ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6683

TrivialName: PA14_58680

AnnotatorUID: danlee

Modification Date/Time: 2006-05-03 14:02:48

LocusName: PA14_58680

PAO1 Ortholog Locus:

Sequence Length: 2472

Protein Length: 823

Start: 5229128

Stop: 5231599

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAM15534.1|AF482691_3 (AF482691) putative sensor kinase [Pseudomonas aeruginosa] Identities = 140/140 (100%), Positives = 140/140 (100%)

Sequence:

ATGCGTCGAGGAAAGGTATTACCCGCAAGAACGAAAAGACCCGGCATCCGCCGGGTCCTCGAGAAGCGGCTA
GGCGCCCTTGAGGCGCCGCAGGTTGCCGATCACCGACTCCAGGGCCCGGTCGAACAGCAAGGCATCGTCCAG
CAGGCGTACCGCCTGCCGGCGAAACTCCACCGCCAGGCCCATGCGGGTCTTTTCCAGGACCTTCATCCCGGT
GCGATTGACGAAGATGTAGCGACCGGTGGGCCGGATCACTGCCGCCAGCTTGCAGCGCAGCTTGTGCTCGGC
GTCCTCCTGGATTTCCACCCAACTGCCGACACGCAGCGCATCGACCCGCAGCAGTGCCTCGTCGTTGTCCGG
CAGGCGCACTTCGCTCTCGACAGGCGCCGGGGCGGCGTCCGGCGAGGTCAGGACAATTTCCTCGACCACCCG
CAGCATGACCGGCGCCCGGGGCTTTTCCGCGGCCGTGCCCGGGGTCGCTTCGTCGAGCAGCGGGCTGTCCGC
GACCGCCGCCTCGCCGCGCTTGTCGCGCTGCAGGCCCTGGACATGCAGGGTTTCCAGCTGGCTGAAGAATTC
TCCGGTGGAAAACGGATCGAAGGCTGCGCTGGCCAATCCCTCGCGCAGCGCCTTGAGCAGGCCTGGCACGCG
CTCCAGCAACTGTTGGCGGGACAGCGGATCATCATGCGGGCCGACGCTCCAGATCAGCTCGTCCATGGTATC
CAGGGCCTCCCGCCACTCGGCCGAAGCCTTGCCATGCTTGAGGCAGATCAGCAGCATCACCTTGCTCCAGGC
ATCCCGCAGCAGGCGCACCACCACCTCCGGCAGGACCTTGCCGAGCAGTCGCTGGTTCAGCACCTGCTCCAC
GTCCTGACGAGCCAGTTCGGCCTTGGCGCGGCCTTCCTCGGCGTCGCGGGTGCGTTGCTCGAGGAGCTCGCT
GCGGCGGCGCTCGTCGCCGGTGAAGGCAATGAAGTCCTCCAGCAACTCGGCGAAGATCGCCGGGTCGTCGAC
GAAGTCGTTCAACAGCCGCATCACGACCTGTTCGATCTTCTGGTACAGGCTGTCGCGCCGGGCATCATTGTG
TTCGGCCCAGCCCAGCGACGCGGATGCGATCTCGTTGAGCAGGCGACGCGCCGGATGGCTACCGCGGCTGAA
GAAGGTCTTGTCGAGCAGGGCCACCTTGAGCATCGGGATCTGCATCCGACCGATCAGGGCCTTCAGCGAATC
AGGCAGGGTGCGGTCGTCGAGAATGAACTCGAACAGCATCGACACCAGGTTGATGACGTCATCGTCCACCTG
GCCGACCACCCGAGAACGGCCGCTCTTGTGGCTGACCCGCTGGAGCAGTTGGTCGACCCCGTCGCGGACGTC
GAACTCCGCGGCGCCAGGGCCCGGCAAGTGCTGTTGCAGGTGGGAAAGCAGGCGCATCAGGTCGTTGCTGGA
AATCGGCGCGGCATTCTCAGGCGTTTCGCGACGGTAGAAGGAAGGATTGTCGCGGACCTGCGCCAGCAGTTC
CTGCAGCGCGCCGAAGACTTCCTGCTGACCGCCGTCGAGCAGCGCAGCCTGTGCCTGCAGGGTCCCGGCATC
GCGCACCGCTTCGGGACGGACAGCGGGCTGACGCCGCGGCAGCGCGGATTTGAGTTCCGGCAGCACGCCCGC
AGCGACCAGGATCTGGTTGGCCTCGGCGTACAACTGGTCGCAATGGGCCAGGACGTACTTCTCGAACAGCTT
GAGAATGATCAGCTTGACCTTGATCTCGACGCCGAGCCCCTGGCAGGCATCGAGGAAAGCCGAGGTCAGCGG
ACGCGGAGCGAGGGGATTGCTCTTCTCGTCGACCTTCCGGCCGACCAGGGTGTTCAGGCGGGTGCTCAGGTG
GGCCAGCGCGGAGGCATCGCGGCTCATCACCCGCGCCACCATCGCGTCCACCGCGACGGACTCCTCCAGTTC
CTCGTTCTGTACCAGGCTGAGGCTATCGAAGGACACGGTATCCAGGGTCGGCACGGATTTGCCGGACTGTAC
CTGGTTGAGCGCCGAGAACTCCTCGAAGACCTTCTGCAGGTAGACCCGCTCGATACTCTTGCGCTTGAGGCG
CAGGTCGCGCATGGCTTCGAAGAAAGCGTTCTGTTCGAGGTTGCTGGTGGCTCGGTCGGCCATTTCGAAGAG
GGTGTCGTCGGCGTTGTCGAACAACGCCTGCAACGCCTGTTTCAGCTGCAGCGCCGCCTTGTCGCGCACCTG
CACGAGGATGACCGGCAGGCGCCCCGCTCCGGCGTTCGGCGACGGCTCGGAAGCGACCCTGGTCAGGTGCAC
CACATTGGCATCGTTCTGCATCGGGACTCTCCTGCCACCCTCGCGGCCGCGCATGGAATGGCAAAAATCGGG
CACAGAGGATCGATTGGCGTCGTCCGTAACGTCAATTTCCAGGCGTCAAAAACAAGTATCTACATTCATTAT
AGAGATACTTTCAAATCTAGATAG

