ViewGene
Locus Name:
GeneID:
Location:

GeneID:6696
TrivialName: PA14_59740
AnnotatorUID: urbach
Modification Date/Time:2006-07-03 16:04:32
LocusName:PA14_59740
PAO1 Ortholog Locus:
Sequence Length:2412
Protein Length:803
Start: 5315096
Stop: 5317507
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84169.1| (AY273869) putative fimbrial biogenesis usher protein [Pseudomonas aeruginosa]
Identities = 763/764 (99%), Positives = 763/764 (99%)
Sequence:
ATGTCTATCTCAACGGCAGCTACGCCAGTCGCACCAGGATCGAGTTCCGCCCCCGGGCCGGCGGCGTCAAAC
CCTGCTTCGGCGAACGCTTCTTGCGCCGGACGCTGGGCGTCCGCCCCgcccTCTGAGGCCGGCGTGCAAGCG
CCTGGAGATTGCCTGGGGCTGGAAGAACGCCTGCCAGGCTCGACCTTCAATCTCGACACCGCCCTTCTGCGC
CTCGATCTCTCGGTGCCCCAGGCCCTGCTGGATATCAAGCCACGCGGCTACGTGGGTCCCGACGAGTGGGAC
GCTGGCAGTAGCATGGGCTTCGTCAACTACGACGCCAGCTTCTATCGCTCGAGCTTCGACGGAGTAGGCGGC
AACGGCGACTCGGACTATGGCTACCTGGGGCTGAGCGGGGGCATCAATTTCGGCCTGTGGCGCCTGCGCCAC
CAGTCCAACTACAGCTACTCCAGCTATGCGGGAAACACCCGCAGCGACTGGAACAGCATCCGCACCTATGCC
CAGCGCGCGGTGCCAGGCCTGCGCAGCGAACTGACCCTGGGCGAGAGCTTCACCGAGGGCAATCTGTTCGGC
AGCCTGGGTTATCGCGGCGTGCGCCTGGCCAGCGACGACCGCATGCTGGCAGACTCGCAACGCCGCTATGCT
CCACAGGTACGCGGTACAGCGAACAGCAACGCACGGGTGGTCATCAGCCAGAACGGCAAGAAGGTCCACGAA
TCCGCCGTCGCTCCCGGTCCCTTCGTCATCAACGACCTCTATGGCACCGCCTACGACGGCGATCTGGATGTC
CAAGTGATTGAGGCCGACGGCAGCGTCTCGCGCTTTTCCGTGCCCTTTTCCGCGGTTCCCGAATCCATGCGC
CCGGGCATCTCGCGCTACAGCGCCACCCTCGGCCAAGCGCGCCAGTATGGCGACGGCAACGACCTGTTCGGC
GACTTCACCTATCAGCGCGGCCTGACCAACTCGCTAACCGCCAACCTCGGCTCGCGCCTGGCCGAGGACTAT
CTGGCGCTGCTCGGCGGAGGCGTGCTCGCCACGCCCTACGGAGCCTTCGGCTTCAACAGCATCTTTTCCCAT
GCCACGGTGGAGAACGGCCAGCGCAAGCAGGGCTGGCGTGTCGGTCTGAACTACAGCCGGACCTTCCAGCCG
ACCCAGACCACTCTCACCCTGGCTGGCTACCGCTATTCCACCGAGGGCTATCGCGACCTCGGCGACGCGCTT
TCGGCGCGCCACGCCGATGAGCACAACGACTCCTGGAACTCCAGCAGCTACAAGCAACGCAACCAGTTCACC
CTGCTGGTCAACCAGGGCCTGGGGGGCTACGGCAACCTGTATCTGTCCGGAGCCACCAGCGACTACTACGAC
GGCAAGAGCCGCGACACCCAGTTGCAGTTCGGCTACAGCAACACTTGGCGCCAGCTCAGCTACAACCTCGCC
TATTCGCGCCAGCAGACCACCTGGTACCGCGATCTGAACGACGACTACGACCCGTCACTGCCGCCGCAATAC
AACCTGCGGCACGGCAGCGAACGTAGCAACACCTTAACCCTGACACTTTCCATGCCGCTGGGGTCCTCCAGC
