ViewGene
Locus Name:
GeneID:
Location:

GeneID:6660
TrivialName: PA14_57420
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57420
PAO1 Ortholog Locus:
Sequence Length:600
Protein Length:199
Start: 5116761
Stop: 5116162
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Inactivated 2/03/06. PA14_57430 (GeneID 3150) and PA14_57420 (GeneID 6660) replaced by PA14_57425 (GeneID 7387). Homology: gb|AAG07806.1|AE004856_17 (AE004856) penicillin-binding protein 3 [Pseudomonas aeruginosa PAO1]
Identities = 198/199 (99%), Positives = 199/199 (100%)
Sequence:
TTGGGCTTCCCCGGCGAGCGCGTCGGCAACCTGCCCAACCACCGCAAGTGGCCGAAGGCGGAAACCGCGACC
CTGGCCTACGGCTACGGTCTCTCGGTAACCGCGATCCAGTTGGCGCATGCCTATGCGGCCCTGGCCAACGAC
GGCAAGAGCGTGCCGCTGAGCATGACCCGAGTCGACCGCGTGCCGGATGGCGTGCAGGTGATCTCGCCGGAA
GTGGCTTCCACCGTGCAGGGCATGCTGCAACAAGTGGTCGAGGCCCAGGGcGGGGTGTTCCGCGCCCAGGTG
CCGGGTTACCACGCCGCCGGCAAGAGCGGGACCGCGCGCAAGGTCTCGGTCGGCACCAAGGGCTACCGGGAA
AACGCCTATCGCTCGCTGTTCGCCGGTTTCGCCCCGGCCACCGATCCGCGCATCGCGATGGTCGTGGTGATC
GACGAGCCGAGCAAGGCGGGCTACTTCGGCGGCCTGGTGTCGGCGCCGGTGTTCAGCAAGGTCATGGCTGGC
GCGCTGCGCCTGATGAACGTGCCGCCGGATAACCTGCCGACGGCCACCGAACAGCAGCAGGTCAATGCTGCG
CCCGCAAAAGGAGGGCGTGGCTGA
Translation:
MGFPGERVGNLPNHRKWPKAETATLAYGYGLSVTAIQLAHAYAALANDGKSVPLSMTRVDRVPDGVQVISPE
VASTVQGMLQQVVEAQGGVFRAQVPGYHAAGKSGTARKVSVGTKGYRENAYRSLFAGFAPATDPRIAMVVVI
DEPSKAGYFGGLVSAPVFSKVMAGALRLMNVPPDNLPTATEQQQVNAAPAKGGRG*
AnnotationID:6661GeneID:6660
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 15:03:40
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0768,pfam00905
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAN66954.1|AE016324_4 (AE016779) penicillin-binding protein 3 [Pseudomonas putida KT2440]
          Length = 582

 Score =  308 bits (789), Expect = 1e-83
 Identities = 154/203 (75%), Positives = 168/203 (82%), Gaps = 4/203 (1%)








 
Structural Features:






   
Genomic Context:






   
Comment:
Inactivated 2/03/06.  PA14_57430 (GeneID 3150) and PA14_57420 (GeneID 6660) 
replaced by PA14_57425 (GeneID 7387).



















    ReferenceID:16427




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30415




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31459




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6660_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6660
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
8010
                           PA4418_tr
                           translation of PA4418
                           579
                           34.36
                           34.36
                           380
                           1017.0
     

     
     
200799
                           gb|AAG07806.1|AE004856_17
                           (AE004856) penicillin-binding protein 3 [Pseudomonas aeruginosa PAO1]
                           579
                           34.36
                           34.36
                           380
                           1017.0
     

     
     
200800
                           emb|CAA58872.1|
                           (X84053) penicillin-binding protein 3 [Pseudomonas aeruginosa]
                           579
                           34.36
                           34.36
                           380
                           1017.0
     

     
     
200801
                           gb|AAN66954.1|AE016324_4
                           (AE016779) penicillin-binding protein 3 [Pseudomonas putida KT2440]
                           582
                           26.63
                           28.86
                           383
                           794.0
     

     
     
200989
                           gb|AAK20287.1|AF306705_1
                           (AF306705) penicillin-binding protein 2 [Neisseria meningitidis]
                           295
                           26.10
                           37.28
                           106
                           359.0
     

     






      

          
GC ORFID: 49662How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4380439Stop: 4379840

          
Length: 600


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4418 translation of PA4418Homolog Bit Score 396.0

          
Other Homologs:  t_PA4418 translation of PA4418 (BLASTP 396), psyr_15may02_Scaffold12_revised_gene2040 related to: gi|15599614|ref|NP_253108.1| (NC_002516) penicillin-binding protein 3 [Pseudomonas aeruginosa] pir||S54872 penicillin-binding protein 3 - Pseudomonas aeruginosa pir||C83095 penicillin-binding protein 3 PA4418 [imported] - Pseudomonas aeruginosa (-TRUNCATED- (BLASTP 285), t_PA2272 translation of PA2272 (BLASTP 204)

          
GC ORF Sequence

           
TTGGGCTTCCCCGGCGAGCGCGTCGGCAACCTGCCCAACCACCGCAAGTGGCCGAAGGCGGAAACCGCGACC 
CTGGCCTACGGCTACGGTCTCTCGGTAACCGCGATCCAGTTGGCGCATGCCTATGCGGCCCTGGCCAACGAC 
GGCAAGAGCGTGCCGCTGAGCATGACCCGAGTCGACCGCGTGCCGGATGGCGTGCAGGTGATCTCGCCGGAA 
GTGGCTTCCACCGTGCAGGGCATGCTGCAACAAGTGGTCGAGGCCCAGGGcGGGGTGTTCCGCGCCCAGGTG 
CCGGGTTACCACGCCGCCGGCAAGAGCGGGACCGCGCGCAAGGTCTCGGTCGGCACCAAGGGCTACCGGGAA 
AACGCCTATCGCTCGCTGTTCGCCGGTTTCGCCCCGGCCACCGATCCGCGCATCGCGATGGTCGTGGTGATC 
GACGAGCCGAGCAAGGCGGGCTACTTCGGCGGCCTGGTGTCGGCGCCGGTGTTCAGCAAGGTCATGGCTGGC 
GCGCTGCGCCTGATGAACGTGCCGCCGGATAACCTGCCGACGGCCACCGAACAGCAGCAGGTCAATGCTGCG 
CCCGCAAAAGGAGGGCGTGGCTGA