Translation:

MRRGKVLPARTKRPGIRRVLEKRLGALEAPQVADHRLQGPVEQQGIVQQAYRLPAKLHRQAHAGLFQDLHPG
AIDEDVATGGPDHCRQLAAQLVLGVLLDFHPTADTQRIDPQQCLVVVRQAHFALDRRRGGVRRGQDNFLDHP
QHDRRPGLFRGRARGRFVEQRAVRDRRLAALVALQALDMQGFQLAEEFSGGKRIEGCAGQSLAQRLEQAWHA
LQQLLAGQRIIMRADAPDQLVHGIQGLPPLGRSLAMLEADQQHHLAPGIPQQAHHHLRQDLAEQSLVQHLLH
VLTSQFGLGAAFLGVAGALLEELAAAALVAGEGNEVLQQLGEDRRVVDEVVQQPHHDLFDLLVQAVAPGIIV
FGPAQRRGCDLVEQATRRMATAAEEGLVEQGHLEHRDLHPTDQGLQRIRQGAVVENELEQHRHQVDDVIVHL
ADHPRTAALVADPLEQLVDPVADVELRGARARQVLLQVGKQAHQVVAGNRRGILRRFATVEGRIVADLRQQF
LQRAEDFLLTAVEQRSLCLQGPGIAHRFGTDSGLTPRQRGFEFRQHARSDQDLVGLGVQLVAMGQDVLLEQL
ENDQLDLDLDAEPLAGIEESRGQRTRSEGIALLVDLPADQGVQAGAQVGQRGGIAAHHPRHHRVHRDGLLQF
LVLYQAEAIEGHGIQGRHGFAGLYLVERRELLEDLLQVDPLDTLALEAQVAHGFEESVLFEVAGGSVGHFEE
GVVGVVEQRLQRLFQLQRRLVAHLHEDDRQAPRSGVRRRLGSDPGQVHHIGIVLHRDSPATLAAAHGMAKIG
HRGSIGVVRNVNFQASKTSIYIHYRDTFKSR*

AnnotationID:6684 GeneID:6683

AnnotatorUID: danlee

Modification Date/Time: 2006-05-03 14:02:15

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: INACTIVE

Pathway:

Homology:

>gb|AAM15534.1|AF482691_3 (AF482691) putative sensor kinase [Pseudomonas aeruginosa]
          Length = 664

 Score =  280 bits (715), Expect = 3e-74
 Identities = 140/140 (100%), Positives = 140/140 (100%)

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:13129

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30457

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:6683

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

201488 gb|AAM15534.1|AF482691_3 (AF482691) putative sensor kinase [Pseudomonas aeruginosa] 942 28.66 35.98 397 735.0

