ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6700

TrivialName: PA14_60170

AnnotatorUID: danlee

Modification Date/Time: 2006-04-14 15:03:38

LocusName: PA14_60170

PAO1 Ortholog Locus:

Sequence Length: 2904

Protein Length: 967

Start: 5359557

Stop: 5362460

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAD00219.1| (U73653) 63 kDa protein [Mycobacterium bovis] Identities = 213/525 (40%), Positives = 272/525 (51%), Gaps = 11/525 (2%)

Sequence:

TTGGAATTTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACCGACTG
AGCTATCGCGGAACGTCTTTCTTCCAACCCTGGACGCTTCCGGTGTTGCTGGATTCGCGTCTCAGAGGCGCG
CCATTTTACGGATGCGCGCGGGCATGTCAACCCTCTGATCCAAAAAGTTTTTCTTCTTTTTCCACGAGCGAC
AAAACGGCCCTTCCACTGCATGCGGCAGCGCTCTCGCGCCTACCGGACGCCCATGAAAAAGCCCCGCCGAAG
CGGGGCTTTCCCTGTCCGCCCCCGAAGAGGTCAGGCGAAGACGATCTCGTCGCCTTCCACCTTCGCCGAGAT
ACTGGCACCCGGCGCGAATTTGCCGGCCAGGATCAGTTGCGCCAGCGGGTTCTCGATCCAGCGCTGGATGGC
CCGCTTCAGCGGGCGTGCGCCATAGACCGGGTCGAAGCCGACGGCAATCAGCTTGTCCAGCGCCTCCTGGCT
CAGTTCCAGGCTCAGCTCGCGCTCGGCCAGGCGCTTGCGCAGGCGACCGAGCTGGATCTCGGCGATGCCGGC
GATCTGCTCGCGAGCCAGCGGCTCGAACACCACCACTTCGTCGATCCGGTTGATGAATTCCGGACGGAAGTG
CGCATTGACCGCGTCCATCACTGCGGCACGTTGCGCCTCGCGGTCGCCGGCCAGCTCCTGGATCTGCGCCGA
ACCGAGGTTGGAGGTCATCACCACCACGGTGTTGCGGAAGTCCACCGTACGCCCGTGACTGTCGGTCAGGCG
TCCGTCCTCGAGCACCTGGAGGAGAATGTTGAATACATCCGGATGGGCCTTCTCCACCTCGTCCAGCAGCAC
CACCGAGTAGGGCTTGCGGCGGATCGCCTCGGTCAGGTAGCCGCCTTCCTCGAAGCCGACGTAGCCCGGAGG
CGCGCCGATCAGGCGGGCCACCGAGTGTTTCTCCATGAACTCGGACATATCTATCCGCACCAGCGCCTCCTC
GGTATCGAAGAGGAACTCGGCCAGCGCCTTGCACAACTCGGTCTTGCCCACCCCGGTCGGGCCGAGGAAGAG
GAACGAGCCGCTCGGCCGGTTCGGATCGGCGAGGCCGGCGCGCGAACGGCGCACGGCGTTGGACACGGCGAC
TACCGCCTCGTCCTGGCCGATCACTCGCCGATGCAGCTCCTGCTCCATGCGCAGCAGCTTCTCGCGCTCGCC
CTCGAGCATCTTCGACACCGGGATACCGGTCCACTTGGAAACCACTTCGGCGATTTCCTCGTCGGTCACCTT
GTTGCGCAGCAACTGGTTCTCGGTCTTGCCGTGCTGGTCGACCATCTGCAGGCTGCGTTCCAGGTCCGGGAT
GGTCTGGTACTGGATGCGCGCCATGCTCTCGAGGTCGCCCTTGCGCCGCGCCGCCTCCATCTCCTGCTTGGC
CTGCTCGATCTTCTGCTGGATCTGCGCCGAGCCCTGCACCTCGGCCTTCTCGGACTTCCAGATCTCCTCGAG
GTCGGCGTATTCGCGCTCGAGCTTGACGATATCCTCCTCCAGCTTGGCCAGGCGCTTCCTGGTGGCTTCGTC
GTCTTCCTTCTTCAGCGCCTCGCGCTCGATCTTCAGCTGGATCAGGCGACGGTCGAGACGATCCAGTTCCTC
CGGCTTGGAGTCGATCTCCATGCGGATGCGGCTGGCGGCCTCGTCGATCAGGTCGATGGCCTTGTCCGGCAG
TTGCCGATCGGTGATGTAGCGGTGCGACAGCTTGGCCGCGGCGATGATCGCGCCGTCGGTGATGCTCACCCC
GTGGTGCACTTCATAGCGTTCCTTGAGGCCACGGAGGATGGCGATGGTGTCTTCCTCGCTCGGTTCGTCCAC
CAGCACCTTCTGGAAGCGGCGCTCCAGCGCGGCATCCTTCTCGATGTACTGGCGATACTCGTCGAGGGTAGT
AGCACCGACGCAGTGCAGCTCGCCGCGCGCCAGAGCCGGCTTGAGCATGTTGCCGGCGTCCATGGCACCTTC
CGCCTTGCCGGCGCCGACCATGGTGTGCAGTTCGTCGATGAACAGGATGACCCGGCCTTCCTGCTTGCCCAG
TTCGTTGAGGACCGCCTTCAGGCGTTCCTCGAACTCGCCGCGGAACTTGGCACCGGCGATCAGCGCCCCCAT
GTCCAGGGCCAGCAGGCGCTTGTCCTTGAGGCCGTCCGGCACTTCGCCGTTGATGATGCGCTGGGCCAGGCC
CTCGACGATGGCGGTCTTGCCGACGCCGGGTTCGCCGATCAGCACCGGGTTGTTCTTGGTCCGCCGCTGCAG
GACCTGGATGGTCCGGCGGATCTCGTCGTCGCGACCGATCACCGGGTCGAGCTTGCCTTCCTCGGCGCGCTT
GGTCATGTCGACGGTGTACTTGTCCAGCGCCTGGCGCGACTCCTCGACGTTCGGGTCGTTCACCGCTTCGCC
GCCACGCAGGTTGGCCACGGCATTCTCCAGCGCCTTGCGCGACACGCCCTGGCCGAGCAGCAGCTTGCCGAG
CCTGGTGTTCTCGTCCATCGCGGCCAGCAATACCAGCTCGCTGGAGATGAACTGGTCGCCCTTCTGCTGGGC
CAGGCGGTCAGCCTGGTTGAGCAGGCGTGCGAGATCCTGGGACAGGTTCACGTCGCCGGTCGGGCTCTGGAT
CTTCGGCAGCGCGTCGAGTTCTTTGTTGAGGCCGCTGCGCAGGGCGGCGATATCGAAGCCGACCTGCATCAG
CAGGGGCTTGATCGAACCGCCTTGCTGCTCGAGCAGGGCGGAAAGCAGGTGCACCGGCTCGATGGCCGGATG
GTCATGGCCAACGGCCAGGGACTGGGCGTCGGAGAGCGCCAGTTGCAGCTTGCTGGTCAAACGGTCTATTCG
CATGGGTCGTCCTTCCTTCTATAG

