ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6672

TrivialName: PA14_58200

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_58200

PAO1 Ortholog Locus:

Sequence Length: 1530

Protein Length: 509

Start: 5180805

Stop: 5179276

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAE32433.1| (BX640442) adhesin [Bordetella bronchiseptica] Identities = 114/434 (26%), Positives = 163/434 (37%), Gaps = 79/434 (18%)

Sequence:

TTGCGTTGGGGTTGTAGCGCTCGCCGCTGGCAGTACGCAGGCCTGCGTGGCGGCTGCCATAGTAGGAGGCTT
CGCCGGTATCCGCGGAACCGCTGCCGGCGAGGCTGGAGCAGCCGGCGAGGAACAGGGGCAGGACGGCGAGGG
CGAGGCGCGCGGCGGCGGATGGGTTGGGCATGGACAACAGGCTCCTGGCGGACAAGAAGACGCCGGGCGAAC
CCGGCGTCTGGCTTTGACTCACGCTTCGAGCTTTTTCTTCAGCAACTCGTTCACTTGCTGCGGGTTGGCCTT
GCCTTTCGAGGCCTTCATCGCCTGGCCGACGAAGAAGCCGAACATCTTGCCGCGCTTGGCCTCGTCGGCGGC
GCGGTACTGCTCGACCTGCTCGGCGTTGGCCGCCAGCACCTCGTCGAGCATCTTCTCGATGGCGCCACTGTC
GGTGACCTGCTTCAGGCCCTTGGCCTCGATGATCTGGTCGGCGGAACCCTCGCCGTTGGCCATGGCTTCGAA
GACCATCTTGGCGATCTTGCCGGAGATGGTGTTGTCCTTGATGCGCAGGATCATGCCGCCCAGTTGCTCGGC
GGACACCGGAGACTGCTCGATCTCCAGGCCGTCCTTGTTGAGCAGGCTGCCCAGCTCGACCATCACCCAGTT
GGCCGCCAGCTTGGCGTCGCCGCAGATACCCTGGACCTTCTCGAAGTAGTCGGCCATCTCGCGGCTGGCGGA
CAGCACGCTGGCATCGTAGGCGGACAGGCCGTACTGGCTCTCGAAGCGTTCGCGCTTCTGCACCGGCAGTTC
CGGCAGTTGCTCGCGCAGCTTCGCCAGGTACTCGGGTTCGATGACCACCGGCAGCAGGTCGGGACAGGGGAA
GTAACGGTAGTCGTTGGCTTCTTCCTTGCCGCGCATGGAGCGGGTCTCGTCCTTGTTCGGGTCGTACAGGCG
GGTTTCCTGGACCACCTTGCCGCCGTCCTCGATCAGCTCGATCTGGCGCTGGATCTCGTGGTTGATCGCCTT
CTCGATGAAGCGGAAGGAGTTGACGTTCTTGATCTCGGCGCGGGTGCCGAATTCGGCCTGGCCCTTCGGTCG
CACCGAGACGTTGCAGTCGCAGCGCAGCGAGCCCTCGGCCATGTTGCCGTCGCAGATGCCCAGGTAGCGCAC
CAGGGCGTGGATCGCCTTGACGTAGGCCACGGCTTCCTTGGCGCTGCGGATATCCGGCTCGGAAACGATCTC
CAGCAACGGCGTGCCGGCGCGGTTCAGGTCGATGCCGCTCATGCCCTGGAAGTCTTCGTGCAGGCTCTTGCC
GGCGTCCTCCTCCAGGTGCGCGCGGGTGATGCCGATGCGCTTGGTGGTGCCGTCTTCCAGGGTGATGTCGAG
GTGGCCCTTGCCGACGATGGGATGGTCCATCTGGCTGGTCTGGTAGCCCTTCGGCAGGTCAGGGTAGAAGTA
GTTCTTGCGGGCGAACACGTTCTGCCGGTCGATCCGTGCGTCGATCGCCAGGCCGAACAGGCAGGCCATGCG
TACGGCCTCCTCGTTTAG

Translation:

MRWGCSARRWQYAGLRGGCHSRRLRRYPRNRCRRGWSSRRGTGAGRRGRGARRRMGWAWTTGSWRTRRRRAN
PASGFDSRFELFLQQLVHLLRVGLAFRGLHRLADEEAEHLAALGLVGGAVLLDLLGVGRQHLVEHLLDGATV
GDLLQALGLDDLVGGTLAVGHGFEDHLGDLAGDGVVLDAQDHAAQLLGGHRRLLDLQAVLVEQAAQLDHHPV
GRQLGVAADTLDLLEVVGHLAAGGQHAGIVGGQAVLALEAFALLHRQFRQLLAQLRQVLGFDDHRQQVGTGE
VTVVVGFFLAAHGAGLVLVRVVQAGFLDHLAAVLDQLDLALDLVVDRLLDEAEGVDVLDLGAGAEFGLALRS
HRDVAVAAQRALGHVAVADAQVAHQGVDRLDVGHGFLGAADIRLGNDLQQRRAGAVQVDAAHALEVFVQALA
GVLLQVRAGDADALGGAVFQGDVEVALADDGMVHLAGLVALRQVRVEVVLAGEHVLPVDPCVDRQAEQAGHA
YGLLV*

AnnotationID:6673 GeneID:6672

AnnotatorUID: diggins

Modification Date/Time: 2004-03-23 13:01:51

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16440

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30438

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31527

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6672_cdd.html

URL:

GC ORFID: `49674`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `4444484`	Stop: `4442955`
Length: `1530`
Start Codon: `TTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCGTTGGGGTTGTAGCGCTCGCCGCTGGCAGTACGCAGGCCTGCGTGGCGGCTGCCATAGTAGGAGGCTT CGCCGGTATCCGCGGAACCGCTGCCGGCGAGGCTGGAGCAGCCGGCGAGGAACAGGGGCAGGACGGCGAGGG CGAGGCGCGCGGCGGCGGATGGGTTGGGCATGGACAACAGGCTCCTGGCGGACAAGAAGACGCCGGGCGAAC CCGGCGTCTGGCTTTGACTCACGCTTCGAGCTTTTTCTTCAGCAACTCGTTCACTTGCTGCGGGTTGGCCTT GCCTTTCGAGGCCTTCATCGCCTGGCCGACGAAGAAGCCGAACATCTTGCCGCGCTTGGCCTCGTCGGCGGC GCGGTACTGCTCGACCTGCTCGGCGTTGGCCGCCAGCACCTCGTCGAGCATCTTCTCGATGGCGCCACTGTC GGTGACCTGCTTCAGGCCCTTGGCCTCGATGATCTGGTCGGCGGAACCCTCGCCGTTGGCCATGGCTTCGAA GACCATCTTGGCGATCTTGCCGGAGATGGTGTTGTCCTTGATGCGCAGGATCATGCCGCCCAGTTGCTCGGC GGACACCGGAGACTGCTCGATCTCCAGGCCGTCCTTGTTGAGCAGGCTGCCCAGCTCGACCATCACCCAGTT GGCCGCCAGCTTGGCGTCGCCGCAGATACCCTGGACCTTCTCGAAGTAGTCGGCCATCTCGCGGCTGGCGGA CAGCACGCTGGCATCGTAGGCGGACAGGCCGTACTGGCTCTCGAAGCGTTCGCGCTTCTGCACCGGCAGTTC CGGCAGTTGCTCGCGCAGCTTCGCCAGGTACTCGGGTTCGATGACCACCGGCAGCAGGTCGGGACAGGGGAA GTAACGGTAGTCGTTGGCTTCTTCCTTGCCGCGCATGGAGCGGGTCTCGTCCTTGTTCGGGTCGTACAGGCG GGTTTCCTGGACCACCTTGCCGCCGTCCTCGATCAGCTCGATCTGGCGCTGGATCTCGTGGTTGATCGCCTT CTCGATGAAGCGGAAGGAGTTGACGTTCTTGATCTCGGCGCGGGTGCCGAATTCGGCCTGGCCCTTCGGTCG CACCGAGACGTTGCAGTCGCAGCGCAGCGAGCCCTCGGCCATGTTGCCGTCGCAGATGCCCAGGTAGCGCAC CAGGGCGTGGATCGCCTTGACGTAGGCCACGGCTTCCTTGGCGCTGCGGATATCCGGCTCGGAAACGATCTC CAGCAACGGCGTGCCGGCGCGGTTCAGGTCGATGCCGCTCATGCCCTGGAAGTCTTCGTGCAGGCTCTTGCC GGCGTCCTCCTCCAGGTGCGCGCGGGTGATGCCGATGCGCTTGGTGGTGCCGTCTTCCAGGGTGATGTCGAG GTGGCCCTTGCCGACGATGGGATGGTCCATCTGGCTGGTCTGGTAGCCCTTCGGCAGGTCAGGGTAGAAGTA GTTCTTGCGGGCGAACACGTTCTGCCGGTCGATCCGTGCGTCGATCGCCAGGCCGAACAGGCAGGCCATGCG TACGGCCTCCTCGTTTAG