ViewGene
Locus Name:
GeneID:
Location:

GeneID:6680
TrivialName: PA14_58480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58480
PAO1 Ortholog Locus:
Sequence Length:897
Protein Length:298
Start: 5209479
Stop: 5208583
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAA80577.1| (AP000062) 345aa long hypothetical protein [Aeropyrum pernix]
Identities = 70/237 (29%), Positives = 99/237 (41%), Gaps = 30/237 (12%)
Sequence:
GTGGAAGGCGCAACCCTCCGGCGGGTGCAGCGGGTTCGGCAGTTCGCCCTGGATGCGGATCTTCGGCTTCGT
CGGGTCCGGGTGGATCGCCGGGGTCGCCGAGAGCAGCGCGCGGGTATAGGGATGCAGCGGGTTCTCGTAGAG
CTTGTCCGCCGGCCCCATCTCCGCCGGTCGGCCGAGGTACATCACCAGGACGTCGTCGGCGACGTGGCGGAC
CACCGCCAGGTTGTGCGAGATGAACACGTAGGCGGTGCGGAACTGCTGCTGCAGGTCCATGAACAGGTTCAG
TACCTGGGCCTGGATCGACACGTCGAGGGCCGAGGTCGGCTCGTCCGCCACCAGCACCTTGGGTTGCAGCAT
CATCGCCCGGGCCAGGGCGATGCGCTGGCGCTGGCCGCCGGAGAACATGTGCGGGTAGCGCTGGTAGTGCTC
CGGCCGCAGGCCGACCTGGCGCATCATCTGCTGGACCTTTTCGCGGCGTTCCTCGCGCGAGAGCGCGGTGTT
GATCAGCAGCGGCTCGGCCAACTGGTCGCCGATCTTCTGTCGCGGATTGAGCGAGGCGTAGGGGTTCTGGAA
GACCATCTGCACGTCGCGGCGCAACTGCCGGCGCTGGTCCTTGCTGGCGCCCTTGACCTCCTGCCCGGCGAT
TTTCAGCGAGCCGGAGGTGGGTTCCTCGATCAGGGTCAGGGCGCGCGCCAGGGTCGACTTGCCGCAGCCGGA
CTCGCCGACCACGGCGAGGGTCTTGCCGGCTTCCAGTTCGAACGATACGCCGTTCAGCGCGCGCACCTGGGC
ATGGCCCTTGAACAGGCCGCGGGAGACTTCGTAGTGACGGGTCAGATCACGGGCGGTCAGAACGGTTTCCAT
CAGGCCACCTCGTTCAGCAGGTTCAACGGATAG
Translation:
MEGATLRRVQRVRQFALDADLRLRRVRVDRRGRREQRAGIGMQRVLVELVRRPHLRRSAEVHHQDVVGDVAD
HRQVVRDEHVGGAELLLQVHEQVQYLGLDRHVEGRGRLVRHQHLGLQHHRPGQGDALALAAGEHVRVALVVL
RPQADLAHHLLDLFAAFLARERGVDQQRLGQLVADLLSRIERGVGVLEDHLHVAAQLPALVLAGALDLLPGD
FQRAGGGFLDQGQGARQGRLAAAGLADHGEGLAGFQFERYAVQRAHLGMALEQAAGDFVVTGQITGGQNGFH
QATSFSRFNG*
AnnotationID:6681GeneID:6680
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 07:07:32
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits at any threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:16448




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30451




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49682How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4473157Stop: 4472261

          
Length: 897


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGGAAGGCGCAACCCTCCGGCGGGTGCAGCGGGTTCGGCAGTTCGCCCTGGATGCGGATCTTCGGCTTCGT 
CGGGTCCGGGTGGATCGCCGGGGTCGCCGAGAGCAGCGCGCGGGTATAGGGATGCAGCGGGTTCTCGTAGAG 
CTTGTCCGCCGGCCCCATCTCCGCCGGTCGGCCGAGGTACATCACCAGGACGTCGTCGGCGACGTGGCGGAC 
CACCGCCAGGTTGTGCGAGATGAACACGTAGGCGGTGCGGAACTGCTGCTGCAGGTCCATGAACAGGTTCAG 
TACCTGGGCCTGGATCGACACGTCGAGGGCCGAGGTCGGCTCGTCCGCCACCAGCACCTTGGGTTGCAGCAT 
CATCGCCCGGGCCAGGGCGATGCGCTGGCGCTGGCCGCCGGAGAACATGTGCGGGTAGCGCTGGTAGTGCTC 
CGGCCGCAGGCCGACCTGGCGCATCATCTGCTGGACCTTTTCGCGGCGTTCCTCGCGCGAGAGCGCGGTGTT 
GATCAGCAGCGGCTCGGCCAACTGGTCGCCGATCTTCTGTCGCGGATTGAGCGAGGCGTAGGGGTTCTGGAA 
GACCATCTGCACGTCGCGGCGCAACTGCCGGCGCTGGTCCTTGCTGGCGCCCTTGACCTCCTGCCCGGCGAT 
TTTCAGCGAGCCGGAGGTGGGTTCCTCGATCAGGGTCAGGGCGCGCGCCAGGGTCGACTTGCCGCAGCCGGA 
CTCGCCGACCACGGCGAGGGTCTTGCCGGCTTCCAGTTCGAACGATACGCCGTTCAGCGCGCGCACCTGGGC 
ATGGCCCTTGAACAGGCCGCGGGAGACTTCGTAGTGACGGGTCAGATCACGGGCGGTCAGAACGGTTTCCAT 
CAGGCCACCTCGTTCAGCAGGTTCAACGGATAG