ViewGene
Locus Name:
GeneID:
Location:

GeneID:6676
TrivialName: PA14_58370
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58370
PAO1 Ortholog Locus:
Sequence Length:1095
Protein Length:364
Start: 5199659
Stop: 5198564
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
GeneID6676 (PA14_58370) replaced by GeneID7421 (PA14_58375). Homology: gb|AAG07886.1|AE004863_6 (AE004863) probable metallopeptidase [Pseudomonas aeruginosa PAO1]
Identities = 319/320 (99%), Positives = 319/320 (99%)
Sequence:
ATGACCGTGGGTGTTGGCGGGAGTACCCCTGCGCAggCGCTGGAGCGTCTGCGGAACATGATGGACGGCGCG
CAGCCGATCGGCCTGGCGTCTTACCGTGCGCGAatCGCCGCGGCCCAGGCGTGGATGGGCGAGCATGGCATC
GCCGCGGCGTACCTGCATGCAGGCAGCAACCTGCGTTACTTCAGCGGCGTGCAATGGCACCCCAGTGAACGT
CTGGTGGGTGCGCTGCTGCCCGCCGAGGGCGCCCTCGAATACCTTGCGCCGGCCTTCGAGGAAGGGACGGTG
CGCGACTTCCAGGTGGTCGACGGCGCCATCCACACCTGGGAGGAACACCAGGATCCCTACCGCCTGCTGCTC
GATCGCCTGGAGGCGCTCGGCGTGGGTGAGCGCAGCACGGTCGCACTGTGTCCGAGCCTGCCGTTCGGCATG
TTCGAGCGCTTGCGCCAACTGGCGCCGGGCAGGAACTTCGTCAGCGCCGCGCCGCTGATCGACCAGGGGCGG
ATGCGCAAGTCGGCCGAGGAGCTGGCGCTGATGCAGCGGGCCAAGGACATGACCCTGGAAGTGCAGAAGGCC
GCGGCGAGCATTCTCCGCGAAGGCATCAGCACCACCGAAGTCGCCGAGTTCATCCACCAGGCGCACCGCAAG
GTGGGCGCGCCCGGTTCGACCTTCTGCATCGTCCTGTTCGGTGCCGCCAGTGCCTTCCCCCATGGGGTGAAG
CATGCGCAGGTGCTGAAGGATGGCGACATGGTGCTGATCGATACCGGCTGCCAGGTCCACGGCTACCAGTCG
GATATCACCCGCAGCTATGTGTTCGGCACGCCCAGCGCACGCCAGCGCGAATTCTGGGGGATGGAGCGCGAC
GCCCAACTGGCGGCCTTCGAGGCCGCGCGTCTGGGCCAGCCCTGCGAGGCGGTGGACGCCGCTGCGCGGCGT
TCGCTGGAGGCCAACGGCCTGGGCCGGACTACCGCCTGCCTGGCCTGCCGCACCGCACCGGGCATGGCATCG
GCATGGACGTCCACGAAGGCCCGTACCTGGTGCGTGGCGATCGCACGCCGCTGGATGTCGGCATGTGCTTCA
GCAACGAACCGATGA
Translation:
MTVGVGGSTPAQALERLRNMMDGAQPIGLASYRARIAAAQAWMGEHGIAAAYLHAGSNLRYFSGVQWHPSER
LVGALLPAEGALEYLAPAFEEGTVRDFQVVDGAIHTWEEHQDPYRLLLDRLEALGVGERSTVALCPSLPFGM
FERLRQLAPGRNFVSAAPLIDQGRMRKSAEELALMQRAKDMTLEVQKAAASILREGISTTEVAEFIHQAHRK
VGAPGSTFCIVLFGAASAFPHGVKHAQVLKDGDMVLIDTGCQVHGYQSDITRSYVFGTPSARQREFWGMERD
AQLAAFEAARLGQPCEAVDAAARRSLEANGLGRTTACLACRTAPGMASAWTSTKARTWCVAIARRWMSACAS
ATNR*
AnnotationID:6677GeneID:6676
AnnotatorUID: danlee
Modification Date/Time: 2006-03-13 11:11:29
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAM41687.1| (AE012352) proline dipeptidase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 399

 Score =  263 bits (672), Expect = 1e-69
 Identities = 153/321 (47%), Positives = 194/321 (60%), Gaps = 5/321 (1%)








 
Structural Features:
COG0006, PepP, Xaa-Pro aminopeptidase 
[Amino acid transport and metabolism]
CD-Length = 384 residues, only  79.4% aligned
Score =  228 bits (581), Expect = 3e-60
Identities = 107/305 (35%), Positives = 150/305 (49%), Gaps = 7/305 (2%)






   
Genomic Context:






   
Comment:
GeneID6676 (PA14_58370) replaced by GeneID7421 (PA14_58375).


