Translation:

MEFGSATWTRTRDPMINSHLLYRLSYRGTSFFQPWTLPVLLDSRLRGAPFYGCARACQPSDPKSFSSFSTSD
KTALPLHAAALSRLPDAHEKAPPKRGFPCPPPKRSGEDDLVAFHLRRDTGTRREFAGQDQLRQRVLDPALDG
PLQRACAIDRVEADGNQLVQRLLAQFQAQLALGQALAQATELDLGDAGDLLASQRLEHHHFVDPVDEFRTEV
RIDRVHHCGTLRLAVAGQLLDLRRTEVGGHHHHGVAEVHRTPVTVGQASVLEHLEENVEYIRMGLLHLVQQH
HRVGLAADRLGQVAAFLEADVARRRADQAGHRVFLHELGHIYPHQRLLGIEEELGQRLAQLGLAHPGRAEEE
ERAARPVRIGEAGARTAHGVGHGDYRLVLADHSPMQLLLHAQQLLALALEHLRHRDTGPLGNHFGDFLVGHL
VAQQLVLGLAVLVDHLQAAFQVRDGLVLDARHALEVALAPRRLHLLLGLLDLLLDLRRALHLGLLGLPDLLE
VGVFALELDDILLQLGQALPGGFVVFLLQRLALDLQLDQATVETIQFLRLGVDLHADAAGGLVDQVDGLVRQ
LPIGDVAVRQLGRGDDRAVGDAHPVVHFIAFLEATEDGDGVFLARFVHQHLLEAALQRGILLDVLAILVEGS
STDAVQLAARQSRLEHVAGVHGTFRLAGADHGVQFVDEQDDPAFLLAQFVEDRLQAFLELAAELGTGDQRPH
VQGQQALVLEAVRHFAVDDALGQALDDGGLADAGFADQHRVVLGPPLQDLDGPADLVVATDHRVELAFLGAL
GHVDGVLVQRLARLLDVRVVHRFAATQVGHGILQRLARHALAEQQLAEPGVLVHRGQQYQLAGDELVALLLG
QAVSLVEQACEILGQVHVAGRALDLRQRVEFFVEAAAQGGDIEADLHQQGLDRTALLLEQGGKQVHRLDGRM
VMANGQGLGVGERQLQLAGQTVYSHGSSFLL*

