ViewGene
Locus Name:
GeneID:
Location:

GeneID:6655
TrivialName: PA14_57270
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57270
PAO1 Ortholog Locus:
Sequence Length:294
Protein Length:97
Start: 5103151
Stop: 5102858
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Inactivated 2/01/06. PA14_57280 (GeneID 6656) and PA14_57270 (GeneID 6655) replaced by PA14_57275 (GeneID 7381). Homology: gb|AAG07795.1|AE004856_6 (AE004856) cell division protein FtsZ [Pseudomonas aeruginosa PAO1]
Identities = 96/97 (98%), Positives = 97/97 (100%)
Sequence:
GTGATCGACGCGGACATGCGCGATGAGCTGCACGTCACCGTAGTCGCCACCGGCCTGGGCGCGCGCCTGGAG
AAACCGGTGAAGGTCGTCGACAACACCGTGCAGGGCAGTGCAGCCCAGGCAGCCGCTCCGGCCCAGCGCGAG
CAGCAGTCGGTGAACTACCGCGACCTCGACCGTCCTACCGTGATGCGCAACCAGTCTCACGGCAGCGCGGCG
ACCGCGGCCAAGCTGAACCCGCAGGATGACCTGGATTACCTGGATATCCCGGCGTTCCTGCGTCGTCAGGCC
GATTGA
Translation:
MIDADMRDELHVTVVATGLGARLEKPVKVVDNTVQGSAAQAAAPAQREQQSVNYRDLDRPTVMRNQSHGSAA
TAAKLNPQDDLDYLDIPAFLRRQAD*
AnnotationID:6656GeneID:6655
AnnotatorUID: danlee
Modification Date/Time: 2006-02-01 17:05:44
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAN66965.1|AE016325_1 (AE016779) cell division protein FtsZ [Pseudomonas putida KT2440]
          Length = 398

 Score =  152 bits (383), Expect = 5e-37
 Identities = 77/101 (76%), Positives = 86/101 (85%), Gaps = 4/101 (3%)

>gb|AAC24467.1| (U29400) cell division protein FtsZ [Pseudomonas putida]
          Length = 400

 Score =  148 bits (374), Expect = 5e-36
 Identities = 79/104 (75%), Positives = 86/104 (82%), Gaps = 8/104 (7%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:
Inactivated 2/01/06.  PA14_57280 (GeneID 6656) and PA14_57270 (GeneID 6655) 
replaced by PA14_57275 (GeneID 7381)



















    ReferenceID:16424




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30405




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38116




  
Author/Investigator(s):
        Azzolina BA, Yuan X, Anderson MS, El-Sherbeini M.





  
Title:
        The cell wall and cell division gene cluster in the Mra operon of Pseudomonas aeruginosa: cloning, production, and purification of active enzymes.




  
PubMed:
        11281713


MedLine:
        




    
Source:
Protein Expr Purif. 2001 Apr;21(3):393-400.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11281713

















    ReferenceID:38119




  
Author/Investigator(s):
        Kobayashi M, Asai Y, Hatakeyama K, Kijima N, Wachi M, Nagai K, Yukawa H.





  
Title:
        Cloning, sequencing, and characterization of the ftsZ gene from coryneform bacteria.




  
PubMed:
        9240446


MedLine:
        




    
Source:
Biochem Biophys Res Commun. 1997 Jul 18;236(2):383-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9240446









           
Homologs By Global Alignment 

           

       



     
Gene ID:6655
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
8008
                           PA4407_tr
                           translation of PA4407
                           394
                           24.61
                           24.61
                           297
                           486.0
     

     
     
200333
                           gb|AAG07795.1|AE004856_6
                           (AE004856) cell division protein FtsZ [Pseudomonas aeruginosa PAO1]
                           394
                           24.61
                           24.61
                           297
                           486.0
     

     
     
200334
                           gb|AAA95993.2|
                           (U19797) FtsZ [Pseudomonas aeruginosa]
                           394
                           24.61
                           24.61
                           297
                           486.0
     

     
     
200335
                           gb|AAN66965.1|AE016325_1
                           (AE016779) cell division protein FtsZ [Pseudomonas putida KT2440]
                           399
                           20.05
                           22.05
                           303
                           392.0
     

     
     
200336
                           gb|AAC24467.1|
                           (U29400) cell division protein FtsZ [Pseudomonas putida]
                           401
                           19.95
                           21.44
                           305
                           384.0
     

     






      

          
GC ORFID: 49657How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4366827Stop: 4366534

          
Length: 294


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4407 translation of PA4407Homolog Bit Score 191.0

          
Other Homologs:  t_PA4407 translation of PA4407 (BLASTP 191), psyr_15may02_Scaffold1_revised_gene1133 related to: gi|3915698|sp|Q59692|FTSZ_PSEPU CELL DIVISION PROTEIN FTSZ pir||T10476 cell division protein ftsZ - Pseudomonas putida gb|AAC24467.1| (U29400) cell division protein FtsZ [Pseudomonas putida] (BLASTP 146)

          
GC ORF Sequence

           
GTGATCGACGCGGACATGCGCGATGAGCTGCACGTCACCGTAGTCGCCACCGGCCTGGGCGCGCGCCTGGAG 
AAACCGGTGAAGGTCGTCGACAACACCGTGCAGGGCAGTGCAGCCCAGGCAGCCGCTCCGGCCCAGCGCGAG 
CAGCAGTCGGTGAACTACCGCGACCTCGACCGTCCTACCGTGATGCGCAACCAGTCTCACGGCAGCGCGGCG 
ACCGCGGCCAAGCTGAACCCGCAGGATGACCTGGATTACCTGGATATCCCGGCGTTCCTGCGTCGTCAGGCC 
GATTGA