CAGGCCCCGAATCTCAGCGCGATGGCCTCCCGGCGTTCCGGCGACAGCCGCGGCAGCAGCTACCAGACGGGC
CTCAACGGCACCCTCGACGAAGACCGCAGCCTGAGCTACGCGATTGCCGCCGGGCGCGACAGCGACAACCAC
GGCAGCGATTTCAACGGCAGTCTGCAGAAACAGACCTCGGTGGCGACGCTGAACGCCGGCTATGCCGAGAAC
AGCAGCTACCGGCAGCTCAACACCGGCCTGCGCGGCGCCGCCGTGCTGCATCGCGGCGGCCTGACCCTCGGC
CCCTACGTCGGCGACACTTTCGCCCTGGTCGAGGCCAAGGGCGCCAGCGGAGCTGGCGTACGCGGTGGTCAG
GGCGCGCGCGTCAACGGCAATGGCTACGCCGTGGTGCCATCACTCTCGCCCTACCGCTACAACCCGGTCAGC
CTCGATCCGCAGGGCATGGGCGAAGAGGCCGAGCTGCTGGAGACCGAGCGCAAGATCGCGCCATACGCCGGC
GCCGCCGTGCATGTGAAGTTCCGCACACTGACCGGTCACCCATTGCTAATCCAGGCCCAACTCGCCGACGGC
AGCGCGCTACCGCTAGGGGCCAATGTGCTCGACAGCCAGGGTGTGAACATCGGCATGGTCGGTCAAGGCGGC
CAGGTCTATGCCCGCGCCGAGGGCGACAAGGGCCGCCTGCGCGTGCAATGGAGCGAACGCCCAGGGGACGCC
TGTCTGCTGGATTACGACCTCGACACTGGCCCTCGCCAGGCTATCGAACCCGGACAGGCGGTGATCCGCCTG
CAGGGCACCTGCACGCCCGTCTCGGAGGCACCATGA
Translation:
MSISTAATPVAPGSSSAPGPAASNPASANASCAGRWASAPPSEAGVQAPGDCLGLEERLPGSTFNLDTALLR
LDLSVPQALLDIKPRGYVGPDEWDAGSSMGFVNYDASFYRSSFDGVGGNGDSDYGYLGLSGGINFGLWRLRH
QSNYSYSSYAGNTRSDWNSIRTYAQRAVPGLRSELTLGESFTEGNLFGSLGYRGVRLASDDRMLADSQRRYA
PQVRGTANSNARVVISQNGKKVHESAVAPGPFVINDLYGTAYDGDLDVQVIEADGSVSRFSVPFSAVPESMR
PGISRYSATLGQARQYGDGNDLFGDFTYQRGLTNSLTANLGSRLAEDYLALLGGGVLATPYGAFGFNSIFSH
ATVENGQRKQGWRVGLNYSRTFQPTQTTLTLAGYRYSTEGYRDLGDALSARHADEHNDSWNSSSYKQRNQFT
LLVNQGLGGYGNLYLSGATSDYYDGKSRDTQLQFGYSNTWRQLSYNLAYSRQQTTWYRDLNDDYDPSLPPQY
NLRHGSERSNTLTLTLSMPLGSSSQAPNLSAMASRRSGDSRGSSYQTGLNGTLDEDRSLSYAIAAGRDSDNH
GSDFNGSLQKQTSVATLNAGYAENSSYRQLNTGLRGAAVLHRGGLTLGPYVGDTFALVEAKGASGAGVRGGQ
GARVNGNGYAVVPSLSPYRYNPVSLDPQGMGEEAELLETERKIAPYAGAAVHVKFRTLTGHPLLIQAQLADG
SALPLGANVLDSQGVNIGMVGQGGQVYARAEGDKGRLRVQWSERPGDACLLDYDLDTGPRQAIEPGQAVIRL
QGTCTPVSEAP*
AnnotationID:6697GeneID:6696
AnnotatorUID: jianxin
Modification Date/Time: 2004-03-08 12:12:40
Gene Name:cupD3
Confidence Code:5
GeneProduct:putative fimbrial biogenesis usher protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3188, pfam00577
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
RL042, PA2130