AnnotationID:6701 GeneID:6700

AnnotatorUID: diggins

Modification Date/Time: 2005-05-05 05:05:32

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAD00219.1| (U73653) 63 kDa protein [Mycobacterium bovis]
          Length = 586

 Score =  314 bits (805), Expect = 2e-84
 Identities = 213/525 (40%), Positives = 272/525 (51%), Gaps = 11/525 (2%)

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:16459

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30488

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:6700

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

201514 gb|AAD00219.1| (U73653) 63 kDa protein [Mycobacterium bovis] 1003 23.62 30.50 453 814.0

GC ORFID: `49702`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `4623236`	Stop: `4626139`
Length: `2904`
Start Codon: `TTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `psyr_15may02_Scaffold2_revised_gene3553 related to: gi\|4098132\|gb\|AAD00219.1\| (U73653) 63 kDa protein [Mycobacterium bovis]`	Homolog Bit Score `864.0`
Other Homologs: `psyr_15may02_Scaffold2_revised_gene3553 related to: gi\|4098132\|gb\|AAD00219.1\| (U73653) 63 kDa protein [Mycobacterium bovis] (BLASTP 864)`
GC ORF Sequence
TTGGAATTTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACCGACTG AGCTATCGCGGAACGTCTTTCTTCCAACCCTGGACGCTTCCGGTGTTGCTGGATTCGCGTCTCAGAGGCGCG CCATTTTACGGATGCGCGCGGGCATGTCAACCCTCTGATCCAAAAAGTTTTTCTTCTTTTTCCACGAGCGAC AAAACGGCCCTTCCACTGCATGCGGCAGCGCTCTCGCGCCTACCGGACGCCCATGAAAAAGCCCCGCCGAAG CGGGGCTTTCCCTGTCCGCCCCCGAAGAGGTCAGGCGAAGACGATCTCGTCGCCTTCCACCTTCGCCGAGAT ACTGGCACCCGGCGCGAATTTGCCGGCCAGGATCAGTTGCGCCAGCGGGTTCTCGATCCAGCGCTGGATGGC CCGCTTCAGCGGGCGTGCGCCATAGACCGGGTCGAAGCCGACGGCAATCAGCTTGTCCAGCGCCTCCTGGCT CAGTTCCAGGCTCAGCTCGCGCTCGGCCAGGCGCTTGCGCAGGCGACCGAGCTGGATCTCGGCGATGCCGGC GATCTGCTCGCGAGCCAGCGGCTCGAACACCACCACTTCGTCGATCCGGTTGATGAATTCCGGACGGAAGTG CGCATTGACCGCGTCCATCACTGCGGCACGTTGCGCCTCGCGGTCGCCGGCCAGCTCCTGGATCTGCGCCGA ACCGAGGTTGGAGGTCATCACCACCACGGTGTTGCGGAAGTCCACCGTACGCCCGTGACTGTCGGTCAGGCG TCCGTCCTCGAGCACCTGGAGGAGAATGTTGAATACATCCGGATGGGCCTTCTCCACCTCGTCCAGCAGCAC