ViewGene
Locus Name:
GeneID:
Location:

GeneID:6695
TrivialName: PA14_59730
AnnotatorUID: urbach
Modification Date/Time:2006-07-03 16:04:21
LocusName:PA14_59730
PAO1 Ortholog Locus:
Sequence Length:330
Protein Length:109
Start: 5314894
Stop: 5315223
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84169.1| (AY273869) putative fimbrial biogenesis usher protein [Pseudomonas aeruginosa]
Identities = 108/108 (100%), Positives = 108/108 (100%)
Sequence:
ATGTTCTGCCACGTTGAGGCACGGCGCACCGGCAAACTGCCGCTGGCTCTGGGCGGCCTAGCGCTGGCCTTC
GCGGGCCTGGCCAATGGAGAGGCGCAGTATCGTTTCGACGACAGCCTGTTGATGGGCTCGGGCCTCGCCGGC
GGGACCCTAGAACGCTTCAACCGGGCCAACCAGGTGGACCCCGGAACCTACCATGTCGATGTCTATCTCAAC
GGCAGCTACGCCAGTCGCACCAGGATCGAGTTCCGCCCCCGGGCCGGCGGCGTCAAACCCTGCTTCGGCGAA
CGCTTCTTGCGCCGGACGCTGGGCGTCCGCCCCgcccTCTGA
Translation:
MFCHVEARRTGKLPLALGGLALAFAGLANGEAQYRFDDSLLMGSGLAGGTLERFNRANQVDPGTYHVDVYLN
GSYASRTRIEFRPRAGGVKPCFGERFLRRTLGVRPAL*
AnnotationID:6696GeneID:6695
AnnotatorUID: jianxin
Modification Date/Time: 2004-02-16 20:08:12
Gene Name:cupD3
Confidence Code:5
GeneProduct:putative fimbrial biogenesis usher protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
RL042, PA2130






 
Structural Features:






   
Genomic Context:






   
Comment:
This ORF is only similar to a part of PA2130 and RL042.


















    ReferenceID:13144




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30478




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6695
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
201489
                           gb|AAP84169.1|
                           (AY273869) putative fimbrial biogenesis usher protein [Pseudomonas aeruginosa]
                           870
                           12.41
                           12.41
                           761
                           564.0
     

     
     
8025
                           PA2130_tr
                           translation of PA2130
                           873
                           6.07
                           8.01
                           765
                           263.0
     

     
     
201490
                           gb|AAG05518.1|AE004640_7
                           (AE004640) usher CupA3 [Pseudomonas aeruginosa PAO1]
                           873
                           6.07
                           8.01
                           765
                           263.0
     

     






      

          
GC ORFID: 49697How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4578573Stop: 4578902

          
Length: 330


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL042 CupA3 870 Homolog: PA2130 / Probable fimbrial biogenesis usher protein / Biofilm-related / P.aeruginosa / PA01 (AAG05518) translation of RL042Homolog Bit Score 222.0

          
Other Homologs:  t_RL042 CupA3 870 Homolog: PA2130 / Probable fimbrial biogenesis usher protein / Biofilm-related / P.aeruginosa / PA01 (AAG05518) translation of RL042 (BLASTP 222), t_PA2130 translation of PA2130 (BLASTP 106)

          
GC ORF Sequence

           
ATGTTCTGCCACGTTGAGGCACGGCGCACCGGCAAACTGCCGCTGGCTCTGGGCGGCCTAGCGCTGGCCTTC 
GCGGGCCTGGCCAATGGAGAGGCGCAGTATCGTTTCGACGACAGCCTGTTGATGGGCTCGGGCCTCGCCGGC 
GGGACCCTAGAACGCTTCAACCGGGCCAACCAGGTGGACCCCGGAACCTACCATGTCGATGTCTATCTCAAC 
GGCAGCTACGCCAGTCGCACCAGGATCGAGTTCCGCCCCCGGGCCGGCGGCGTCAAACCCTGCTTCGGCGAA 
CGCTTCTTGCGCCGGACGCTGGGCGTCCGCCCCgcccTCTGA