GC ORFID: `49685`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `4492807`	Stop: `4495278`
Length: `2472`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCGTCGAGGAAAGGTATTACCCGCAAGAACGAAAAGACCCGGCATCCGCCGGGTCCTCGAGAAGCGGCTA GGCGCCCTTGAGGCGCCGCAGGTTGCCGATCACCGACTCCAGGGCCCGGTCGAACAGCAAGGCATCGTCCAG CAGGCGTACCGCCTGCCGGCGAAACTCCACCGCCAGGCCCATGCGGGTCTTTTCCAGGACCTTCATCCCGGT GCGATTGACGAAGATGTAGCGACCGGTGGGCCGGATCACTGCCGCCAGCTTGCAGCGCAGCTTGTGCTCGGC GTCCTCCTGGATTTCCACCCAACTGCCGACACGCAGCGCATCGACCCGCAGCAGTGCCTCGTCGTTGTCCGG CAGGCGCACTTCGCTCTCGACAGGCGCCGGGGCGGCGTCCGGCGAGGTCAGGACAATTTCCTCGACCACCCG CAGCATGACCGGCGCCCGGGGCTTTTCCGCGGCCGTGCCCGGGGTCGCTTCGTCGAGCAGCGGGCTGTCCGC GACCGCCGCCTCGCCGCGCTTGTCGCGCTGCAGGCCCTGGACATGCAGGGTTTCCAGCTGGCTGAAGAATTC TCCGGTGGAAAACGGATCGAAGGCTGCGCTGGCCAATCCCTCGCGCAGCGCCTTGAGCAGGCCTGGCACGCG CTCCAGCAACTGTTGGCGGGACAGCGGATCATCATGCGGGCCGACGCTCCAGATCAGCTCGTCCATGGTATC CAGGGCCTCCCGCCACTCGGCCGAAGCCTTGCCATGCTTGAGGCAGATCAGCAGCATCACCTTGCTCCAGGC ATCCCGCAGCAGGCGCACCACCACCTCCGGCAGGACCTTGCCGAGCAGTCGCTGGTTCAGCACCTGCTCCAC GTCCTGACGAGCCAGTTCGGCCTTGGCGCGGCCTTCCTCGGCGTCGCGGGTGCGTTGCTCGAGGAGCTCGCT GCGGCGGCGCTCGTCGCCGGTGAAGGCAATGAAGTCCTCCAGCAACTCGGCGAAGATCGCCGGGTCGTCGAC GAAGTCGTTCAACAGCCGCATCACGACCTGTTCGATCTTCTGGTACAGGCTGTCGCGCCGGGCATCATTGTG TTCGGCCCAGCCCAGCGACGCGGATGCGATCTCGTTGAGCAGGCGACGCGCCGGATGGCTACCGCGGCTGAA GAAGGTCTTGTCGAGCAGGGCCACCTTGAGCATCGGGATCTGCATCCGACCGATCAGGGCCTTCAGCGAATC AGGCAGGGTGCGGTCGTCGAGAATGAACTCGAACAGCATCGACACCAGGTTGATGACGTCATCGTCCACCTG GCCGACCACCCGAGAACGGCCGCTCTTGTGGCTGACCCGCTGGAGCAGTTGGTCGACCCCGTCGCGGACGTC GAACTCCGCGGCGCCAGGGCCCGGCAAGTGCTGTTGCAGGTGGGAAAGCAGGCGCATCAGGTCGTTGCTGGA AATCGGCGCGGCATTCTCAGGCGTTTCGCGACGGTAGAAGGAAGGATTGTCGCGGACCTGCGCCAGCAGTTC CTGCAGCGCGCCGAAGACTTCCTGCTGACCGCCGTCGAGCAGCGCAGCCTGTGCCTGCAGGGTCCCGGCATC GCGCACCGCTTCGGGACGGACAGCGGGCTGACGCCGCGGCAGCGCGGATTTGAGTTCCGGCAGCACGCCCGC AGCGACCAGGATCTGGTTGGCCTCGGCGTACAACTGGTCGCAATGGGCCAGGACGTACTTCTCGAACAGCTT GAGAATGATCAGCTTGACCTTGATCTCGACGCCGAGCCCCTGGCAGGCATCGAGGAAAGCCGAGGTCAGCGG ACGCGGAGCGAGGGGATTGCTCTTCTCGTCGACCTTCCGGCCGACCAGGGTGTTCAGGCGGGTGCTCAGGTG GGCCAGCGCGGAGGCATCGCGGCTCATCACCCGCGCCACCATCGCGTCCACCGCGACGGACTCCTCCAGTTC CTCGTTCTGTACCAGGCTGAGGCTATCGAAGGACACGGTATCCAGGGTCGGCACGGATTTGCCGGACTGTAC CTGGTTGAGCGCCGAGAACTCCTCGAAGACCTTCTGCAGGTAGACCCGCTCGATACTCTTGCGCTTGAGGCG CAGGTCGCGCATGGCTTCGAAGAAAGCGTTCTGTTCGAGGTTGCTGGTGGCTCGGTCGGCCATTTCGAAGAG GGTGTCGTCGGCGTTGTCGAACAACGCCTGCAACGCCTGTTTCAGCTGCAGCGCCGCCTTGTCGCGCACCTG CACGAGGATGACCGGCAGGCGCCCCGCTCCGGCGTTCGGCGACGGCTCGGAAGCGACCCTGGTCAGGTGCAC CACATTGGCATCGTTCTGCATCGGGACTCTCCTGCCACCCTCGCGGCCGCGCATGGAATGGCAAAAATCGGG CACAGAGGATCGATTGGCGTCGTCCGTAACGTCAATTTCCAGGCGTCAAAAACAAGTATCTACATTCATTAT AGAGATACTTTCAAATCTAGATAG