ViewGene
Locus Name:
GeneID:
Location:

GeneID:6658
TrivialName: PA14_57350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57350
PAO1 Ortholog Locus:
Sequence Length:1596
Protein Length:531
Start: 5109677
Stop: 5111272
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAB84182.1| (AL162754) IgA1 protease [Neisseria meningitidis Z2491]
Identities = 98/436 (22%), Positives = 164/436 (37%), Gaps = 58/436 (13%)
Sequence:
ATGATCAGGACATTACCTTTCATCGGCAAAGTCCTCTTCGTTGAACTCATATTCCTCGCTACCCAGGTGGGT
TCGCCGTTCCCATTCGATGCGCAGCAACATCCCCAGACAGGCACAGCAGATCACCAGCGAACTGCCGCCGTA
GCTGAGGAACGGCAGGGTCAGGCCCTTGGTCGGCAGCAGGCCGACGTTCACCCCGATGTTGATCAGGAACTG
GCCGATCCAGAGGAAGGCCAGGCCGTAGGCCACGTAGGCGGAGAAGAACTGCTTGGCCTGCTCGGCCCAGAT
GCCGATGTACAGCGCGCGCAGGCTGACGAACACGAACAGGGCGACGGTCGCCAGGGCGCCGACGATGCCCAG
CTCCTCTGCAAGCACGGCGAAGACGAAGTCGGTGTGCGCCTCCGGCAGGTAGAACTGCTTCTGGATGCTGTT
GCCCAGTCCCATGCCCAACCAGCCGCCGCGGCCGAAGGCGATCAGCGCCTGGCTCAACTGATAGCCGGCGCC
GAACTGGTCGGCCCAGGGGTCGGTGAAGTTGGTCAGGCGTGCCATCCGGTAGGGCTGGGTCTGGATCAGCAG
GACCACCGCGCCGACCGCCAGCAGCACCATCAGGCCGAAGCGGAACAGCCCCACCCCGCCGAGGAACAGCAT
GGCCGCGGCAGCGCCCATCATTACCACGGTGGCGCCGAAGTCCGGCTCGCGCAGCAGCAGGCCGGCCATCGG
CAGCAACACCACGAAGGGCTTGAAGAAGCCCATCCAGCTTTCCCGGACCTCCTGCTGGCGGCGGATCAGGTA
GCCGGCCATGAAGATCACCACGCAGACCTTGGCGATCTCCGAAGGCTGGATGTTGAACAGGCCGAAGCCGAT
CCAGCGCATCGAGCCGTTCACCTCGCGGCCGATACCGGGGGTGATCACCAGCACCAGCAGGCCGAAGGCGAC
CAGCAACAGCTTCCAGCCCCAACGCTGCCAGGTGGCCATCGGGACCATCATGGTCAGGCCGCAGGAAATCAG
GCCGATCACCAGGTAGATCAGGTGACGGACGGAGAAGTACAGCGGGTTGCCCGACTGCGCCGCCGCCACCTC
GGAAGAGGCGGAAGTCACCATCACCAGGCCGAGGCCGAGCAGCGCCAGGCAACCCGCCAGCAGCGGGAAGTC
CAGGTCGATGCCGTGCCGGCTCAACAGCGGCGACGGGAAGGGGCGCAACACCGACAGCATCACGCTAGCTCC
TCTACGGCTTTGGCGAACAGGCGTCCGCGTTCTTCGAAGTTCTTGAACATGTCCAGGCTCGCGCAGGCCGGC
GACAACAGCACCGCATCGCCTTCGCGGGCCAGCTCGGCGGCCTGCCGGACTGCTTCGTCCAGCGTTGCGACG
CGCACCAGCGGTACCGCGTTGCCCAGTGCCTGGGCAATCAGCCCGGCGTCACGGCCAAGCAGTACCACCGCC
CGGCAGAAGCGCGCGACCGGCTCGCGCAGGTCATGGAAATCGGCGCCCTTGCCGTCTCCGCCGGCGAGCAGC
ACCAGCTTGCCGTCGATGTCGGCACCCAGCCCCTCGATCGCCGCCAGGGCGGCGCCGACGTTGGTGGCCTTG
GAATCGTCGTAG
Translation:
MIRTLPFIGKVLFVELIFLATQVGSPFPFDAQQHPQTGTADHQRTAAVAEERQGQALGRQQADVHPDVDQEL
ADPEEGQAVGHVGGEELLGLLGPDADVQRAQADEHEQGDGRQGADDAQLLCKHGEDEVGVRLRQVELLLDAV
AQSHAQPAAAAEGDQRLAQLIAGAELVGPGVGEVGQACHPVGLGLDQQDHRADRQQHHQAEAEQPHPAEEQH
GRGSAHHYHGGAEVRLAQQQAGHRQQHHEGLEEAHPAFPDLLLAADQVAGHEDHHADLGDLRRLDVEQAEAD
PAHRAVHLAADTGGDHQHQQAEGDQQQLPAPTLPGGHRDHHGQAAGNQADHQVDQVTDGEVQRVARLRRRHL
GRGGSHHHQAEAEQRQATRQQREVQVDAVPAQQRRREGAQHRQHHASSSTALANRRPRSSKFLNMSRLAQAG
DNSTASPSRASSAACRTASSSVATRTSGTALPSAWAISPASRPSSTTARQKRATGSRRSWKSAPLPSPPASS
TSLPSMSAPSPSIAARAAPTLVALESS*
AnnotationID:6659GeneID:6658
AnnotatorUID: diggins
Modification Date/Time: 2004-03-17 19:07:53
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:13083