 
Structural Features:






   
Genomic Context:
cupD cluster






   
Comment:


















    ReferenceID:13146




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17056




  
Author/Investigator(s):
        





  
Title:
        CDD research




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:NCBI CD-6697.htm


    		




 
URL:

















    ReferenceID:30480




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6696
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
201491
                           gb|AAP84169.1|
                           (AY273869) putative fimbrial biogenesis usher protein [Pseudomonas aeruginosa]
                           870
                           88.85
                           89.08
                           67
                           3978.0
     

     
     
8026
                           PA2130_tr
                           translation of PA2130
                           888
                           60.13
                           70.38
                           101
                           2734.0
     

     
     
201492
                           gb|AAG05518.1|AE004640_7
                           (AE004640) usher CupA3 [Pseudomonas aeruginosa PAO1]
                           888
                           60.13
                           70.38
                           101
                           2734.0
     

     
     
201493
                           gb|AAM83940.1|AE013635_5
                           (AE013635) outer membrane usher protein FIMD precursor [Yersinia pestis KIM]
                           906
                           43.81
                           59.16
                           134
                           1950.0
     

     
     
201494
                           emb|CAC93346.1|
                           (AJ414159) putative outer membrane usher protein [Yersinia pestis CO92]
                           906
                           43.81
                           59.16
                           134
                           1950.0
     

     






      

          
GC ORFID: 49698How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4578775Stop: 4581186

          
Length: 2412


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL042 CupA3 870 Homolog: PA2130 / Probable fimbrial biogenesis usher protein / Biofilm-related / P.aeruginosa / PA01 (AAG05518) translation of RL042Homolog Bit Score 1540.0

          
Other Homologs:  t_RL042 CupA3 870 Homolog: PA2130 / Probable fimbrial biogenesis usher protein / Biofilm-related / P.aeruginosa / PA01 (AAG05518) translation of RL042 (BLASTP 1540), t_PA2130 translation of PA2130 (BLASTP 1057)

