ViewGene
Locus Name:
GeneID:
Location:

GeneID:666
TrivialName: PA14_27430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27430
PAO1 Ortholog Locus:PA2835
Sequence Length:1593
Protein Length:530
Start: 2381838
Stop: 2380246
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06223.1|AE004710_5 (AE004710) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 525/530 (99%), Positives = 527/530 (99%)
Sequence:
ATGACTTCGCTCGCCACCCCGCTCGGCCAGCCGACGCCAACCTCAGCCCCCGCCGCCCAGCCTTTCGGCGCG
CGCATCGTGGTCGGCCTGCTCGGCGTGCTGCTCGCCTCGCTCACCGCCGGTCTCAATGGTCATGTCACCGAG
ATCGCCATGACCGATGTGCGCGGCGCACTCGCCATCGGCCATGACGAAGGCACCTGGCTGACCGTGCTCTAC
GAAGCCACCCAGGTCGCCGCCATGGCATTCGCGCCCTGGTGTTCGGTGACCTTTTCCCTGCGCCGCTTCACG
CTCTTCGCCATCGGCGGCTTCGCCCTGCTGGCCCTGCTCTGTCCGTTCGCGCCGAACCTCGAGAGCCTGCTG
GTCCTGCGCACCCTGCAAGGGTTGATGGCCGGCTGCCTGCCGCCGATGCTGATGACCGTGGCGCTACGCTTC
CTGCCGCCGGGGATAAAGCTCTACGGCCTGGGCGCCTATGCCCTCACCGCGACCTTCGGGCCCAACCTGGGC
CTGCCGCTGGCGGCGTTCTGGTTCGAATACGTCGGCTGGCAGTGGGTGTTCTGGCAGGTCATTCCGCTGTGC
CTGGTAGCGATGGCCGCGGTGTCCCATGGCCTGCCCCAGGACCCGGTGCGCCTGGAACGCTTCCGCCAGTTC
GACGGCATCGGCCTGCTCACCGGTTTCCCGGCGATCTGCGCCCTGGTGATCGGTCTGCTGCAAGGCGAACGC
CTGGACTGGTTCGAGTCGCCGCTGATCTGCCTGCTGCTGGGCAGCGGCAGCCTCCTGCTGGGGCTGTTCCTG
GTCAACGAATGGAGCCACCCGCTGCCGTTCTTCCGCCTGCAGTTGCTGAAGCGGCGCAACCTGACCTTCGCC
CTGATCACCCTGGCCGGCGTGCTGGTGGTGCTCGGCGCGAGCATGGGCGTGCCGACCGAATTCCTCGCCGAA
ATCCGCGGCTACCGCCCCCTGCAGAGCGTACCCATGGTGTTGCTGGTGGCTCTTCCGCAGCTCGTCGCGCTG
CCGCTGGTGGCGGCCCTCTGCAACATCCCGCGGGTCGACTGCCGCTGGGTGCTGGCCTGCGGCCTGTGCCTG
TGCGCCGGTGCCTGCCTGAGCTTCAGCCAACTGACGGCGGACTGGGTGCGCGAGGACTTCTACCTGCCGATG
CTGTTACTGGTGGTCGGCCAGCCGATGGCGGTGATTCCGCTGCTGATGCTCTCCACCAGCGTCATCGCGCCC
ATCGAGGGGCCCTTCGCCTCAGCCTGGTTCAACACCGTCCGCGGCTTCTCCGGGGTAGTCGCCACCGCGGTG
ATCGGCGCCCTCGGCACCGCCCGCGAGCACTACCACTCCAACCGCCTGGTGGATCACCTGGGCAATGCGTCC
CAGGCCGTCGAACTGCGCCTGCAACAGATCGCCGGCCTGCAACCGGGCGCCGACTCCGGCGCGCACTGGCAG
CACCTGGCCGAACAGGCCCGCCAACAGGCCCAGGTGCTGGGCAACGCCGACGTGCTGCTGGCGATGACCGGC
CTGGCCTGCGCCCTGCTGATCCTGATTCCGATCCTGCCGCAACGGGCCTACCCGCCCCGCCCGGTCGCTCCC
ACACACTGA
Translation:
MTSLATPLGQPTPTSAPAAQPFGARIVVGLLGVLLASLTAGLNGHVTEIAMTDVRGALAIGHDEGTWLTVLY
EATQVAAMAFAPWCSVTFSLRRFTLFAIGGFALLALLCPFAPNLESLLVLRTLQGLMAGCLPPMLMTVALRF
LPPGIKLYGLGAYALTATFGPNLGLPLAAFWFEYVGWQWVFWQVIPLCLVAMAAVSHGLPQDPVRLERFRQF
DGIGLLTGFPAICALVIGLLQGERLDWFESPLICLLLGSGSLLLGLFLVNEWSHPLPFFRLQLLKRRNLTFA
LITLAGVLVVLGASMGVPTEFLAEIRGYRPLQSVPMVLLVALPQLVALPLVAALCNIPRVDCRWVLACGLCL
CAGACLSFSQLTADWVREDFYLPMLLLVVGQPMAVIPLLMLSTSVIAPIEGPFASAWFNTVRGFSGVVATAV
IGALGTAREHYHSNRLVDHLGNASQAVELRLQQIAGLQPGADSGAHWQHLAEQARQQAQVLGNADVLLAMTG
LACALLILIPILPQRAYPPRPVAPTH*
AnnotationID:675GeneID:666
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 18:06:42
Gene Name:
Confidence Code:3
GeneProduct:putative multidrug efflux MFS transporter
Cell Localization:()
Synonyms:PA2835
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66895.1|AE016318_2 (AE016778) multidrug efflux MFS transporter, putative [Pseudomonas
           putida KT2440]
          Length = 513

