGAGCGCGGGTCGTTCGGGACCGAGTTCTTGTTCACGGT
GATGAACGCGCGGCCGAGGGCGGCGTCGGCGTCTTTGCCGGTGATGTCCTGCTTGATCAGGGAGAGCAGGAA
CAGGTGGTTCTGGGTGCCGCCGGAAACCACGTCGAAACCGCGGTCGAGGAAGACCTGGGCCATGGTCTGGGC
GTTCTTCAGGACCTGCTGCTGGTAGGTCTTGAACTCCGGCTGCAGGGCTTCCTTGAAGCACACCGCCTTGGC
CGCGATCACGTGCTCCAGCGGACCGCCCTGGGCGCCGGGGAATACCGCGGAGTTGAGCTTCTTCTCGATCTC
CTCGTTGGCGCGCGCCAGGATCAGGCCACCGCGCGGACCGCGCAGGGTCTTGTGGGTGGTGGTGGTGACCAC
GTCGGCGAACGGCACCGGGTTCGGGTAGACGCCAGCGGCGACCAGGCCGGCGACGTGGGCCATGTCGACGAA
CAGGTAGGCGCCGACCTTGTCGGCGATGGCGCGGAAGCGGGCGAAATCGAGGACCTGGGAATAGGCGGAGAA
GCCGGCGACGATCATCTTCGGCTTGTGCTCCACGGCCAGGCGCTCGACTTCGTCGTAGTCGATCAGGCCATT
GGCGTCGATGCCGTACTGCACGGCGTTGTACAGCTTGCCGGAGGAGGAGACGCTGGCGCCGTGGGTCAGGTG
GCCGCCGTGGGCCAGGCTCATGCCGAGGATGGTGTCGCCGGCCGACAGCAGGGCCAGGTAGACCGCGGCGTT
GGCCTGGGAGCCGGCGTGCGGCTGGACGTTGGCGTAATCGGCGCCGAACAGTTGCTTGGCGCGGTCGATGGC
CAGTTGCTCGACGATATCGACGTACTCGCAGCCGCCGTAGTAGCGCTTGTGCGGATAACCTTCGGCGTACTT
GTTGGTCAGCACCGAACCCTGGGCTTCCATCACCGCCGGGCTGGTGTAGTTCTCGGAGGCGATCAGCTCGAT
GTGCTCTTCCTGGCGCTGGGCTTCCTGCTCCATCGCGGCAAAGAGTTCGGCATCGTAGCGGGCGAGGGTCAA
ATCACGGCTGAACATGGCGGTCCTCATAAGGATCGGTGCTGGGAAAAGGCGCGCATTCTAACCCATGCGGCG
GGTGCTGGCACATGA

Translation:

MHPWRGQILGAVRPGHLRDPHAAGAGPRGPGAGIAGRVGSGTGRHAGGRLRRDHPGQRPRLGGDRASPGHPY
LRPSRGTGGGRRRAARRHARPLPAGRGCRGLGGDPCRGPAITLPGASFLGGNEKARHLPGSFVLPCRLVAVD
RELGADRLDLLAYAVDHGLVAHVLEDVADPAGQLAALGFLEAAGGHGRGTDAQAGGDERRARVVRDRVLVHG
DERAAEGGVGVFAGDVLLDQGEQEQVVLGAAGNHVETAVEEDLGHGLGVLQDLLLVGLELRLQGFLEAHRLG
RDHVLQRTALGAGEYRGVELLLDLLVGARQDQATARTAQGLVGGGGDHVGERHRVRVDASGDQAGDVGHVDE
QVGADLVGDGAEAGEIEDLGIGGEAGDDHLRLVLHGQALDFVVVDQAIGVDAVLHGVVQLAGGGDAGAVGQV
AAVGQAHAEDGVAGRQQGQVDRGVGLGAGVRLDVGVIGAEQLLGAVDGQLLDDIDVLAAAVVALVRITFGVL
VGQHRTLGFHHRRAGVVLGGDQLDVLFLALGFLLHRGKEFGIVAGEGQITAEHGGPHKDRCWEKARILTHAA
GAGT*

AnnotationID:6714 GeneID:6713

AnnotatorUID: diggins

Modification Date/Time: 2004-04-05 12:12:27

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16473

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30513

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31620

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6713_cdd.html

URL:

GC ORFID: `49715`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `4698557`	Stop: `4696815`
Length: `1743`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGCATCCGTGGCGCGGACAAATCCTGGGTGCTGTTCGCCCAGGGCACTTGCGTGATCCTCACGCAGCCGGA GCCGGACCTCGCGGCCCAGGCGCGGGCATTGCTGGCCGAGTGGGGAGCGGTACAGGTCGGCACGCCGGCGGG CGACTTCGGCGTGATCACCCTGGACAACGGCCGCGGCTGGGTGGTGACCGGGCATCACCCGGACATCCTTAC CTTCGTCCCTCGCGAGGAACTGGAGGAGGACGCCGGCGAGCTGCTCGTCGGCATGCACGGCCGCTCCCGGCG GGGCGAGGATGCCGAGGCCTTGGCGGTGATCCATGTCGAGGACCGGCGATAACGCTACCCGGCGCCTCCTTC CTCGGAGGAAATGAAAAAGCCCGGCATTTGCCGGGCTCTTTCGTCTTGCCTTGTCGCTTAGTTGCCGTAGAC CGGGAACTTGGCGCAGATCGCCTTGACCTTCTCGCGTACGCCGTTGACCACGGACTCGTCGCCCATGTTCTC GAGGATGTCGCAGATCCAGCCGGCCAGCTCGCGGCACTCGGCTTCCTTGAAGCCGCGGGTGGTCACGGCCGG GGTACCGATGCGCAGGCCGGAGGTGACGAACGGCGAGCGCGGGTCGTTCGGGACCGAGTTCTTGTTCACGGT GATGAACGCGCGGCCGAGGGCGGCGTCGGCGTCTTTGCCGGTGATGTCCTGCTTGATCAGGGAGAGCAGGAA CAGGTGGTTCTGGGTGCCGCCGGAAACCACGTCGAAACCGCGGTCGAGGAAGACCTGGGCCATGGTCTGGGC GTTCTTCAGGACCTGCTGCTGGTAGGTCTTGAACTCCGGCTGCAGGGCTTCCTTGAAGCACACCGCCTTGGC CGCGATCACGTGCTCCAGCGGACCGCCCTGGGCGCCGGGGAATACCGCGGAGTTGAGCTTCTTCTCGATCTC CTCGTTGGCGCGCGCCAGGATCAGGCCACCGCGCGGACCGCGCAGGGTCTTGTGGGTGGTGGTGGTGACCAC GTCGGCGAACGGCACCGGGTTCGGGTAGACGCCAGCGGCGACCAGGCCGGCGACGTGGGCCATGTCGACGAA CAGGTAGGCGCCGACCTTGTCGGCGATGGCGCGGAAGCGGGCGAAATCGAGGACCTGGGAATAGGCGGAGAA GCCGGCGACGATCATCTTCGGCTTGTGCTCCACGGCCAGGCGCTCGACTTCGTCGTAGTCGATCAGGCCATT GGCGTCGATGCCGTACTGCACGGCGTTGTACAGCTTGCCGGAGGAGGAGACGCTGGCGCCGTGGGTCAGGTG GCCGCCGTGGGCCAGGCTCATGCCGAGGATGGTGTCGCCGGCCGACAGCAGGGCCAGGTAGACCGCGGCGTT GGCCTGGGAGCCGGCGTGCGGCTGGACGTTGGCGTAATCGGCGCCGAACAGTTGCTTGGCGCGGTCGATGGC CAGTTGCTCGACGATATCGACGTACTCGCAGCCGCCGTAGTAGCGCTTGTGCGGATAACCTTCGGCGTACTT GTTGGTCAGCACCGAACCCTGGGCTTCCATCACCGCCGGGCTGGTGTAGTTCTCGGAGGCGATCAGCTCGAT GTGCTCTTCCTGGCGCTGGGCTTCCTGCTCCATCGCGGCAAAGAGTTCGGCATCGTAGCGGGCGAGGGTCAA ATCACGGCTGAACATGGCGGTCCTCATAAGGATCGGTGCTGGGAAAAGGCGCGCATTCTAACCCATGCGGCG GGTGCTGGCACATGA