ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6651

TrivialName: PA14_57090

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_57090

PAO1 Ortholog Locus:

Sequence Length: 2025

Protein Length: 674

Start: 5087725

Stop: 5085701

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 102/371 (27%), Positives = 138/371 (37%), Gaps = 68/371 (18%)

Sequence:

GTGACCCGGCGCCGGCGTCTCGCTGGACGGCGCGCGGCGCAGCCACAACCAGCCGATCAGCAGCAGGGTGGG
AATGCCCATCACCGCGGTGACGTAGAAGAAGTGCTCGTAGCCGAGGCTCTCGACCATGGTTCCGGAGTAGCC
GCCGATGAAGCGCGGCAGCAGGAGCATGGTCGAGCTGAGCATGGCGTACTGGGTGGCGGAGAACTTCAGGTT
GGTCAGGCTCGACAGGTAGGCGACGAAGGCCGAGGCGGCGAGGCCGCCGCTGAAGTTGTCGAGGGTGATGGT
CATCACCAGCATCAGCACGTGCGGCTCGAGCGCCATCACCAGGCTGATCACGTCATGGCTGGGCAGGGCCTC
GGCGTGCAGCGGGCCGAGCTGGGCGAGCATGGCGAACAGCAGGTTGGTGGCAGCCGAAGCGGCACCGCCGAT
GAACAGGATGGAGAGGATGCTGAAGCGGGCGATCAGCACCCCGCCGGCGGCGGCGCCGATCAGGGTCATGAG
TACGCCGAAGACCTTGCTGACACTGGCGATGACTTCCTTGGAGAAGCCCATGTCGATGTAGAAGACCCCGGC
CATCACCCCCATCACCGTGTCCGACAGGCGATAGGTGGAGATCAGGCCGAGCAGCAGCAGGGCCTGCCAGCG
ATAACGCTGGACGAACTCGGTGATCGGCGTCAGCACCGGGGCCATCAGCAGGCGCCCGGGTGCCGACAGGCA
GGACGCGGCGATCAGCAGGAACAGCGTGCCGCGCGGCCAGGCACCGGAGTAGTAGGCGCGGCACATGGCGGT
GACGGTGACGAGGAGGATGATCAGCACCATCACCGAGACCGCCTGGTGGACGAAATCGAACAGCGGCACTTC
CTTGCCGCGCGCCGCCACCAGCAGCGGCCTGCGCACGGTGGCGAGCAGTTCGCGGACCGGGCGGATCTGCTG
GCGTCCCCACGGCGACAGGCAGATCCCCATGAGCAGCGCGTAGAGGCCGGCGCGCGGCCAGGCGCGGTCGAG
GAGGGCGGTGATCATCGCCGGCAGCGAGATCAGCAGGATCAGCAGCAGGAGCACCGAGAGCAGTTGGTGGTT
GAAGTCGAAACGCGACGGGTTGACGTGGATCGGCACGTCCACCGCCGGCTCGCGGATCAGCAGGCTGGTGAC
CAGCCCAGGCAGGATCAGCAGGGCGAACAACGCATAGGTCAGGCCCCAGGCCGATTGGCTGTAGTTGAGGCT
GGTGGAGCCGAACCATTCGGCGAGAATCAGCGCGCCGGCGCTGGCCAGCAGGATCGCCGCGCGGTAGCCGGT
CATGTAGCAGGCAGCGAGGGCGGCCTGGCGGCTATCCTCGGCGATTTCCAGGCGGTAGGCGTCGATCGCGAT
GTCCTGGGTGGCGGAGGCGAACGCCACCAGCAGGGCCAGGCCGATCAGCCAGGGCAGGTGGCTCTGCGGATT
GCACAGGGCCATGCCGAGCAGTCCCAGGGCGATCAGCACCTGCGAGAACACCAGCCAGGAACGGCGCCGGCC
GAGACGGCCGACGAAGGGCAGGCGCCACTGGTCGAGCATCGGCGACCAGACCCACTTGAAGGCGTACACCAG
CCCCAGCCAACTGGCGAAACCGATGGTATCCCGCGCCACGCCGGCTTCGCGCAGCCACACCGACAGGGTGTT
GAACACCAGCATGGTCGGCAGGCCGGCGGCGAAGCCGAGCAGCAGGAGGGCCAGGCTGGCGGGAGACTTGTA
GGCGACCAGAGCCTCTCGCCAGGATTGCTGAGTCATGGGGTAACCGTTCCGCAAAAAATAACGCGCACTCTA
ACCGCTCTACTTCGCTGTAAGCCAGCCATGCCGACGTATGTCCACCCTGTCGTTGTGCAGGAGAACGCCTTC
CTCGCGCAAGCGTGCGCGCTGTTCGCGACCGCCGGGACTGTCCGCCGGCAGGCTGATGCGACCGCCGGCGCC
GAGAACCCGATGCCAGGGCAGGCGGGTATCCACCGGCAACTGGCTGAGCGTCCTGCCGACCCAGCGGGCGGC
GCGGCCTAG

