ViewGene

Locus Name:
GeneID:
Location:

GeneID:6652
TrivialName: PA14_57120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57120
PAO1 Ortholog Locus:
Sequence Length:1983
Protein Length:660
Start: 5088638
Stop: 5090620
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens]
Identities = 110/377 (29%), Positives = 139/377 (36%), Gaps = 51/377 (13%)
Sequence:
ATGCATTACCTCCATTTCTCGAAAAAACACCCCTCCCTTCCGCAACGGAAACGGGACGGGCTTGCAGATTCC
TGCCCGGACGCCGTGGGCCGACGTTCCCGGGCCTGGATACGAATCGGCGCAGCGCGGACGAACCGACGCTGC
GCCGACAGGGGCGGACAACGCGGGAGAGGCCGCGGCGGCGCTACTCCCTATTGCGATGCCCGGGATGGCGAG
AGGTTCCGAAAAACCTCGTCAATCGCGGAAGTTGGTGAACTGCAGCGGCATGCCGAGGGATTCGCCGCGCAG
CAGGGCGATGGCCTCCTGCAGATCGTCGCGCTTCTTGCCGGTGACGCGCACCTGCTCGCCCTGGATGGCGGC
CTGGACCTTGAGCTTGCGCTCCTTGATCAGGCCGACGATCTTCTTCGCCAGGTCCTTGTCGATGCCCTCGCG
GAAGTTCACTTCCTGCTTGACCACCTTGCCCGACGGGTAGGCATCCTTGATCTCCATGCACTGGCTGTCGAC
CTTGCGCTTGACCAGGTTGGAACGCAGGATGTCGAGCATCTGCTCGAGCATGAAATCGGCTTCGGCGGTGAG
GGTCACCGACTTGTCCTTGGCTTCGAAACTGCATTTGCCTTTCAGGTCGAAACGGCGATCCAGTTCCTTGAT
GGCGTTGTCCACGGCGTTGGTCAACTCGTGTTTGTCCAGTTCGGACACCACGTCGAACGAAGGCATGTCATC
TCTCCAGATGGACGGCGCGACAGGGTTCACAGACGGAACCGCGCCTGGCTTGACGGTAAAAAATGCCCGCCC
ATTATAACCGAGCCCTCGCGAGCGAATGCCCGCCGGTGTGGCGGAGACCGACGATTTCTTCCCGATGGCGCG
CGCGACCGCGGCCGGGACCCGGCCTCCCGCGACGAACCGGGCCCTTGCCGGCAGCGTACCGGCGCCCATCCT
CTTCTCGAGTCCGTTCATGCCCAACCCCGATCTCAGCATCCTGGTCGTCGACGACGCCAAGTTTTCCAGCGC
CATGATCGGCCGCGCCCTCAGCCAGGCCGGCTACCAGGACATCCGCTTCGCCAGCAGCGCCAGCGAGGCCCT
GCAGCAGCTCGAACAACGCCCGGTCAGCGTGCTCCTGGCCGACTGGCTGATGCCGGAGATGGACGGCCTGGA
ACTGACCGCCCGGGTCCGCCAACTGGACGAAAGCATCAACCACTACACCTATATCGTCCTGCTCACCGGCAA
GGAAGGCGAGAACGTCCTCGGCGAGGCCTTCGACCGCGGCGTCGACGACTTCGTCAGCAAGGCCGCGATGAA
CGAGCAACTGGTGCCGCGCATCTACGCAGCCGACCGCCTGTGCAACACCCTGCAACGGTTGCTGGTGGAAAA
CCGCCTGCTCACCgAAAACATCGCGCGGATGGAAGAACGCAACCTGGTGGATACCCTCACCGGCCTCGGCAA
TCCCCGCTACCTGCGCCAGAAGCTGGCCGACAGCCTGCGCCAGGTGGAAACCCGCGGTGGAGCGCTGTGCTA
CCTGCTGGTCGGCATGCCCGAGGCACCGGTCCTGCGCCAGCGGCACGGCGAGGCCTTCCATCGCGAGCTGCT
GCTCGGCGTGGCCAGGCGCCTGCAACAGCTGGTCCGGCCGCTGGACGTGCTGGTGCGCCTGGACGAGCAGCA
TTTCGCCCTGATCACCTTGGTGGAGGACCTGCACGAATGCTCGTCGAGCAGCTTCAAGCGGCTGCACGACGG
GCTCAACCTGAAGGCCTTCAAGACCAGCGAAGGCTTCATCAGCCTGAAAGCCGGCATCGCCATGCTCGGCCT
CGACAGCGGGGCATTGCCGCTGGGCATCGACGAACTGCTGCAGCGCACCGAGGCCCTGTTGCCCGATGCCTA
TGCCAGCGGCAGGATCGCAACCTGCCGGCTACCGGCACTGCGCTAGACTTCGCTCTATCGTCAGCCATTCGC
AGTAGCCACCATGACCTGGCATATCCTCGGCGCCGGTAG
Translation:
MHYLHFSKKHPSLPQRKRDGLADSCPDAVGRRSRAWIRIGAARTNRRCADRGGQRGRGRGGATPYCDARDGE
RFRKTSSIAEVGELQRHAEGFAAQQGDGLLQIVALLAGDAHLLALDGGLDLELALLDQADDLLRQVLVDALA
EVHFLLDHLARRVGILDLHALAVDLALDQVGTQDVEHLLEHEIGFGGEGHRLVLGFETAFAFQVETAIQFLD
GVVHGVGQLVFVQFGHHVERRHVISPDGRRDRVHRRNRAWLDGKKCPPIITEPSRANARRCGGDRRFLPDGA
RDRGRDPASRDEPGPCRQRTGAHPLLESVHAQPRSQHPGRRRRQVFQRHDRPRPQPGRLPGHPLRQQRQRGP