 Score =  621 bits (1601), Expect = e-177
 Identities = 318/531 (59%), Positives = 385/531 (72%), Gaps = 22/531 (4%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1335




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18477




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36249




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:666_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:666
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1122
                           PA2835_tr
                           translation of PA2835
                           530
                           99.05
                           99.43
                           0
                           2724.0
     

     
     
41951
                           gb|AAG06223.1|AE004710_5
                           (AE004710) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           530
                           99.05
                           99.43
                           0
                           2724.0
     

     
     
41952
                           gb|AAN66895.1|AE016318_2
                           (AE016778) multidrug efflux MFS transporter, putative [Pseudomonas putida KT2440]
                           534
                           59.55
                           72.09
                           25
                           1618.0
     

     
     
41953
                           gb|AAL95700.1|AF360362_2
                           (AF360362) TrpA [Pseudomonas putida]
                           534
                           59.36
                           72.28
                           25
                           1611.0
     

     
     
41954
                           emb|CAE92886.1|
                           (AJ617740) putative permease of the major facilitator superfamily [Pseudomonas putida]
                           543
                           41.62
                           57.64
                           32
                           1061.0
     

     






      

          
GC ORFID: 43668How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2835Glimmer Score: 

          
Start: 2572089Stop: 2573681

          
Length: 1593


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2835 translation of PA2835Homolog Bit Score 1053.0

          
Other Homologs:  t_PA2835 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTTCGCTCGCCACCCCGCTCGGCCAGCCGACGCCAACCTCAGCCCCCGCCGCCCAGCCTTTCGGCGCG 
CGCATCGTGGTCGGCCTGCTCGGCGTGCTGCTCGCCTCGCTCACCGCCGGTCTCAATGGTCATGTCACCGAG 
ATCGCCATGACCGATGTGCGCGGCGCACTCGCCATCGGCCATGACGAAGGCACCTGGCTGACCGTGCTCTAC 
GAAGCCACCCAGGTCGCCGCCATGGCATTCGCGCCCTGGTGTTCGGTGACCTTTTCCCTGCGCCGCTTCACG 
CTCTTCGCCATCGGCGGCTTCGCCCTGCTGGCCCTGCTCTGTCCGTTCGCGCCGAACCTCGAGAGCCTGCTG 
GTCCTGCGCACCCTGCAAGGGTTGATGGCCGGCTGCCTGCCGCCGATGCTGATGACCGTGGCGCTACGCTTC 
CTGCCGCCGGGGATAAAGCTCTACGGCCTGGGCGCCTATGCCCTCACCGCGACCTTCGGGCCCAACCTGGGC 
CTGCCGCTGGCGGCGTTCTGGTTCGAATACGTCGGCTGGCAGTGGGTGTTCTGGCAGGTCATTCCGCTGTGC 
CTGGTAGCGATGGCCGCGGTGTCCCATGGCCTGCCCCAGGACCCGGTGCGCCTGGAACGCTTCCGCCAGTTC 
GACGGCATCGGCCTGCTCACCGGTTTCCCGGCGATCTGCGCCCTGGTGATCGGTCTGCTGCAAGGCGAACGC 
CTGGACTGGTTCGAGTCGCCGCTGATCTGCCTGCTGCTGGGCAGCGGCAGCCTCCTGCTGGGGCTGTTCCTG 
GTCAACGAATGGAGCCACCCGCTGCCGTTCTTCCGCCTGCAGTTGCTGAAGCGGCGCAACCTGACCTTCGCC 
CTGATCACCCTGGCCGGCGTGCTGGTGGTGCTCGGCGCGAGCATGGGCGTGCCGACCGAATTCCTCGCCGAA 
ATCCGCGGCTACCGCCCCCTGCAGAGCGTACCCATGGTGTTGCTGGTGGCTCTTCCGCAGCTCGTCGCGCTG 
CCGCTGGTGGCGGCCCTCTGCAACATCCCGCGGGTCGACTGCCGCTGGGTGCTGGCCTGCGGCCTGTGCCTG 
TGCGCCGGTGCCTGCCTGAGCTTCAGCCAACTGACGGCGGACTGGGTGCGCGAGGACTTCTACCTGCCGATG 
CTGTTACTGGTGGTCGGCCAGCCGATGGCGGTGATTCCGCTGCTGATGCTCTCCACCAGCGTCATCGCGCCC 
ATCGAGGGGCCCTTCGCCTCAGCCTGGTTCAACACCGTCCGCGGCTTCTCCGGGGTAGTCGCCACCGCGGTG 
ATCGGCGCCCTCGGCACCGCCCGCGAGCACTACCACTCCAACCGCCTGGTGGATCACCTGGGCAATGCGTCC 
CAGGCCGTCGAACTGCGCCTGCAACAGATCGCCGGCCTGCAACCGGGCGCCGACTCCGGCGCGCACTGGCAG 
CACCTGGCCGAACAGGCCCGCCAACAGGCCCAGGTGCTGGGCAACGCCGACGTGCTGCTGGCGATGACCGGC 
CTGGCCTGCGCCCTGCTGATCCTGATTCCGATCCTGCCGCAACGGGCCTACCCGCCCCGCCCGGTCGCTCCC 
ACACACTGA