          
GC ORF Sequence

           
ATGTCTATCTCAACGGCAGCTACGCCAGTCGCACCAGGATCGAGTTCCGCCCCCGGGCCGGCGGCGTCAAAC 
CCTGCTTCGGCGAACGCTTCTTGCGCCGGACGCTGGGCGTCCGCCCCgcccTCTGAGGCCGGCGTGCAAGCG 
CCTGGAGATTGCCTGGGGCTGGAAGAACGCCTGCCAGGCTCGACCTTCAATCTCGACACCGCCCTTCTGCGC 
CTCGATCTCTCGGTGCCCCAGGCCCTGCTGGATATCAAGCCACGCGGCTACGTGGGTCCCGACGAGTGGGAC 
GCTGGCAGTAGCATGGGCTTCGTCAACTACGACGCCAGCTTCTATCGCTCGAGCTTCGACGGAGTAGGCGGC 
AACGGCGACTCGGACTATGGCTACCTGGGGCTGAGCGGGGGCATCAATTTCGGCCTGTGGCGCCTGCGCCAC 
CAGTCCAACTACAGCTACTCCAGCTATGCGGGAAACACCCGCAGCGACTGGAACAGCATCCGCACCTATGCC 
CAGCGCGCGGTGCCAGGCCTGCGCAGCGAACTGACCCTGGGCGAGAGCTTCACCGAGGGCAATCTGTTCGGC 
AGCCTGGGTTATCGCGGCGTGCGCCTGGCCAGCGACGACCGCATGCTGGCAGACTCGCAACGCCGCTATGCT 
CCACAGGTACGCGGTACAGCGAACAGCAACGCACGGGTGGTCATCAGCCAGAACGGCAAGAAGGTCCACGAA 
TCCGCCGTCGCTCCCGGTCCCTTCGTCATCAACGACCTCTATGGCACCGCCTACGACGGCGATCTGGATGTC 
CAAGTGATTGAGGCCGACGGCAGCGTCTCGCGCTTTTCCGTGCCCTTTTCCGCGGTTCCCGAATCCATGCGC 
CCGGGCATCTCGCGCTACAGCGCCACCCTCGGCCAAGCGCGCCAGTATGGCGACGGCAACGACCTGTTCGGC 
GACTTCACCTATCAGCGCGGCCTGACCAACTCGCTAACCGCCAACCTCGGCTCGCGCCTGGCCGAGGACTAT 
CTGGCGCTGCTCGGCGGAGGCGTGCTCGCCACGCCCTACGGAGCCTTCGGCTTCAACAGCATCTTTTCCCAT 
GCCACGGTGGAGAACGGCCAGCGCAAGCAGGGCTGGCGTGTCGGTCTGAACTACAGCCGGACCTTCCAGCCG 
ACCCAGACCACTCTCACCCTGGCTGGCTACCGCTATTCCACCGAGGGCTATCGCGACCTCGGCGACGCGCTT 
TCGGCGCGCCACGCCGATGAGCACAACGACTCCTGGAACTCCAGCAGCTACAAGCAACGCAACCAGTTCACC 
CTGCTGGTCAACCAGGGCCTGGGGGGCTACGGCAACCTGTATCTGTCCGGAGCCACCAGCGACTACTACGAC 
GGCAAGAGCCGCGACACCCAGTTGCAGTTCGGCTACAGCAACACTTGGCGCCAGCTCAGCTACAACCTCGCC 
TATTCGCGCCAGCAGACCACCTGGTACCGCGATCTGAACGACGACTACGACCCGTCACTGCCGCCGCAATAC 
AACCTGCGGCACGGCAGCGAACGTAGCAACACCTTAACCCTGACACTTTCCATGCCGCTGGGGTCCTCCAGC 
CAGGCCCCGAATCTCAGCGCGATGGCCTCCCGGCGTTCCGGCGACAGCCGCGGCAGCAGCTACCAGACGGGC 
CTCAACGGCACCCTCGACGAAGACCGCAGCCTGAGCTACGCGATTGCCGCCGGGCGCGACAGCGACAACCAC 
GGCAGCGATTTCAACGGCAGTCTGCAGAAACAGACCTCGGTGGCGACGCTGAACGCCGGCTATGCCGAGAAC 
AGCAGCTACCGGCAGCTCAACACCGGCCTGCGCGGCGCCGCCGTGCTGCATCGCGGCGGCCTGACCCTCGGC 
CCCTACGTCGGCGACACTTTCGCCCTGGTCGAGGCCAAGGGCGCCAGCGGAGCTGGCGTACGCGGTGGTCAG 
GGCGCGCGCGTCAACGGCAATGGCTACGCCGTGGTGCCATCACTCTCGCCCTACCGCTACAACCCGGTCAGC 
CTCGATCCGCAGGGCATGGGCGAAGAGGCCGAGCTGCTGGAGACCGAGCGCAAGATCGCGCCATACGCCGGC 
GCCGCCGTGCATGTGAAGTTCCGCACACTGACCGGTCACCCATTGCTAATCCAGGCCCAACTCGCCGACGGC 
AGCGCGCTACCGCTAGGGGCCAATGTGCTCGACAGCCAGGGTGTGAACATCGGCATGGTCGGTCAAGGCGGC 
CAGGTCTATGCCCGCGCCGAGGGCGACAAGGGCCGCCTGCGCGTGCAATGGAGCGAACGCCCAGGGGACGCC 
TGTCTGCTGGATTACGACCTCGACACTGGCCCTCGCCAGGCTATCGAACCCGGACAGGCGGTGATCCGCCTG 
CAGGGCACCTGCACGCCCGTCTCGGAGGCACCATGA