AAARTTPGQRAPGRLADAGDGRPGTDRPGPPTGRKHQPLHLYRPAHRQGRRERPRRGLRPRRRRLRQQGRDE
RATGAAHLRSRPPVQHPATVAGGKPPAHRKHRADGRTQPGGYPHRPRQSPLPAPEAGRQPAPGGNPRWSAVL
PAGRHARGTGPAPAARRGLPSRAAARRGQAPATAGPAAGRAGAPGRAAFRPDHLGGGPARMLVEQLQAAARR
AQPEGLQDQRRLHQPESRHRHARPRQRGIAAGHRRTAAAHRGPVARCLCQRQDRNLPATGTALDFALSSAIR
SSHHDLAYPRRR*
AnnotationID:6653GeneID:6652
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 13:01:01
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:13072
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27267
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:6652_cdd.html
URL:
ReferenceID:30399
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49654How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 4352314Stop: 4354296
Length: 1983
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCATTACCTCCATTTCTCGAAAAAACACCCCTCCCTTCCGCAACGGAAACGGGACGGGCTTGCAGATTCC
TGCCCGGACGCCGTGGGCCGACGTTCCCGGGCCTGGATACGAATCGGCGCAGCGCGGACGAACCGACGCTGC
GCCGACAGGGGCGGACAACGCGGGAGAGGCCGCGGCGGCGCTACTCCCTATTGCGATGCCCGGGATGGCGAG
AGGTTCCGAAAAACCTCGTCAATCGCGGAAGTTGGTGAACTGCAGCGGCATGCCGAGGGATTCGCCGCGCAG
CAGGGCGATGGCCTCCTGCAGATCGTCGCGCTTCTTGCCGGTGACGCGCACCTGCTCGCCCTGGATGGCGGC
CTGGACCTTGAGCTTGCGCTCCTTGATCAGGCCGACGATCTTCTTCGCCAGGTCCTTGTCGATGCCCTCGCG
GAAGTTCACTTCCTGCTTGACCACCTTGCCCGACGGGTAGGCATCCTTGATCTCCATGCACTGGCTGTCGAC
CTTGCGCTTGACCAGGTTGGAACGCAGGATGTCGAGCATCTGCTCGAGCATGAAATCGGCTTCGGCGGTGAG
GGTCACCGACTTGTCCTTGGCTTCGAAACTGCATTTGCCTTTCAGGTCGAAACGGCGATCCAGTTCCTTGAT
GGCGTTGTCCACGGCGTTGGTCAACTCGTGTTTGTCCAGTTCGGACACCACGTCGAACGAAGGCATGTCATC
TCTCCAGATGGACGGCGCGACAGGGTTCACAGACGGAACCGCGCCTGGCTTGACGGTAAAAAATGCCCGCCC
ATTATAACCGAGCCCTCGCGAGCGAATGCCCGCCGGTGTGGCGGAGACCGACGATTTCTTCCCGATGGCGCG
CGCGACCGCGGCCGGGACCCGGCCTCCCGCGACGAACCGGGCCCTTGCCGGCAGCGTACCGGCGCCCATCCT
CTTCTCGAGTCCGTTCATGCCCAACCCCGATCTCAGCATCCTGGTCGTCGACGACGCCAAGTTTTCCAGCGC
CATGATCGGCCGCGCCCTCAGCCAGGCCGGCTACCAGGACATCCGCTTCGCCAGCAGCGCCAGCGAGGCCCT
GCAGCAGCTCGAACAACGCCCGGTCAGCGTGCTCCTGGCCGACTGGCTGATGCCGGAGATGGACGGCCTGGA
ACTGACCGCCCGGGTCCGCCAACTGGACGAAAGCATCAACCACTACACCTATATCGTCCTGCTCACCGGCAA
GGAAGGCGAGAACGTCCTCGGCGAGGCCTTCGACCGCGGCGTCGACGACTTCGTCAGCAAGGCCGCGATGAA
CGAGCAACTGGTGCCGCGCATCTACGCAGCCGACCGCCTGTGCAACACCCTGCAACGGTTGCTGGTGGAAAA
CCGCCTGCTCACCgAAAACATCGCGCGGATGGAAGAACGCAACCTGGTGGATACCCTCACCGGCCTCGGCAA
TCCCCGCTACCTGCGCCAGAAGCTGGCCGACAGCCTGCGCCAGGTGGAAACCCGCGGTGGAGCGCTGTGCTA
CCTGCTGGTCGGCATGCCCGAGGCACCGGTCCTGCGCCAGCGGCACGGCGAGGCCTTCCATCGCGAGCTGCT
GCTCGGCGTGGCCAGGCGCCTGCAACAGCTGGTCCGGCCGCTGGACGTGCTGGTGCGCCTGGACGAGCAGCA
TTTCGCCCTGATCACCTTGGTGGAGGACCTGCACGAATGCTCGTCGAGCAGCTTCAAGCGGCTGCACGACGG
GCTCAACCTGAAGGCCTTCAAGACCAGCGAAGGCTTCATCAGCCTGAAAGCCGGCATCGCCATGCTCGGCCT
CGACAGCGGGGCATTGCCGCTGGGCATCGACGAACTGCTGCAGCGCACCGAGGCCCTGTTGCCCGATGCCTA
TGCCAGCGGCAGGATCGCAACCTGCCGGCTACCGGCACTGCGCTAGACTTCGCTCTATCGTCAGCCATTCGC
AGTAGCCACCATGACCTGGCATATCCTCGGCGCCGGTAG