ViewGene
Locus Name:
GeneID:
Location:

GeneID:6656
TrivialName: PA14_57280
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57280
PAO1 Ortholog Locus:
Sequence Length:882
Protein Length:293
Start: 5104042
Stop: 5103163
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
Inactivated 2/01/06. PA14_57280 (GeneID 6656) and PA14_57270 (GeneID 6655) Replaced by PA14_57275 (GeneID 7381). Homology: gb|AAG07795.1|AE004856_6 (AE004856) cell division protein FtsZ [Pseudomonas aeruginosa PAO1]
Identities = 245/248 (98%), Positives = 246/248 (99%)
Sequence:
ATGTTTGAACTGGTCGATAACATCGCACAAACCGCCGTCATAAAAGTGATCGGTGTAGGTGGTGGTGGCGGC
AACGCCGTCAATCACATGGCCAAGAACAACGTCGAGGGCGTCGAGTTCATCTGCGCCAACACCGACGCACAA
GCGCTGAAGAACATCGCGGCGCGCACCGTTCTGCAACTCGGCCCGGGCGTCACCAAGGGGCTGGGTGCCGGC
GCCAATCCGGAAGTCGGTCGTCAGGCGGCTCTGGAAGATCGCGAGCGCATTTCCGAAGTGCTGGAAGGCGCC
GACATGGTCTTCATCACCACCGGCATGGGTGGCGGCACCGGTACCGGCGCCGCGCCGATCATCGCCGAAGTG
GCGAAGGAAATGGGCATCCTCACCGTCGCGGTGGTGACCCGTCCGTTCCCGTTCGAAGGTCGCAAGCGCATG
CAGATCGCCGACGAGGGCATCCGCGCGCTGGCCGAGAGCGTCGATTCGCTGATCACCATCCCGAACGAGAAG
CTGCTGACCATCCTCGGCAAGGATGCCAGCTTGCTGGCTGCCTTCGCCAAGGCCGATGACGTGCTGGCCGGT
GCCGTGCGCGGTATCTCCGACATCATCAAGCGTCCGGGCATGATCAACGTCGACTTCGCCGACGTGAAGACC
GTCATGAGCGAAATGGGCATGGCGATGATGGGTACCGGCTGCGCCAGCgGTCCGAACCGTgcccGcgaggcc
cccgagGcggcaatcccgcaccCcGCTGCtgggagaCGTCaaccTGCAGGgCgCGCGCGgcatcatggTGAA
CATCACccgcgggtccggacctgtCCcctggCGAGTACTCCGATGTCGGCAACATCATCGAACAGTTCGCTT
CCGAGCACGCCACTGTGA
Translation:
MFELVDNIAQTAVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIAARTVLQLGPGVTKGLGAG
ANPEVGRQAALEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTVAVVTRPFPFEGRKRM
QIADEGIRALAESVDSLITIPNEKLLTILGKDASLLAAFAKADDVLAGAVRGISDIIKRPGMINVDFADVKT
VMSEMGMAMMGTGCASGPNRAREAPEAAIPHPAAGRRQPAGRARHHGEHHPRVRTCPLASTPMSATSSNSSL
PSTPL*
AnnotationID:6657GeneID:6656
AnnotatorUID: danlee
Modification Date/Time: 2006-02-01 17:05:12
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0206
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAO57852.1| (AE016871) cell division protein FtsZ [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 395

 Score =  445 bits (1145), Expect = e-124
 Identities = 227/248 (91%), Positives = 239/248 (96%)

>gb|AAN66965.1|AE016325_1 (AE016779) cell division protein FtsZ [Pseudomonas putida KT2440]
          Length = 398

 Score =  443 bits (1139), Expect = e-124
 Identities = 226/248 (91%), Positives = 238/248 (95%)






 
Structural Features:
COG0206, FtsZ, Cell division GTPase 
[Cell division and chromosome partitioning]
CD-Length = 338 residues, only  73.1% aligned
Score =  297 bits (761), Expect = 2e-81
Identities = 149/248 (60%), Positives = 179/248 (72%), Gaps = 1/248 (0%)







   
Genomic Context:






   
Comment:
Inactivated 2/01/06.  PA14_57280 (GeneID 6656) and PA14_57270 (GeneID 6655) 
replaced by PA14_57275 (GeneID 7381)


















    ReferenceID:13080




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28261




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6656_cdd.html


    		




 
URL:

















    ReferenceID:30407




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38117




  
Author/Investigator(s):
        Azzolina BA, Yuan X, Anderson MS, El-Sherbeini M.