Translation:

MTRRRRLAGRRAAQPQPADQQQGGNAHHRGDVEEVLVAEALDHGSGVAADEARQQEHGRAEHGVLGGGELQV
GQARQVGDEGRGGEAAAEVVEGDGHHQHQHVRLERHHQADHVMAGQGLGVQRAELGEHGEQQVGGSRSGTAD
EQDGEDAEAGDQHPAGGGADQGHEYAEDLADTGDDFLGEAHVDVEDPGHHPHHRVRQAIGGDQAEQQQGLPA
ITLDELGDRRQHRGHQQAPGCRQAGRGDQQEQRAARPGTGVVGAAHGGDGDEEDDQHHHRDRLVDEIEQRHF
LAARRHQQRPAHGGEQFADRADLLASPRRQADPHEQRVEAGARPGAVEEGGDHRRQRDQQDQQQEHREQLVV
EVETRRVDVDRHVHRRLADQQAGDQPRQDQQGEQRIGQAPGRLAVVEAGGAEPFGENQRAGAGQQDRRAVAG
HVAGSEGGLAAILGDFQAVGVDRDVLGGGGERHQQGQADQPGQVALRIAQGHAEQSQGDQHLREHQPGTAPA
ETADEGQAPLVEHRRPDPLEGVHQPQPTGETDGIPRHAGFAQPHRQGVEHQHGRQAGGEAEQQEGQAGGRLV
GDQSLSPGLLSHGVTVPQKITRTLTALLRCKPAMPTYVHPVVVQENAFLAQACALFATAGTVRRQADATAGA
ENPMPGQAGIHRQLAERPADPAGGAA*

AnnotationID:6652 GeneID:6651

AnnotatorUID: diggins

Modification Date/Time: 2004-03-16 20:08:22

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16420

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20244

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6651_cdd.html

URL:

ReferenceID:30397

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

GC ORFID: `49653`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `4351401`	Stop: `4349377`
Length: `2025`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGACCCGGCGCCGGCGTCTCGCTGGACGGCGCGCGGCGCAGCCACAACCAGCCGATCAGCAGCAGGGTGGG AATGCCCATCACCGCGGTGACGTAGAAGAAGTGCTCGTAGCCGAGGCTCTCGACCATGGTTCCGGAGTAGCC GCCGATGAAGCGCGGCAGCAGGAGCATGGTCGAGCTGAGCATGGCGTACTGGGTGGCGGAGAACTTCAGGTT GGTCAGGCTCGACAGGTAGGCGACGAAGGCCGAGGCGGCGAGGCCGCCGCTGAAGTTGTCGAGGGTGATGGT CATCACCAGCATCAGCACGTGCGGCTCGAGCGCCATCACCAGGCTGATCACGTCATGGCTGGGCAGGGCCTC GGCGTGCAGCGGGCCGAGCTGGGCGAGCATGGCGAACAGCAGGTTGGTGGCAGCCGAAGCGGCACCGCCGAT GAACAGGATGGAGAGGATGCTGAAGCGGGCGATCAGCACCCCGCCGGCGGCGGCGCCGATCAGGGTCATGAG TACGCCGAAGACCTTGCTGACACTGGCGATGACTTCCTTGGAGAAGCCCATGTCGATGTAGAAGACCCCGGC CATCACCCCCATCACCGTGTCCGACAGGCGATAGGTGGAGATCAGGCCGAGCAGCAGCAGGGCCTGCCAGCG ATAACGCTGGACGAACTCGGTGATCGGCGTCAGCACCGGGGCCATCAGCAGGCGCCCGGGTGCCGACAGGCA GGACGCGGCGATCAGCAGGAACAGCGTGCCGCGCGGCCAGGCACCGGAGTAGTAGGCGCGGCACATGGCGGT GACGGTGACGAGGAGGATGATCAGCACCATCACCGAGACCGCCTGGTGGACGAAATCGAACAGCGGCACTTC CTTGCCGCGCGCCGCCACCAGCAGCGGCCTGCGCACGGTGGCGAGCAGTTCGCGGACCGGGCGGATCTGCTG GCGTCCCCACGGCGACAGGCAGATCCCCATGAGCAGCGCGTAGAGGCCGGCGCGCGGCCAGGCGCGGTCGAG GAGGGCGGTGATCATCGCCGGCAGCGAGATCAGCAGGATCAGCAGCAGGAGCACCGAGAGCAGTTGGTGGTT GAAGTCGAAACGCGACGGGTTGACGTGGATCGGCACGTCCACCGCCGGCTCGCGGATCAGCAGGCTGGTGAC CAGCCCAGGCAGGATCAGCAGGGCGAACAACGCATAGGTCAGGCCCCAGGCCGATTGGCTGTAGTTGAGGCT GGTGGAGCCGAACCATTCGGCGAGAATCAGCGCGCCGGCGCTGGCCAGCAGGATCGCCGCGCGGTAGCCGGT CATGTAGCAGGCAGCGAGGGCGGCCTGGCGGCTATCCTCGGCGATTTCCAGGCGGTAGGCGTCGATCGCGAT GTCCTGGGTGGCGGAGGCGAACGCCACCAGCAGGGCCAGGCCGATCAGCCAGGGCAGGTGGCTCTGCGGATT GCACAGGGCCATGCCGAGCAGTCCCAGGGCGATCAGCACCTGCGAGAACACCAGCCAGGAACGGCGCCGGCC GAGACGGCCGACGAAGGGCAGGCGCCACTGGTCGAGCATCGGCGACCAGACCCACTTGAAGGCGTACACCAG CCCCAGCCAACTGGCGAAACCGATGGTATCCCGCGCCACGCCGGCTTCGCGCAGCCACACCGACAGGGTGTT GAACACCAGCATGGTCGGCAGGCCGGCGGCGAAGCCGAGCAGCAGGAGGGCCAGGCTGGCGGGAGACTTGTA GGCGACCAGAGCCTCTCGCCAGGATTGCTGAGTCATGGGGTAACCGTTCCGCAAAAAATAACGCGCACTCTA ACCGCTCTACTTCGCTGTAAGCCAGCCATGCCGACGTATGTCCACCCTGTCGTTGTGCAGGAGAACGCCTTC CTCGCGCAAGCGTGCGCGCTGTTCGCGACCGCCGGGACTGTCCGCCGGCAGGCTGATGCGACCGCCGGCGCC GAGAACCCGATGCCAGGGCAGGCGGGTATCCACCGGCAACTGGCTGAGCGTCCTGCCGACCCAGCGGGCGGC GCGGCCTAG