ViewGene
Locus Name:
GeneID:
Location:

GeneID:6679
TrivialName: PA14_58460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58460
PAO1 Ortholog Locus:
Sequence Length:1032
Protein Length:343
Start: 5208559
Stop: 5207528
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAD00241.1| (U74323) glucose-binding protein [Pseudomonas putida]
Identities = 64/262 (24%), Positives = 93/262 (35%), Gaps = 42/262 (16%)
Sequence:
GTGCGCTTCCAGGGCCGGCCGCTCCTGGCGGCAATGCTCCTGGGCATAGGGACAGCGTGGCGACAGCAGGCA
ACCGCGCGGGCGGTCGTAGCGCCCCGGAACGATGCCGGGCAGGGTGGCCAGGCGGGCTTCGCCGGCACAGTG
CTCGGGGATCGCCTTGATCAGCGCCTCGGTGTAGGGATGGGTCGGGCGGTCGAACAGCGCCGGCACGCCGCC
GATCTCCACCGCTTCGCCGGCGTACATCACGCAGACGCGCTGGGCGGTCTCGGCGACCACGGCGAGATCGTG
GGTGATCAGGATCAGCGCCATGTCCTGGTCGCGCTGCAGGTTCAGCAGCAGCTCCATGATCTGCGCCTGGAT
GGTCACGTCGAGGGCGGTGGTCGGCTCGTCGGCGATCAGCAGCTTGGGCTCGGCAGCGATGGCCATGGCGAT
CGCCACGCGCTGGCTCATGCCGCCGGAGAGCTGGTGCGGGTAGGCGTCGAGACGGCTGGCGGCGGCCGGGAT
CTCGACCCGTTCGAGCAGTTCCAGGGCGCGCTGGCGCAGGGCCTTGCCGCGCAGGCCGAGATGCAGGCGGAG
GACTTCCTCGATCTGGTAGCCGACGGTGTAGCTGGGGTTGAGGGCGGTCATCGGGTCCTGGAAGACCATCGC
CATGTCCTTGCCGACGATGCGCCGGCGCTGGCGGCCCTTGAGGGTGAGCATGTCGTGGCCGTCGAAGCGCAG
GTGATCGGCGGACACCCAGCCGGGGGCGTCGATCAGGCCCATCAGGGCCATCATGGTCACCGACTTGCCGGA
GCCGGACTCGCCGACGATGGCCAGCACCTCGCCCTTGTCGACGCTCAGGTCGAGGCCGTCGACCACGGGCAC
GGCGGTGGTGTCGCCGAAGCGCACGCTGAGGTTCTTGATATCGAGGAGGCTCATGCGGCGGTCTCCTGTGGC
GCGGATACGGATGCGCTGTTCATGGTTGTGCTCCTCATGCCGCGTTCTTCAGTTTCGGATCGAGGGCGTCGC
GCAGGCCGTCGCCCATCAGGTTGA
Translation:
MRFQGRPLLAAMLLGIGTAWRQQATARAVVAPRNDAGQGGQAGFAGTVLGDRLDQRLGVGMGRAVEQRRHAA
DLHRFAGVHHADALGGLGDHGEIVGDQDQRHVLVALQVQQQLHDLRLDGHVEGGGRLVGDQQLGLGSDGHGD
RHALAHAAGELVRVGVETAGGGRDLDPFEQFQGALAQGLAAQAEMQAEDFLDLVADGVAGVEGGHRVLEDHR
HVLADDAPALAALEGEHVVAVEAQVIGGHPAGGVDQAHQGHHGHRLAGAGLADDGQHLALVDAQVEAVDHGH
GGGVAEAHAEVLDIEEAHAAVSCGADTDALFMVVLLMPRSSVSDRGRRAGRRPSG*
AnnotationID:6680GeneID:6679
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 07:07:55
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits at any threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:16446




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30450




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49681How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4472237Stop: 4471206

          
Length: 1032


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGCGCTTCCAGGGCCGGCCGCTCCTGGCGGCAATGCTCCTGGGCATAGGGACAGCGTGGCGACAGCAGGCA 
ACCGCGCGGGCGGTCGTAGCGCCCCGGAACGATGCCGGGCAGGGTGGCCAGGCGGGCTTCGCCGGCACAGTG 
CTCGGGGATCGCCTTGATCAGCGCCTCGGTGTAGGGATGGGTCGGGCGGTCGAACAGCGCCGGCACGCCGCC 
GATCTCCACCGCTTCGCCGGCGTACATCACGCAGACGCGCTGGGCGGTCTCGGCGACCACGGCGAGATCGTG 
GGTGATCAGGATCAGCGCCATGTCCTGGTCGCGCTGCAGGTTCAGCAGCAGCTCCATGATCTGCGCCTGGAT 
GGTCACGTCGAGGGCGGTGGTCGGCTCGTCGGCGATCAGCAGCTTGGGCTCGGCAGCGATGGCCATGGCGAT 
CGCCACGCGCTGGCTCATGCCGCCGGAGAGCTGGTGCGGGTAGGCGTCGAGACGGCTGGCGGCGGCCGGGAT 
CTCGACCCGTTCGAGCAGTTCCAGGGCGCGCTGGCGCAGGGCCTTGCCGCGCAGGCCGAGATGCAGGCGGAG 
GACTTCCTCGATCTGGTAGCCGACGGTGTAGCTGGGGTTGAGGGCGGTCATCGGGTCCTGGAAGACCATCGC 
CATGTCCTTGCCGACGATGCGCCGGCGCTGGCGGCCCTTGAGGGTGAGCATGTCGTGGCCGTCGAAGCGCAG 
GTGATCGGCGGACACCCAGCCGGGGGCGTCGATCAGGCCCATCAGGGCCATCATGGTCACCGACTTGCCGGA 
GCCGGACTCGCCGACGATGGCCAGCACCTCGCCCTTGTCGACGCTCAGGTCGAGGCCGTCGACCACGGGCAC 
GGCGGTGGTGTCGCCGAAGCGCACGCTGAGGTTCTTGATATCGAGGAGGCTCATGCGGCGGTCTCCTGTGGC 
GCGGATACGGATGCGCTGTTCATGGTTGTGCTCCTCATGCCGCGTTCTTCAGTTTCGGATCGAGGGCGTCGC 
GCAGGCCGTCGCCCATCAGGTTGA