CACCGAGTAGGGCTTGCGGCGGATCGCCTCGGTCAGGTAGCCGCCTTCCTCGAAGCCGACGTAGCCCGGAGG CGCGCCGATCAGGCGGGCCACCGAGTGTTTCTCCATGAACTCGGACATATCTATCCGCACCAGCGCCTCCTC GGTATCGAAGAGGAACTCGGCCAGCGCCTTGCACAACTCGGTCTTGCCCACCCCGGTCGGGCCGAGGAAGAG GAACGAGCCGCTCGGCCGGTTCGGATCGGCGAGGCCGGCGCGCGAACGGCGCACGGCGTTGGACACGGCGAC TACCGCCTCGTCCTGGCCGATCACTCGCCGATGCAGCTCCTGCTCCATGCGCAGCAGCTTCTCGCGCTCGCC CTCGAGCATCTTCGACACCGGGATACCGGTCCACTTGGAAACCACTTCGGCGATTTCCTCGTCGGTCACCTT GTTGCGCAGCAACTGGTTCTCGGTCTTGCCGTGCTGGTCGACCATCTGCAGGCTGCGTTCCAGGTCCGGGAT GGTCTGGTACTGGATGCGCGCCATGCTCTCGAGGTCGCCCTTGCGCCGCGCCGCCTCCATCTCCTGCTTGGC CTGCTCGATCTTCTGCTGGATCTGCGCCGAGCCCTGCACCTCGGCCTTCTCGGACTTCCAGATCTCCTCGAG GTCGGCGTATTCGCGCTCGAGCTTGACGATATCCTCCTCCAGCTTGGCCAGGCGCTTCCTGGTGGCTTCGTC GTCTTCCTTCTTCAGCGCCTCGCGCTCGATCTTCAGCTGGATCAGGCGACGGTCGAGACGATCCAGTTCCTC CGGCTTGGAGTCGATCTCCATGCGGATGCGGCTGGCGGCCTCGTCGATCAGGTCGATGGCCTTGTCCGGCAG TTGCCGATCGGTGATGTAGCGGTGCGACAGCTTGGCCGCGGCGATGATCGCGCCGTCGGTGATGCTCACCCC GTGGTGCACTTCATAGCGTTCCTTGAGGCCACGGAGGATGGCGATGGTGTCTTCCTCGCTCGGTTCGTCCAC CAGCACCTTCTGGAAGCGGCGCTCCAGCGCGGCATCCTTCTCGATGTACTGGCGATACTCGTCGAGGGTAGT AGCACCGACGCAGTGCAGCTCGCCGCGCGCCAGAGCCGGCTTGAGCATGTTGCCGGCGTCCATGGCACCTTC CGCCTTGCCGGCGCCGACCATGGTGTGCAGTTCGTCGATGAACAGGATGACCCGGCCTTCCTGCTTGCCCAG TTCGTTGAGGACCGCCTTCAGGCGTTCCTCGAACTCGCCGCGGAACTTGGCACCGGCGATCAGCGCCCCCAT GTCCAGGGCCAGCAGGCGCTTGTCCTTGAGGCCGTCCGGCACTTCGCCGTTGATGATGCGCTGGGCCAGGCC CTCGACGATGGCGGTCTTGCCGACGCCGGGTTCGCCGATCAGCACCGGGTTGTTCTTGGTCCGCCGCTGCAG GACCTGGATGGTCCGGCGGATCTCGTCGTCGCGACCGATCACCGGGTCGAGCTTGCCTTCCTCGGCGCGCTT GGTCATGTCGACGGTGTACTTGTCCAGCGCCTGGCGCGACTCCTCGACGTTCGGGTCGTTCACCGCTTCGCC GCCACGCAGGTTGGCCACGGCATTCTCCAGCGCCTTGCGCGACACGCCCTGGCCGAGCAGCAGCTTGCCGAG CCTGGTGTTCTCGTCCATCGCGGCCAGCAATACCAGCTCGCTGGAGATGAACTGGTCGCCCTTCTGCTGGGC CAGGCGGTCAGCCTGGTTGAGCAGGCGTGCGAGATCCTGGGACAGGTTCACGTCGCCGGTCGGGCTCTGGAT CTTCGGCAGCGCGTCGAGTTCTTTGTTGAGGCCGCTGCGCAGGGCGGCGATATCGAAGCCGACCTGCATCAG CAGGGGCTTGATCGAACCGCCTTGCTGCTCGAGCAGGGCGGAAAGCAGGTGCACCGGCTCGATGGCCGGATG GTCATGGCCAACGGCCAGGGACTGGGCGTCGGAGAGCGCCAGTTGCAGCTTGCTGGTCAAACGGTCTATTCG CATGGGTCGTCCTTCCTTCTATAG