  
Title:
        The cell wall and cell division gene cluster in the Mra operon of Pseudomonas aeruginosa: cloning, production, and purification of active enzymes.




  
PubMed:
        11281713


MedLine:
        




    
Source:
Protein Expr Purif. 2001 Apr;21(3):393-400.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11281713

















    ReferenceID:38118




  
Author/Investigator(s):
        Kobayashi M, Asai Y, Hatakeyama K, Kijima N, Wachi M, Nagai K, Yukawa H.





  
Title:
        Cloning, sequencing, and characterization of the ftsZ gene from coryneform bacteria.




  
PubMed:
        9240446


MedLine:
        




    
Source:
Biochem Biophys Res Commun. 1997 Jul 18;236(2):383-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9240446









           
Homologs By Global Alignment 

           

       



     
Gene ID:6656
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
8009
                           PA4407_tr
                           translation of PA4407
                           395
                           65.31
                           66.83
                           103
                           1195.0
     

     
     
200340
                           gb|AAG07795.1|AE004856_6
                           (AE004856) cell division protein FtsZ [Pseudomonas aeruginosa PAO1]
                           395
                           65.31
                           66.83
                           103
                           1195.0
     

     
     
200341
                           gb|AAA95993.2|
                           (U19797) FtsZ [Pseudomonas aeruginosa]
                           395
                           65.31
                           66.83
                           103
                           1195.0
     

     
     
200342
                           gb|AAO57852.1|
                           (AE016871) cell division protein FtsZ [Pseudomonas syringae pv. tomato str. DC3000]
                           396
                           60.10
                           64.89
                           104
                           1126.0
     

     
     
200345
                           gb|AAO85489.2|
                           (AF493071) bacterium division protein FtsZ [endosymbiont of Crithidia deanei]
                           399
                           58.89
                           63.90
                           107
                           1109.0
     

     






      

          
GC ORFID: 49658How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4367720Stop: 4366839

          
Length: 882


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4407 translation of PA4407Homolog Bit Score 471.0

          
Other Homologs:  t_PA4407 translation of PA4407 (BLASTP 471), psyr_15may02_Scaffold1_revised_gene1133 related to: gi|3915698|sp|Q59692|FTSZ_PSEPU CELL DIVISION PROTEIN FTSZ pir||T10476 cell division protein ftsZ - Pseudomonas putida gb|AAC24467.1| (U29400) cell division protein FtsZ [Pseudomonas putida] (BLASTP 445)

          
GC ORF Sequence

           
ATGTTTGAACTGGTCGATAACATCGCACAAACCGCCGTCATAAAAGTGATCGGTGTAGGTGGTGGTGGCGGC 
AACGCCGTCAATCACATGGCCAAGAACAACGTCGAGGGCGTCGAGTTCATCTGCGCCAACACCGACGCACAA 
GCGCTGAAGAACATCGCGGCGCGCACCGTTCTGCAACTCGGCCCGGGCGTCACCAAGGGGCTGGGTGCCGGC 
GCCAATCCGGAAGTCGGTCGTCAGGCGGCTCTGGAAGATCGCGAGCGCATTTCCGAAGTGCTGGAAGGCGCC 
GACATGGTCTTCATCACCACCGGCATGGGTGGCGGCACCGGTACCGGCGCCGCGCCGATCATCGCCGAAGTG 
GCGAAGGAAATGGGCATCCTCACCGTCGCGGTGGTGACCCGTCCGTTCCCGTTCGAAGGTCGCAAGCGCATG 
CAGATCGCCGACGAGGGCATCCGCGCGCTGGCCGAGAGCGTCGATTCGCTGATCACCATCCCGAACGAGAAG 
CTGCTGACCATCCTCGGCAAGGATGCCAGCTTGCTGGCTGCCTTCGCCAAGGCCGATGACGTGCTGGCCGGT 
GCCGTGCGCGGTATCTCCGACATCATCAAGCGTCCGGGCATGATCAACGTCGACTTCGCCGACGTGAAGACC 
GTCATGAGCGAAATGGGCATGGCGATGATGGGTACCGGCTGCGCCAGCgGTCCGAACCGTgcccGcgaggcc 
cccgagGcggcaatcccgcaccCcGCTGCtgggagaCGTCaaccTGCAGGgCgCGCGCGgcatcatggTGAA 
CATCACccgcgggtccggacctgtCCcctggCGAGTACTCCGATGTCGGCAACATCATCGAACAGTTCGCTT 
CCGAGCACGCCACTGTGA