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30411




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49660How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4373355Stop: 4374950

          
Length: 1596


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: psyr_15may02_Scaffold1_revised_gene322 related to: gi|9246924|gb|AAF86203.1|AF238888_1 (AF238888) putative VrrB [Bacillus cereus]Homolog Bit Score 518.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene322 related to: gi|9246924|gb|AAF86203.1|AF238888_1 (AF238888) putative VrrB [Bacillus cereus] (BLASTP 518)

          
GC ORF Sequence

           
ATGATCAGGACATTACCTTTCATCGGCAAAGTCCTCTTCGTTGAACTCATATTCCTCGCTACCCAGGTGGGT 
TCGCCGTTCCCATTCGATGCGCAGCAACATCCCCAGACAGGCACAGCAGATCACCAGCGAACTGCCGCCGTA 
GCTGAGGAACGGCAGGGTCAGGCCCTTGGTCGGCAGCAGGCCGACGTTCACCCCGATGTTGATCAGGAACTG 
GCCGATCCAGAGGAAGGCCAGGCCGTAGGCCACGTAGGCGGAGAAGAACTGCTTGGCCTGCTCGGCCCAGAT 
GCCGATGTACAGCGCGCGCAGGCTGACGAACACGAACAGGGCGACGGTCGCCAGGGCGCCGACGATGCCCAG 
CTCCTCTGCAAGCACGGCGAAGACGAAGTCGGTGTGCGCCTCCGGCAGGTAGAACTGCTTCTGGATGCTGTT 
GCCCAGTCCCATGCCCAACCAGCCGCCGCGGCCGAAGGCGATCAGCGCCTGGCTCAACTGATAGCCGGCGCC 
GAACTGGTCGGCCCAGGGGTCGGTGAAGTTGGTCAGGCGTGCCATCCGGTAGGGCTGGGTCTGGATCAGCAG 
GACCACCGCGCCGACCGCCAGCAGCACCATCAGGCCGAAGCGGAACAGCCCCACCCCGCCGAGGAACAGCAT 
GGCCGCGGCAGCGCCCATCATTACCACGGTGGCGCCGAAGTCCGGCTCGCGCAGCAGCAGGCCGGCCATCGG 
CAGCAACACCACGAAGGGCTTGAAGAAGCCCATCCAGCTTTCCCGGACCTCCTGCTGGCGGCGGATCAGGTA 
GCCGGCCATGAAGATCACCACGCAGACCTTGGCGATCTCCGAAGGCTGGATGTTGAACAGGCCGAAGCCGAT 
CCAGCGCATCGAGCCGTTCACCTCGCGGCCGATACCGGGGGTGATCACCAGCACCAGCAGGCCGAAGGCGAC 
CAGCAACAGCTTCCAGCCCCAACGCTGCCAGGTGGCCATCGGGACCATCATGGTCAGGCCGCAGGAAATCAG 
GCCGATCACCAGGTAGATCAGGTGACGGACGGAGAAGTACAGCGGGTTGCCCGACTGCGCCGCCGCCACCTC 
GGAAGAGGCGGAAGTCACCATCACCAGGCCGAGGCCGAGCAGCGCCAGGCAACCCGCCAGCAGCGGGAAGTC 
CAGGTCGATGCCGTGCCGGCTCAACAGCGGCGACGGGAAGGGGCGCAACACCGACAGCATCACGCTAGCTCC 
TCTACGGCTTTGGCGAACAGGCGTCCGCGTTCTTCGAAGTTCTTGAACATGTCCAGGCTCGCGCAGGCCGGC 
GACAACAGCACCGCATCGCCTTCGCGGGCCAGCTCGGCGGCCTGCCGGACTGCTTCGTCCAGCGTTGCGACG 
CGCACCAGCGGTACCGCGTTGCCCAGTGCCTGGGCAATCAGCCCGGCGTCACGGCCAAGCAGTACCACCGCC 
CGGCAGAAGCGCGCGACCGGCTCGCGCAGGTCATGGAAATCGGCGCCCTTGCCGTCTCCGCCGGCGAGCAGC 
ACCAGCTTGCCGTCGATGTCGGCACCCAGCCCCTCGATCGCCGCCAGGGCGGCGCCGACGTTGGTGGCCTTG 
GAATCGTCGTAG