    ReferenceID:13117




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30445




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31541




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6676_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6676
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
8024
                           PA4498_tr
                           translation of PA4498
                           408
                           79.90
                           80.88
                           47
                           1620.0
     

     
     
201480
                           gb|AAG07886.1|AE004863_6
                           (AE004863) probable metallopeptidase [Pseudomonas aeruginosa PAO1]
                           408
                           79.90
                           80.88
                           47
                           1620.0
     

     
     
201481
                           gb|AAM41687.1|
                           (AE012352) proline dipeptidase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           416
                           39.42
                           50.24
                           69
                           669.0
     

     
     
201482
                           gb|AAM37396.1|
                           (AE011894) proline dipeptidase [Xanthomonas axonopodis pv. citri str. 306]
                           416
                           38.46
                           50.48
                           69
                           655.0
     

     
     
201483
                           gb|AAF83033.1|AE003875_8
                           (AE003875) proline dipeptidase [Xylella fastidiosa 9a5c]
                           403
                           38.46
                           51.11
                           42
                           636.0
     

     






      

          
GC ORFID: 49678How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4463337Stop: 4462243

          
Length: 1095


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4498 translation of PA4498Homolog Bit Score 636.0

          
Other Homologs:  t_PA4498 translation of PA4498 (BLASTP 636)

          
GC ORF Sequence

           
ATGACCGTGGGTGTTGGCGGGAGTACCCCTGCGCAggCGCTGGAGCGTCTGCGGAACATGATGGACGGCGCG 
CAGCCGATCGGCCTGGCGTCTTACCGTGCGCGAatCGCCGCGGCCCAGGCGTGGATGGGCGAGCATGGCATC 
GCCGCGGCGTACCTGCATGCAGGCAGCAACCTGCGTTACTTCAGCGGCGTGCAATGGCACCCCAGTGAACGT 
CTGGTGGGTGCGCTGCTGCCCGCCGAGGGCGCCCTCGAATACCTTGCGCCGGCCTTCGAGGAAGGGACGGTG 
CGCGACTTCCAGGTGGTCGACGGCGCCATCCACACCTGGGAGGAACACCAGGATCCCTACCGCCTGCTGCTC 
GATCGCCTGGAGGCGCTCGGCGTGGGTGAGCGCAGCACGGTCGCACTGTGTCCGAGCCTGCCGTTCGGCATG 
TTCGAGCGCTTGCGCCAACTGGCGCCGGGCAGGAACTTCGTCAGCGCCGCGCCGCTGATCGACCAGGGGCGG 
ATGCGCAAGTCGGCCGAGGAGCTGGCGCTGATGCAGCGGGCCAAGGACATGACCCTGGAAGTGCAGAAGGCC 
GCGGCGAGCATTCTCCGCGAAGGCATCAGCACCACCGAAGTCGCCGAGTTCATCCACCAGGCGCACCGCAAG 
GTGGGCGCGCCCGGTTCGACCTTCTGCATCGTCCTGTTCGGTGCCGCCAGTGCCTTCCCCCATGGGGTGAAG 
CATGCGCAGGTGCTGAAGGATGGCGACATGGTGCTGATCGATACCGGCTGCCAGGTCCACGGCTACCAGTCG 
GATATCACCCGCAGCTATGTGTTCGGCACGCCCAGCGCACGCCAGCGCGAATTCTGGGGGATGGAGCGCGAC 
GCCCAACTGGCGGCCTTCGAGGCCGCGCGTCTGGGCCAGCCCTGCGAGGCGGTGGACGCCGCTGCGCGGCGT 
TCGCTGGAGGCCAACGGCCTGGGCCGGACTACCGCCTGCCTGGCCTGCCGCACCGCACCGGGCATGGCATCG 
GCATGGACGTCCACGAAGGCCCGTACCTGGTGCGTGGCGATCGCACGCCGCTGGATGTCGGCATGTGCTTCA 
GCAACGAACCGATGA